Wall clock time and date at job start Tue Mar 31 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48505 * 109.47149 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47377 * 119.99764 * 3 2 1 7 7 C 1.37879 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47139 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00268 * 180.02562 * 11 10 9 13 13 O 1.21591 * 120.00175 * 354.94590 * 12 11 10 14 14 N 1.34782 * 120.00134 * 175.22503 * 12 11 10 15 15 C 1.49954 * 120.43127 * 5.51455 * 14 12 11 16 16 C 1.47331 * 106.42586 * 113.44277 * 15 14 12 17 17 N 1.45889 * 114.52249 * 58.31430 * 16 15 14 18 18 C 1.44217 * 106.60618 * 266.04296 * 17 16 15 19 19 C 1.54970 * 109.66670 * 100.11392 * 18 17 16 20 20 C 1.44198 * 120.43254 * 185.23955 * 14 12 11 21 21 C 1.54191 * 113.14371 * 136.37814 * 20 14 12 22 22 C 1.53719 * 87.14982 * 272.06265 * 21 20 14 23 23 C 1.53709 * 86.99982 * 334.13432 * 22 21 20 24 24 H 0.96997 * 119.99891 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46928 * 59.99954 * 9 7 2 26 26 H 1.08997 * 109.47046 * 300.00208 * 9 7 2 27 27 H 1.09007 * 109.47082 * 60.00034 * 10 9 7 28 28 H 1.08997 * 109.47315 * 300.00608 * 10 9 7 29 29 H 0.97005 * 119.99798 * 359.97438 * 11 10 9 30 30 H 1.08999 * 110.05971 * 232.66857 * 15 14 12 31 31 H 1.09002 * 110.06325 * 354.10997 * 15 14 12 32 32 H 1.08998 * 108.47837 * 179.62141 * 16 15 14 33 33 H 1.08997 * 108.47206 * 297.17722 * 16 15 14 34 34 H 1.00900 * 110.99920 * 145.04100 * 17 16 15 35 35 H 1.09004 * 109.43942 * 220.18056 * 18 17 16 36 36 H 1.09001 * 109.43958 * 340.05862 * 18 17 16 37 37 H 1.09008 * 109.48378 * 81.93353 * 19 18 17 38 38 H 1.09000 * 109.49397 * 201.97986 * 19 18 17 39 39 H 1.08993 * 113.60234 * 26.62794 * 21 20 14 40 40 H 1.09003 * 113.60364 * 157.49654 * 21 20 14 41 41 H 1.09000 * 113.62496 * 219.60407 * 22 21 20 42 42 H 1.08998 * 113.70621 * 88.67366 * 22 21 20 43 43 H 1.09006 * 113.60193 * 271.29964 * 23 22 21 44 44 H 1.08997 * 113.67902 * 140.44116 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 6 2.1867 -6.0979 0.0003 13 8 3.3991 -6.1000 -0.0916 14 7 1.5163 -7.2632 0.0969 15 6 0.0169 -7.2804 0.0803 16 6 -0.3782 -7.9611 -1.1651 17 7 0.1365 -9.3193 -1.3023 18 6 1.3652 -9.2208 -2.0509 19 6 2.5729 -9.2849 -1.0819 20 6 2.2315 -8.5100 0.2116 21 6 1.6331 -9.4566 1.2716 22 6 2.5342 -8.7518 2.2984 23 6 3.4696 -8.4152 1.1261 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.5428 -4.9308 0.0000 30 1 -0.3602 -7.8302 0.9426 31 1 -0.3689 -6.2610 0.0896 32 1 -1.4667 -7.9983 -1.2082 33 1 -0.0203 -7.3718 -2.0093 34 1 -0.5288 -9.9120 -1.7757 35 1 1.4250 -10.0462 -2.7604 36 1 1.3850 -8.2753 -2.5930 37 1 2.7889 -10.3253 -0.8385 38 1 3.4444 -8.8340 -1.5565 39 1 0.5685 -9.3002 1.4451 40 1 1.8878 -10.5047 1.1142 41 1 2.9760 -9.4289 3.0294 42 1 2.0748 -7.8757 2.7562 43 1 4.2171 -9.1838 0.9297 44 1 3.8965 -7.4138 1.1803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891769310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:27 Heat of formation + Delta-G solvation = 16.586494 kcal Electronic energy + Delta-G solvation = -23409.370702 eV Core-core repulsion = 20170.141398 eV Total energy + Delta-G solvation = -3239.229303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01706 -38.27002 -37.06218 -34.72752 -34.03033 -32.62510 -31.20394 -29.44219 -27.88529 -25.53840 -25.13881 -24.35064 -22.18899 -21.38597 -20.77497 -20.28264 -18.54754 -17.57887 -16.59433 -16.45365 -16.11389 -15.40568 -14.89648 -14.54419 -14.53044 -14.42989 -14.20561 -13.45188 -13.41885 -13.01811 -12.81610 -12.76404 -12.30446 -12.15594 -11.69369 -11.53206 -11.15916 -11.08549 -11.00019 -10.85700 -10.69129 -10.62702 -10.44123 -10.23101 -10.12900 -9.61956 -9.35473 -9.09595 -8.75990 -8.55246 -8.41093 -8.06746 -6.07992 -4.10455 2.91754 3.32384 3.35959 3.39709 3.61544 4.00971 4.18033 4.43963 4.69883 4.79298 4.80225 4.91701 5.06458 5.11124 5.14444 5.28976 5.29147 5.30333 5.43563 5.58091 5.71461 5.73821 5.84003 5.89674 5.93798 6.04897 6.13558 6.26975 6.30416 6.42891 6.49178 6.51535 6.74702 6.80317 6.99626 7.09583 7.18389 7.36765 7.57839 7.64914 7.91247 8.27780 8.44256 8.94606 9.09063 9.54193 11.03691 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027703 B = 0.003818 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.478016 B = 7332.464841 C = 7736.504505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.741 5.741 12 C 0.702 3.298 13 O -0.588 6.588 14 N -0.607 5.607 15 C 0.117 3.883 16 C 0.031 3.969 17 N -0.661 5.661 18 C 0.051 3.949 19 C -0.110 4.110 20 C 0.189 3.811 21 C -0.119 4.119 22 C -0.147 4.147 23 C -0.157 4.157 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.390 0.610 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.341 0.659 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.263 -21.334 -0.866 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.397 5.397 12 C 0.404 3.596 13 O -0.467 6.467 14 N -0.345 5.345 15 C -0.006 4.006 16 C -0.100 4.100 17 N -0.291 5.291 18 C -0.080 4.080 19 C -0.151 4.151 20 C 0.101 3.899 21 C -0.157 4.157 22 C -0.184 4.184 23 C -0.195 4.195 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.225 0.775 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.159 0.841 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.219 -21.198 -0.271 21.234 hybrid contribution -0.488 1.137 -0.989 1.584 sum -1.707 -20.060 -1.259 20.172 Atomic orbital electron populations 1.69944 1.06087 1.26930 1.50457 1.24985 0.94880 0.99356 0.95001 0.86577 0.79523 0.82669 0.78795 1.20122 1.21264 1.20097 1.21018 0.93230 0.90379 1.51285 0.92293 1.19307 0.94249 0.91132 0.97668 1.21561 0.95620 0.80544 1.00534 1.45733 1.09755 1.05385 1.78815 1.15996 0.85325 0.80251 0.78007 1.90797 1.12010 1.86106 1.57827 1.46902 1.05251 1.04081 1.78221 1.21261 0.80005 1.00770 0.98559 1.21365 0.99561 0.90360 0.98692 1.60198 1.06246 1.10188 1.52427 1.22136 0.91001 1.00333 0.94509 1.22624 0.96898 0.99555 0.95973 1.20506 0.92872 0.83504 0.93014 1.23187 0.99640 0.97929 0.94952 1.22854 0.98627 1.00253 0.96698 1.23629 0.96287 1.04731 0.94848 0.92835 0.96113 0.96049 0.92940 0.92847 0.77465 0.89999 0.89350 0.91271 0.93519 0.84137 0.92553 0.93609 0.91055 0.91758 0.91098 0.89971 0.92169 0.90810 0.90425 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.04 16 11 N -0.74 -13.54 5.47 -65.23 -0.36 -13.89 16 12 C 0.70 12.73 7.96 -86.92 -0.69 12.04 16 13 O -0.59 -12.63 13.66 5.29 0.07 -12.56 16 14 N -0.61 -8.49 2.42 -164.00 -0.40 -8.89 16 15 C 0.12 1.25 6.01 -4.84 -0.03 1.23 16 16 C 0.03 0.28 5.73 -7.10 -0.04 0.24 16 17 N -0.66 -5.68 5.60 -118.40 -0.66 -6.35 16 18 C 0.05 0.50 6.26 -4.22 -0.03 0.48 16 19 C -0.11 -1.27 5.53 -24.85 -0.14 -1.41 16 20 C 0.19 2.42 0.52 -130.94 -0.07 2.35 16 21 C -0.12 -1.29 6.27 -25.74 -0.16 -1.45 16 22 C -0.15 -1.78 7.95 -25.99 -0.21 -1.99 16 23 C -0.16 -2.20 6.66 -25.73 -0.17 -2.37 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.39 6.23 5.94 -40.82 -0.24 5.99 16 30 H 0.08 0.80 6.36 -51.93 -0.33 0.47 16 31 H 0.09 0.92 5.64 -51.93 -0.29 0.63 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.51 6.69 -51.93 -0.35 0.16 16 34 H 0.34 2.22 8.87 -39.29 -0.35 1.87 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.54 6.64 -51.93 -0.34 0.20 16 37 H 0.07 0.71 7.56 -51.92 -0.39 0.32 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.76 6.07 -51.93 -0.32 0.44 16 40 H 0.08 0.81 7.63 -51.93 -0.40 0.41 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 0.97 7.99 -51.93 -0.42 0.55 16 44 H 0.10 1.84 5.33 -51.93 -0.28 1.56 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -31.49 333.51 -9.76 -41.25 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.05 Total: 5.30 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.11 Total: -0.91 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.68 Total: -54.56 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.49 -9.76 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.841 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds