Wall clock time and date at job start Tue Mar 31 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00111 * 2 1 4 4 H 1.48505 * 109.47149 * 239.99772 * 3 2 1 5 5 H 1.48501 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47377 * 119.99764 * 3 2 1 7 7 C 1.37879 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47139 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00268 * 180.02562 * 11 10 9 13 13 O 1.21591 * 120.00175 * 354.94590 * 12 11 10 14 14 N 1.34782 * 120.00134 * 175.22503 * 12 11 10 15 15 C 1.49954 * 120.43127 * 5.51455 * 14 12 11 16 16 C 1.47331 * 106.42586 * 113.44277 * 15 14 12 17 17 N 1.45889 * 114.52249 * 58.31430 * 16 15 14 18 18 C 1.44217 * 106.60618 * 266.04296 * 17 16 15 19 19 C 1.54970 * 109.66670 * 100.11392 * 18 17 16 20 20 C 1.44198 * 120.43254 * 185.23955 * 14 12 11 21 21 C 1.54191 * 113.14371 * 136.37814 * 20 14 12 22 22 C 1.53719 * 87.14982 * 272.06265 * 21 20 14 23 23 C 1.53709 * 86.99982 * 334.13432 * 22 21 20 24 24 H 0.96997 * 119.99891 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46928 * 59.99954 * 9 7 2 26 26 H 1.08997 * 109.47046 * 300.00208 * 9 7 2 27 27 H 1.09007 * 109.47082 * 60.00034 * 10 9 7 28 28 H 1.08997 * 109.47315 * 300.00608 * 10 9 7 29 29 H 0.97005 * 119.99798 * 359.97438 * 11 10 9 30 30 H 1.08999 * 110.05971 * 232.66857 * 15 14 12 31 31 H 1.09002 * 110.06325 * 354.10997 * 15 14 12 32 32 H 1.08998 * 108.47837 * 179.62141 * 16 15 14 33 33 H 1.08997 * 108.47206 * 297.17722 * 16 15 14 34 34 H 1.00900 * 110.99920 * 145.04100 * 17 16 15 35 35 H 1.09004 * 109.43942 * 220.18056 * 18 17 16 36 36 H 1.09001 * 109.43958 * 340.05862 * 18 17 16 37 37 H 1.09008 * 109.48378 * 81.93353 * 19 18 17 38 38 H 1.09000 * 109.49397 * 201.97986 * 19 18 17 39 39 H 1.08993 * 113.60234 * 26.62794 * 21 20 14 40 40 H 1.09003 * 113.60364 * 157.49654 * 21 20 14 41 41 H 1.09000 * 113.62496 * 219.60407 * 22 21 20 42 42 H 1.08998 * 113.70621 * 88.67366 * 22 21 20 43 43 H 1.09006 * 113.60193 * 271.29964 * 23 22 21 44 44 H 1.08997 * 113.67902 * 140.44116 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 -0.0001 12 6 2.1867 -6.0979 0.0003 13 8 3.3991 -6.1000 -0.0916 14 7 1.5163 -7.2632 0.0969 15 6 0.0169 -7.2804 0.0803 16 6 -0.3782 -7.9611 -1.1651 17 7 0.1365 -9.3193 -1.3023 18 6 1.3652 -9.2208 -2.0509 19 6 2.5729 -9.2849 -1.0819 20 6 2.2315 -8.5100 0.2116 21 6 1.6331 -9.4566 1.2716 22 6 2.5342 -8.7518 2.2984 23 6 3.4696 -8.4152 1.1261 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.5428 -4.9308 0.0000 30 1 -0.3602 -7.8302 0.9426 31 1 -0.3689 -6.2610 0.0896 32 1 -1.4667 -7.9983 -1.2082 33 1 -0.0203 -7.3718 -2.0093 34 1 -0.5288 -9.9120 -1.7757 35 1 1.4250 -10.0462 -2.7604 36 1 1.3850 -8.2753 -2.5930 37 1 2.7889 -10.3253 -0.8385 38 1 3.4444 -8.8340 -1.5565 39 1 0.5685 -9.3002 1.4451 40 1 1.8878 -10.5047 1.1142 41 1 2.9760 -9.4289 3.0294 42 1 2.0748 -7.8757 2.7562 43 1 4.2171 -9.1838 0.9297 44 1 3.8965 -7.4138 1.1803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891769310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:27 Heat of formation + Delta-G solvation = -4.983385 kcal Electronic energy + Delta-G solvation = -23410.306042 eV Core-core repulsion = 20170.141398 eV Total energy + Delta-G solvation = -3240.164643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.14879 -39.59508 -37.93301 -36.47292 -35.30804 -34.48052 -32.14403 -31.30365 -28.87496 -26.83579 -26.50935 -25.57900 -23.39247 -22.94487 -21.86772 -21.48319 -19.90032 -18.67761 -18.41153 -17.62283 -17.21224 -16.71689 -16.48631 -16.09812 -15.73198 -15.56804 -15.25791 -14.97409 -14.82516 -14.31655 -14.05684 -13.85379 -13.68440 -13.23828 -13.18751 -12.91866 -12.56195 -12.50912 -12.42078 -12.25102 -12.08977 -11.78484 -11.64327 -11.58799 -11.48267 -11.37549 -11.16150 -10.60664 -10.48126 -10.03078 -9.51868 -9.30675 -8.24197 -6.34557 1.41441 1.43947 1.51669 1.68172 2.18418 2.40469 2.91552 3.10507 3.30350 3.64399 3.83445 3.95983 4.05022 4.12547 4.24000 4.27758 4.38191 4.46138 4.50022 4.50308 4.55730 4.79628 4.84297 4.84890 4.89873 4.93232 4.98608 5.04023 5.10547 5.21980 5.28835 5.30291 5.35411 5.52225 5.56278 5.58010 5.77692 5.84292 5.98158 6.14853 6.18816 6.60542 6.77757 7.03931 7.34658 7.65834 8.87572 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027703 B = 0.003818 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.478016 B = 7332.464841 C = 7736.504505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.027 3.973 10 C 0.163 3.837 11 N -0.737 5.737 12 C 0.697 3.303 13 O -0.627 6.627 14 N -0.599 5.599 15 C 0.111 3.889 16 C 0.033 3.967 17 N -0.655 5.655 18 C 0.056 3.944 19 C -0.110 4.110 20 C 0.175 3.825 21 C -0.096 4.096 22 C -0.143 4.143 23 C -0.168 4.168 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.009 0.991 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.402 0.598 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.027 0.973 34 H 0.359 0.641 35 H 0.079 0.921 36 H 0.021 0.979 37 H 0.094 0.906 38 H 0.037 0.963 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 -23.025 -0.785 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.011 4.011 10 C 0.038 3.962 11 N -0.394 5.394 12 C 0.399 3.601 13 O -0.509 6.509 14 N -0.335 5.335 15 C -0.010 4.010 16 C -0.097 4.097 17 N -0.285 5.285 18 C -0.074 4.074 19 C -0.150 4.150 20 C 0.088 3.912 21 C -0.134 4.134 22 C -0.181 4.181 23 C -0.206 4.206 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.239 0.761 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.045 0.955 34 H 0.178 0.822 35 H 0.097 0.903 36 H 0.039 0.961 37 H 0.112 0.888 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.350 -22.945 -0.192 23.066 hybrid contribution -0.153 1.600 -1.000 1.893 sum -2.503 -21.345 -1.192 21.524 Atomic orbital electron populations 1.70045 1.07490 1.28070 1.50882 1.25841 0.95790 1.02970 0.94314 0.85514 0.78342 0.78186 0.79098 1.19433 1.20413 1.19377 1.21419 0.93530 0.91928 1.51769 0.92469 1.19096 0.94144 0.91605 0.96222 1.21023 0.94616 0.81325 0.99222 1.45437 1.10184 1.04525 1.79295 1.16161 0.84939 0.81115 0.77910 1.90782 1.13872 1.86829 1.59444 1.46978 1.06792 1.03098 1.76591 1.21568 0.77567 1.01513 1.00345 1.21280 1.01287 0.90311 0.96829 1.60092 1.06131 1.09928 1.52364 1.22028 0.91025 1.00026 0.94357 1.22630 0.96726 1.00187 0.95443 1.20800 0.92635 0.83410 0.94331 1.23099 0.99651 0.98194 0.92472 1.22807 0.98386 1.00104 0.96774 1.23642 0.97302 1.02674 0.96957 0.92501 0.97443 0.97316 0.94157 0.94260 0.76073 0.88116 0.89378 0.88248 0.95452 0.82189 0.90268 0.96085 0.88777 0.94372 0.90223 0.87829 0.90446 0.92592 0.89171 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 2 C 0.01 0.55 5.46 84.66 0.46 1.02 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.39 5.09 29.85 0.15 1.54 16 10 C 0.16 7.41 5.62 86.38 0.49 7.89 16 11 N -0.74 -27.80 5.47 -478.54 -2.62 -30.42 16 12 C 0.70 26.11 7.96 179.05 1.42 27.53 16 13 O -0.63 -28.38 13.66 -4.00 -0.05 -28.43 16 14 N -0.60 -16.58 2.42 -791.04 -1.91 -18.49 16 15 C 0.11 2.20 6.01 83.94 0.50 2.71 16 16 C 0.03 0.54 5.73 84.73 0.49 1.02 16 17 N -0.65 -9.16 5.60 -528.50 -2.96 -12.12 16 18 C 0.06 1.01 6.26 87.48 0.55 1.56 16 19 C -0.11 -2.38 5.53 31.82 0.18 -2.21 16 20 C 0.18 4.32 0.52 5.39 0.00 4.32 16 21 C -0.10 -1.81 6.27 31.24 0.20 -1.61 16 22 C -0.14 -3.29 7.95 31.07 0.25 -3.04 16 23 C -0.17 -4.72 6.66 31.24 0.21 -4.51 16 24 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.40 13.06 5.94 -92.70 -0.55 12.51 16 30 H 0.10 1.67 6.36 -2.39 -0.02 1.65 16 31 H 0.09 1.74 5.64 -2.39 -0.01 1.73 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.03 0.57 6.69 -2.39 -0.02 0.55 16 34 H 0.36 3.22 8.87 -89.69 -0.80 2.43 16 35 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.02 0.49 6.64 -2.39 -0.02 0.47 16 37 H 0.09 1.60 7.56 -2.38 -0.02 1.58 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.39 6.07 -2.39 -0.01 1.38 16 40 H 0.10 1.57 7.63 -2.39 -0.02 1.56 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 2.22 7.99 -2.38 -0.02 2.21 16 44 H 0.06 2.27 5.33 -2.39 -0.01 2.25 16 Total: -1.00 -69.84 333.51 -0.45 -70.29 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.34 Total: 22.02 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.12 Total: 5.27 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -7.21 Total: -115.18 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -69.84 -0.45 -70.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891769310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.309 kcal (2) G-P(sol) polarization free energy of solvation -69.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds