Wall clock time and date at job start Tue Mar 31 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47055 * 2 1 4 4 C 1.34778 * 120.00090 * 84.30939 * 3 2 1 5 5 O 1.21587 * 120.00191 * 184.89344 * 4 3 2 6 6 N 1.34780 * 119.99966 * 4.89479 * 4 3 2 7 7 C 1.46499 * 120.00131 * 185.54155 * 6 4 3 8 8 C 1.52997 * 109.47194 * 184.37865 * 7 6 4 9 9 C 1.50695 * 115.55155 * 294.84697 * 8 7 6 10 10 H 1.08000 * 120.00465 * 99.14640 * 9 8 7 11 11 C 1.37877 * 119.99995 * 279.14901 * 9 8 7 12 12 N 1.31520 * 119.99806 * 7.03869 * 11 9 8 13 13 Si 1.86800 * 120.00133 * 187.04238 * 11 9 8 14 14 H 1.48502 * 109.47075 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.46987 * 299.99816 * 13 11 9 16 16 H 1.48500 * 109.47106 * 59.99964 * 13 11 9 17 17 C 1.53002 * 117.51654 * 80.54558 * 8 7 6 18 18 C 1.52994 * 59.99991 * 107.48175 * 17 8 7 19 19 C 1.46501 * 120.00130 * 264.31694 * 3 2 1 20 20 H 1.09001 * 110.28533 * 2.12031 * 19 3 2 21 21 C 1.54261 * 110.32210 * 240.00001 * 19 3 2 22 22 C 1.54385 * 105.05571 * 241.10138 * 21 19 3 23 23 N 1.48554 * 104.59534 * 23.85054 * 22 21 19 24 24 C 1.48559 * 104.22492 * 320.51765 * 23 22 21 25 25 H 1.09007 * 109.46632 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47544 * 299.99918 * 1 2 3 27 27 H 1.08996 * 109.47160 * 60.00332 * 1 2 3 28 28 H 1.08995 * 109.47544 * 240.00081 * 2 1 3 29 29 H 1.08996 * 109.47160 * 119.99668 * 2 1 3 30 30 H 0.97004 * 119.99637 * 5.53649 * 6 4 3 31 31 H 1.08999 * 109.46994 * 64.37438 * 7 6 4 32 32 H 1.09003 * 109.46967 * 304.38175 * 7 6 4 33 33 H 0.97001 * 119.99695 * 354.96474 * 12 11 9 34 34 H 1.09003 * 117.50162 * 214.96978 * 17 8 7 35 35 H 1.09000 * 117.49945 * 359.97438 * 17 8 7 36 36 H 1.09003 * 117.49991 * 252.50824 * 18 17 8 37 37 H 1.08999 * 117.52213 * 107.47907 * 18 17 8 38 38 H 1.08993 * 110.32273 * 359.97438 * 21 19 3 39 39 H 1.08997 * 110.32617 * 122.20709 * 21 19 3 40 40 H 1.09004 * 110.40776 * 142.63373 * 22 21 19 41 41 H 1.08996 * 110.40781 * 264.95388 * 22 21 19 42 42 H 1.00900 * 110.99803 * 200.95763 * 23 22 21 43 43 H 1.09003 * 110.41079 * 280.70339 * 24 23 22 44 44 H 1.08999 * 110.41156 * 158.26169 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1339 2.0552 1.1614 5 8 2.4536 3.2283 1.1545 6 7 1.8950 1.4288 2.3307 7 6 1.9013 2.1884 3.5833 8 6 1.7133 1.2307 4.7615 9 6 0.3831 0.5250 4.8197 10 1 0.2932 -0.4887 4.4580 11 6 -0.7194 1.1735 5.3346 12 7 -0.6459 2.4491 5.6463 13 14 -2.3173 0.2402 5.5896 14 1 -3.3418 1.1570 6.1511 15 1 -2.7913 -0.2947 4.2879 16 1 -2.0890 -0.8836 6.5331 17 6 2.9426 0.4624 5.2511 18 6 2.3719 1.6074 6.0902 19 6 2.3810 2.0300 -1.2625 20 1 2.1918 1.3589 -2.1002 21 6 3.8639 2.4543 -1.2402 22 6 3.8444 3.9894 -1.4026 23 7 2.5002 4.3997 -0.9213 24 6 1.5902 3.3444 -1.4364 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7188 0.4750 2.3427 31 1 1.0885 2.9146 3.5720 32 1 2.8528 2.7099 3.6872 33 1 0.2022 2.9157 5.5831 34 1 2.7891 -0.5535 5.6152 35 1 3.8854 0.6389 4.7334 36 1 2.9394 2.5374 6.1248 37 1 1.8427 1.3452 7.0063 38 1 4.3218 2.1802 -0.2899 39 1 4.4022 1.9928 -2.0681 40 1 4.6229 4.4462 -0.7914 41 1 3.9749 4.2626 -2.4497 42 1 2.2465 5.3056 -1.2860 43 1 1.3659 3.5166 -2.4891 44 1 0.6714 3.3156 -0.8508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891870392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:00 Heat of formation + Delta-G solvation = 16.587395 kcal Electronic energy + Delta-G solvation = -23698.931063 eV Core-core repulsion = 20459.701799 eV Total energy + Delta-G solvation = -3239.229264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07290 -37.73205 -36.64842 -35.13432 -32.92787 -31.88672 -30.64040 -29.18324 -28.01656 -25.75450 -24.72257 -23.02211 -21.61177 -21.31567 -21.03418 -19.53315 -18.73781 -17.46169 -16.66875 -16.17417 -15.96408 -14.93980 -14.72150 -14.15101 -13.84319 -13.75051 -13.60652 -13.23616 -12.98916 -12.74434 -12.56506 -12.28661 -12.13439 -11.98982 -11.82886 -11.41868 -11.38879 -11.20705 -10.94058 -10.85154 -10.80023 -10.74362 -10.44207 -10.12572 -9.61818 -9.12147 -8.61042 -8.44275 -8.35188 -8.32191 -7.98731 -7.82150 -6.34043 -4.09455 3.16156 3.41436 3.43089 3.61915 3.99309 4.40291 4.49641 4.57253 4.85142 4.89519 5.03734 5.19689 5.23970 5.26827 5.35080 5.42264 5.46829 5.50418 5.64414 5.79637 5.85452 5.92435 5.96460 6.02186 6.12282 6.22365 6.27314 6.32891 6.44490 6.55040 6.59065 6.72447 6.87899 6.93548 7.13297 7.24515 7.31506 7.47729 7.59475 7.63565 8.23669 8.38433 8.79529 8.87221 9.47511 9.66229 11.04972 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.005372 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.369979 B = 5211.107703 C = 5676.723294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.111 3.889 3 N -0.632 5.632 4 C 0.686 3.314 5 O -0.546 6.546 6 N -0.725 5.725 7 C 0.181 3.819 8 C 0.008 3.992 9 C -0.573 4.573 10 H 0.051 0.949 11 C 0.030 3.970 12 N -0.900 5.900 13 Si 1.065 2.935 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.289 1.289 17 C -0.194 4.194 18 C -0.175 4.175 19 C 0.167 3.833 20 H 0.087 0.913 21 C -0.130 4.130 22 C 0.047 3.953 23 N -0.620 5.620 24 C 0.034 3.966 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.392 0.608 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.276 0.724 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.321 0.679 43 H 0.033 0.967 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -3.467 -14.852 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.372 5.372 4 C 0.387 3.613 5 O -0.420 6.420 6 N -0.381 5.381 7 C 0.057 3.943 8 C 0.007 3.993 9 C -0.611 4.611 10 H 0.069 0.931 11 C -0.177 4.177 12 N -0.534 5.534 13 Si 0.893 3.107 14 H -0.208 1.208 15 H -0.216 1.216 16 H -0.215 1.215 17 C -0.231 4.231 18 C -0.213 4.213 19 C 0.061 3.939 20 H 0.105 0.895 21 C -0.169 4.169 22 C -0.083 4.083 23 N -0.248 5.248 24 C -0.096 4.096 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.227 0.773 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.045 0.955 42 H 0.136 0.864 43 H 0.051 0.949 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.424 -2.595 -13.624 14.557 hybrid contribution 1.420 -0.597 -1.407 2.087 sum 5.845 -3.191 -15.031 16.440 Atomic orbital electron populations 1.22241 0.95951 1.02020 1.03000 1.21412 0.94570 0.83094 1.02186 1.47302 1.70979 1.13695 1.05185 1.16127 0.79566 0.85357 0.80253 1.91088 1.52570 1.13047 1.85261 1.45232 1.75707 1.12074 1.05082 1.20768 0.98744 0.93189 0.81591 1.19352 0.92736 0.96749 0.90448 1.21152 0.92854 1.00842 1.46226 0.93113 1.25715 1.02387 0.96100 0.93497 1.70723 1.29206 1.08257 1.45211 0.83604 0.75560 0.75029 0.76466 1.20841 1.21550 1.21522 1.22831 0.97605 0.96382 1.06293 1.22755 1.04292 0.97172 0.97074 1.21450 0.93738 0.93519 0.85168 0.89492 1.22679 0.96306 0.95688 1.02229 1.22743 0.93736 0.95314 0.96526 1.63866 1.00516 1.03053 1.57321 1.23184 0.97647 0.92233 0.96582 0.91907 0.91284 0.92840 0.91009 0.91044 0.77252 0.92307 0.94679 0.91249 0.90256 0.91462 0.91353 0.89748 0.90435 0.91786 0.90705 0.95549 0.86397 0.94877 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.20 37.16 0.38 -1.85 16 2 C 0.11 1.38 5.93 -4.04 -0.02 1.36 16 3 N -0.63 -9.55 2.42 -170.22 -0.41 -9.96 16 4 C 0.69 13.44 7.25 -86.91 -0.63 12.81 16 5 O -0.55 -12.21 12.40 5.29 0.07 -12.14 16 6 N -0.73 -14.84 5.36 -65.23 -0.35 -15.19 16 7 C 0.18 4.25 5.37 -4.04 -0.02 4.22 16 8 C 0.01 0.19 0.90 -155.66 -0.14 0.05 16 9 C -0.57 -15.02 8.57 -34.44 -0.30 -15.31 16 10 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 11 C 0.03 0.81 5.41 -17.82 -0.10 0.71 16 12 N -0.90 -26.30 13.61 55.43 0.75 -25.54 16 13 Si 1.06 24.38 29.91 -169.99 -5.08 19.30 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 17 C -0.19 -4.11 9.96 -26.73 -0.27 -4.38 16 18 C -0.17 -3.98 9.04 -26.73 -0.24 -4.23 16 19 C 0.17 2.16 3.57 -66.55 -0.24 1.92 16 20 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 21 C -0.13 -1.66 6.09 -25.35 -0.15 -1.81 16 22 C 0.05 0.60 7.30 -2.18 -0.02 0.59 16 23 N -0.62 -9.39 5.24 -109.66 -0.58 -9.96 16 24 C 0.03 0.47 6.38 -2.19 -0.01 0.46 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 29 H 0.07 0.92 6.41 -51.93 -0.33 0.59 16 30 H 0.39 7.60 6.09 -40.82 -0.25 7.35 16 31 H 0.06 1.57 7.54 -51.93 -0.39 1.18 16 32 H 0.03 0.82 8.06 -51.93 -0.42 0.41 16 33 H 0.28 8.08 6.05 -40.82 -0.25 7.84 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 38 H 0.08 1.20 7.30 -51.93 -0.38 0.82 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.32 4.23 8.92 -39.29 -0.35 3.88 16 43 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 1.34 7.95 -51.93 -0.41 0.93 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -30.93 347.58 -9.57 -40.50 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.45 Total: 13.21 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.76 Total: -5.45 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.58 Total: -60.65 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.93 -9.57 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.091 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds