Wall clock time and date at job start Tue Mar 31 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46856 * 2 1 4 4 C 1.34771 * 119.99931 * 93.91299 * 3 2 1 5 5 O 1.21593 * 120.00131 * 183.21981 * 4 3 2 6 6 N 1.34781 * 120.00081 * 3.21323 * 4 3 2 7 7 C 1.46500 * 119.99882 * 184.97592 * 6 4 3 8 8 C 1.53003 * 109.46911 * 185.02406 * 7 6 4 9 9 C 1.50704 * 115.55142 * 55.27468 * 8 7 6 10 10 H 1.07993 * 119.99982 * 278.16477 * 9 8 7 11 11 C 1.37878 * 119.99526 * 97.88507 * 9 8 7 12 12 N 1.31518 * 119.99489 * 174.41764 * 11 9 8 13 13 Si 1.86793 * 120.00275 * 354.41930 * 11 9 8 14 14 H 1.48498 * 109.47249 * 94.71230 * 13 11 9 15 15 H 1.48502 * 109.47278 * 214.70930 * 13 11 9 16 16 H 1.48497 * 109.47468 * 334.70998 * 13 11 9 17 17 C 1.53001 * 117.51694 * 200.97596 * 8 7 6 18 18 C 1.52998 * 117.49829 * 269.60696 * 8 7 6 19 19 C 1.46502 * 119.99995 * 273.91468 * 3 2 1 20 20 H 1.09002 * 110.26928 * 352.84462 * 19 3 2 21 21 C 1.54594 * 110.31001 * 115.04284 * 19 3 2 22 22 C 1.54936 * 102.92013 * 96.95793 * 21 19 3 23 23 N 1.48537 * 103.22650 * 37.41353 * 22 21 19 24 24 C 1.47896 * 105.82207 * 320.78955 * 23 22 21 25 25 H 1.09000 * 109.47525 * 65.00225 * 1 2 3 26 26 H 1.09007 * 109.46999 * 184.99673 * 1 2 3 27 27 H 1.08998 * 109.47377 * 304.99590 * 1 2 3 28 28 H 1.08998 * 109.47090 * 240.00238 * 2 1 3 29 29 H 1.08993 * 109.46939 * 119.99851 * 2 1 3 30 30 H 0.97000 * 119.99663 * 4.98731 * 6 4 3 31 31 H 1.08994 * 109.47206 * 65.02340 * 7 6 4 32 32 H 1.08999 * 109.47559 * 305.02405 * 7 6 4 33 33 H 0.97002 * 119.99681 * 180.02562 * 12 11 9 34 34 H 1.08995 * 117.49878 * 214.96668 * 17 8 7 35 35 H 1.09000 * 117.49828 * 359.97438 * 17 8 7 36 36 H 1.09006 * 117.49921 * 359.97438 * 18 8 7 37 37 H 1.08994 * 117.50284 * 145.00136 * 18 8 7 38 38 H 1.08999 * 110.72366 * 215.31478 * 21 19 3 39 39 H 1.09000 * 110.72233 * 338.59715 * 21 19 3 40 40 H 1.08997 * 110.66473 * 278.97763 * 22 21 19 41 41 H 1.08998 * 110.80828 * 155.91751 * 22 21 19 42 42 H 1.00900 * 110.99441 * 200.27777 * 23 22 21 43 43 H 1.09004 * 109.92049 * 265.98373 * 24 23 22 44 44 H 1.09000 * 110.08222 * 144.77074 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3180 1.9900 1.1644 5 8 2.6672 3.1547 1.1693 6 7 2.2305 1.3079 2.3236 7 6 2.4499 1.9972 3.5975 8 6 2.4175 0.9800 4.7399 9 6 3.3766 -0.1751 4.6092 10 1 3.1173 -1.0255 3.9961 11 6 4.5876 -0.1435 5.2677 12 7 5.3767 -1.1954 5.2436 13 14 5.1072 1.3930 6.1941 14 1 4.7284 1.2609 7.6238 15 1 6.5785 1.5626 6.0856 16 1 4.4280 2.5770 5.6094 17 6 2.1345 1.5072 6.1481 18 6 1.0663 0.7046 5.4026 19 6 2.1808 2.1008 -1.2658 20 1 2.0170 1.4270 -2.1068 21 6 1.2016 3.2952 -1.3336 22 6 2.0793 4.4888 -0.8802 23 7 3.4016 4.1878 -1.4863 24 6 3.5853 2.7268 -1.3482 25 1 -0.3634 0.4343 -0.9314 26 1 -0.3633 -1.0238 0.0895 27 1 -0.3634 0.5894 0.8418 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.0224 0.3605 2.3142 31 1 1.6657 2.7389 3.7491 32 1 3.4204 2.4931 3.5799 33 1 6.2285 -1.1733 5.7072 34 1 2.6419 1.0186 6.9798 35 1 1.9717 2.5791 6.2609 36 1 0.2004 1.2485 5.0249 37 1 0.8709 -0.3119 5.7440 38 1 0.8448 3.4440 -2.3527 39 1 0.3663 3.1485 -0.6488 40 1 2.1527 4.5212 0.2068 41 1 1.6841 5.4285 -1.2660 42 1 4.1382 4.6911 -1.0149 43 1 4.1437 2.5071 -0.4382 44 1 4.1171 2.3330 -2.2143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891870393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:03 Heat of formation + Delta-G solvation = 19.207042 kcal Electronic energy + Delta-G solvation = -23688.776516 eV Core-core repulsion = 20449.660848 eV Total energy + Delta-G solvation = -3239.115668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43961 -37.82248 -36.74987 -35.50249 -33.22407 -32.14616 -30.72327 -29.30656 -28.06165 -26.32579 -25.13778 -23.20862 -21.83716 -21.52501 -21.15595 -19.52390 -18.83214 -17.45289 -16.69599 -16.24514 -15.69930 -15.55067 -15.11123 -14.93032 -14.10019 -13.95509 -13.61504 -13.35838 -13.15734 -12.94607 -12.70543 -12.44699 -12.16085 -12.07376 -11.85066 -11.78403 -11.52650 -11.29115 -11.20269 -10.92001 -10.81581 -10.70420 -10.45111 -10.16915 -9.74015 -9.57312 -9.16378 -8.73162 -8.65511 -8.58202 -8.11559 -8.01808 -6.20207 -4.23824 2.94830 3.24779 3.36806 3.42782 3.59118 4.25212 4.36399 4.59967 4.80301 4.86795 4.93492 4.96718 5.12415 5.18326 5.26940 5.35481 5.58553 5.63453 5.66849 5.75069 5.82363 5.90705 5.94029 6.00592 6.02547 6.12983 6.14906 6.19090 6.22994 6.38799 6.40911 6.48523 6.66156 6.78629 6.94936 7.00773 7.06370 7.26233 7.33740 7.54178 7.64874 8.35684 8.47500 8.78546 9.12040 9.43360 10.91078 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.005426 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.820521 B = 5158.743415 C = 5503.138836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.629 5.629 4 C 0.703 3.297 5 O -0.595 6.595 6 N -0.717 5.717 7 C 0.177 3.823 8 C -0.014 4.014 9 C -0.490 4.490 10 H 0.077 0.923 11 C 0.079 3.921 12 N -0.894 5.894 13 Si 0.884 3.116 14 H -0.281 1.281 15 H -0.296 1.296 16 H -0.258 1.258 17 C -0.194 4.194 18 C -0.181 4.181 19 C 0.158 3.842 20 H 0.091 0.909 21 C -0.127 4.127 22 C 0.022 3.978 23 N -0.667 5.667 24 C 0.036 3.964 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.400 0.600 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.265 0.735 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.334 0.666 43 H 0.055 0.945 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 4.349 -11.035 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.367 5.367 4 C 0.405 3.595 5 O -0.476 6.476 6 N -0.372 5.372 7 C 0.052 3.948 8 C -0.016 4.016 9 C -0.527 4.527 10 H 0.095 0.905 11 C -0.124 4.124 12 N -0.531 5.531 13 Si 0.713 3.287 14 H -0.207 1.207 15 H -0.223 1.223 16 H -0.182 1.182 17 C -0.232 4.232 18 C -0.218 4.218 19 C 0.053 3.947 20 H 0.109 0.891 21 C -0.167 4.167 22 C -0.106 4.106 23 N -0.295 5.295 24 C -0.095 4.095 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.237 0.763 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.149 0.851 43 H 0.074 0.926 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.670 5.100 -11.645 15.388 hybrid contribution 0.501 0.041 1.567 1.646 sum -8.169 5.141 -10.078 13.954 Atomic orbital electron populations 1.22210 0.96040 1.02176 1.02326 1.21518 0.94349 0.82685 1.03277 1.47317 1.70340 1.14100 1.04912 1.15965 0.78472 0.84734 0.80329 1.90634 1.55471 1.15500 1.86017 1.45206 1.74346 1.13145 1.04462 1.20876 0.99533 0.93060 0.81294 1.19633 0.96015 0.96828 0.89094 1.20113 0.99939 1.01617 1.31007 0.90504 1.24994 0.96096 0.95807 0.95499 1.69893 1.11376 1.28773 1.43013 0.86804 0.77090 0.84761 0.80094 1.20699 1.22317 1.18200 1.22881 1.04957 0.98077 0.97274 1.22924 0.92467 1.00193 1.06253 1.21633 0.94997 0.93497 0.84542 0.89062 1.22798 0.97783 0.95171 1.00911 1.23506 0.88889 0.96454 1.01783 1.63203 1.04820 1.04995 1.56479 1.22883 0.96223 0.89551 1.00793 0.92600 0.91596 0.92260 0.90557 0.90054 0.76320 0.94330 0.92093 0.92485 0.89171 0.90594 0.90974 0.89406 0.91217 0.91243 0.88457 0.92331 0.85129 0.92635 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 37.16 0.38 -1.30 16 2 C 0.11 1.21 6.08 -4.04 -0.02 1.18 16 3 N -0.63 -8.84 2.43 -170.25 -0.41 -9.25 16 4 C 0.70 12.48 7.34 -86.92 -0.64 11.84 16 5 O -0.60 -11.80 10.64 5.28 0.06 -11.74 16 6 N -0.72 -13.27 5.24 -65.22 -0.34 -13.61 16 7 C 0.18 3.64 5.53 -4.04 -0.02 3.62 16 8 C -0.01 -0.31 1.03 -155.66 -0.16 -0.47 16 9 C -0.49 -12.64 8.89 -34.44 -0.31 -12.95 16 10 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 11 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 12 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 13 Si 0.88 21.45 24.75 -169.99 -4.21 17.24 16 14 H -0.28 -6.65 7.00 56.52 0.40 -6.25 16 15 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.04 6.09 56.52 0.34 -5.69 16 17 C -0.19 -3.98 7.23 -26.73 -0.19 -4.17 16 18 C -0.18 -3.44 9.92 -26.73 -0.27 -3.71 16 19 C 0.16 2.03 3.58 -66.57 -0.24 1.79 16 20 H 0.09 0.96 7.86 -51.93 -0.41 0.55 16 21 C -0.13 -1.63 6.40 -24.87 -0.16 -1.79 16 22 C 0.02 0.32 6.88 -1.90 -0.01 0.31 16 23 N -0.67 -9.52 7.50 -110.08 -0.83 -10.34 16 24 C 0.04 0.51 6.57 -2.75 -0.02 0.50 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.73 7.97 -51.93 -0.41 0.31 16 29 H 0.08 1.02 5.99 -51.93 -0.31 0.71 16 30 H 0.40 7.08 5.74 -40.82 -0.23 6.84 16 31 H 0.04 0.76 8.09 -51.93 -0.42 0.33 16 32 H 0.06 1.40 7.60 -51.93 -0.39 1.01 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.09 1.96 6.26 -51.93 -0.33 1.63 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 40 H 0.10 1.70 4.86 -52.72 -0.26 1.44 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.33 4.76 8.92 -39.29 -0.35 4.41 16 43 H 0.06 0.95 6.52 -51.93 -0.34 0.61 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -29.20 337.38 -8.93 -38.12 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.30 Total: 12.96 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -1.76 Total: -3.08 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.81 Total: -58.59 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.06 Total: -11.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.21 Total: 17.24 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.20 -8.93 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891870393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.330 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds