Wall clock time and date at job start Tue Mar 31 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48496 * 109.47168 * 270.00010 * 3 2 1 5 5 H 1.48497 * 109.47048 * 30.00289 * 3 2 1 6 6 H 1.48503 * 109.46666 * 149.99984 * 3 2 1 7 7 C 1.37882 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00065 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99870 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.53750 * 61.15419 * 9 7 2 11 11 C 1.54266 * 110.48614 * 298.54317 * 9 7 2 12 12 C 1.53872 * 106.59640 * 217.71111 * 11 9 7 13 13 C 1.54266 * 106.60044 * 359.97438 * 12 11 9 14 14 H 1.08998 * 110.48431 * 264.79545 * 13 12 11 15 15 N 1.46500 * 110.48679 * 142.28536 * 13 12 11 16 16 C 1.34776 * 119.99768 * 86.45248 * 15 13 12 17 17 O 1.21583 * 120.00208 * 0.02562 * 16 15 13 18 18 N 1.34775 * 119.99819 * 180.02562 * 16 15 13 19 19 C 1.46509 * 119.99757 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.46815 * 180.02562 * 19 18 16 21 21 H 1.08996 * 112.84859 * 316.19070 * 20 19 18 22 22 C 1.53781 * 113.61561 * 87.50111 * 20 19 18 23 23 C 1.53790 * 87.07668 * 139.97892 * 22 20 19 24 24 H 1.09001 * 113.68432 * 220.00719 * 23 22 20 25 25 N 1.46895 * 113.61305 * 89.11709 * 23 22 20 26 26 C 1.53781 * 87.08091 * 334.56491 * 23 22 20 27 27 C 1.54887 * 110.48381 * 183.76610 * 9 7 2 28 28 H 0.96998 * 119.99588 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.03179 * 336.99883 * 11 9 7 30 30 H 1.09003 * 110.02980 * 98.37811 * 11 9 7 31 31 H 1.09002 * 110.03208 * 119.28196 * 12 11 9 32 32 H 1.09000 * 110.03462 * 240.66592 * 12 11 9 33 33 H 0.97000 * 119.99974 * 266.45685 * 15 13 12 34 34 H 0.96995 * 120.00635 * 0.02562 * 18 16 15 35 35 H 1.09001 * 109.46940 * 299.99575 * 19 18 16 36 36 H 1.08989 * 109.47302 * 60.00024 * 19 18 16 37 37 H 1.08996 * 113.61329 * 254.52810 * 22 20 19 38 38 H 1.08997 * 113.61192 * 25.43131 * 22 20 19 39 39 H 1.00904 * 111.00127 * 82.49722 * 25 23 22 40 40 H 1.00892 * 110.99823 * 206.44974 * 25 23 22 41 41 H 1.08997 * 113.61788 * 270.88133 * 26 23 22 42 42 H 1.09002 * 113.68349 * 139.99379 * 26 23 22 43 43 H 1.09001 * 110.75744 * 274.93157 * 27 9 7 44 44 H 1.09000 * 110.75698 * 38.30975 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8936 -0.7023 0.8946 11 6 4.0519 -0.5029 -1.2687 12 6 5.2987 -1.2933 -1.7028 13 6 5.4728 -2.4370 -0.6823 14 1 6.1735 -2.1465 0.1004 15 7 5.9311 -3.6566 -1.3522 16 6 7.2481 -3.8613 -1.5520 17 8 8.0559 -3.0341 -1.1760 18 7 7.6697 -4.9831 -2.1688 19 6 9.1015 -5.2058 -2.3855 20 6 9.3070 -6.5428 -3.1006 21 1 8.6899 -7.3418 -2.6897 22 6 9.2421 -6.4380 -4.6334 23 6 10.4128 -7.4345 -4.6725 24 1 11.1596 -7.2031 -5.4320 25 7 9.9881 -8.8405 -4.6998 26 6 10.7856 -6.9307 -3.2682 27 6 4.0535 -2.6419 -0.0960 28 1 -0.4849 0.8401 0.0004 29 1 3.2999 -0.5291 -2.0573 30 1 4.3223 0.5292 -1.0452 31 1 5.1517 -1.7033 -2.7020 32 1 6.1748 -0.6450 -1.6906 33 1 5.2866 -4.3167 -1.6519 34 1 7.0254 -5.6429 -2.4692 35 1 9.5057 -4.4004 -2.9987 36 1 9.6158 -5.2244 -1.4248 37 1 8.3192 -6.8316 -5.0593 38 1 9.4974 -5.4493 -5.0146 39 1 9.7533 -9.1292 -5.6377 40 1 10.6964 -9.4399 -4.3036 41 1 11.4629 -6.0767 -3.2762 42 1 11.1092 -7.7212 -2.5910 43 1 4.1062 -3.1010 0.8912 44 1 3.4397 -3.2403 -0.7693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891931177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:46 Heat of formation + Delta-G solvation = -23.123890 kcal Electronic energy + Delta-G solvation = -21819.481271 eV Core-core repulsion = 18578.529996 eV Total energy + Delta-G solvation = -3240.951275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14630 -39.34781 -37.39989 -34.62130 -33.69651 -32.28168 -31.81921 -28.53264 -28.03565 -26.68371 -26.06357 -23.50156 -22.40944 -20.99919 -19.97079 -19.53491 -19.12951 -18.00247 -16.89456 -16.36462 -16.05309 -15.75338 -15.35450 -15.21501 -14.77441 -14.70880 -14.10551 -13.78472 -13.60031 -12.86524 -12.72942 -12.70483 -12.49250 -12.24943 -11.80598 -11.60404 -11.28024 -11.06917 -10.96090 -10.88958 -10.59315 -10.41752 -10.10209 -10.04700 -9.83525 -9.71317 -9.43811 -9.14724 -9.07591 -8.95026 -8.54694 -8.47410 -6.04987 -4.03782 2.87688 3.33270 3.41976 3.42988 3.44981 3.89752 4.13087 4.27396 4.39466 4.45725 4.52354 4.62286 5.07845 5.12932 5.23512 5.34695 5.39041 5.41096 5.50783 5.54319 5.58353 5.66583 5.71429 5.89009 6.04692 6.15882 6.21779 6.33662 6.51767 6.52938 6.56093 6.65934 6.70023 6.77821 6.91160 6.92986 6.98204 7.15053 7.21510 7.56385 7.80734 8.22330 8.54539 8.82182 8.98221 9.58328 11.08162 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044474 B = 0.002706 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.432822 B =10343.531791 C =10545.489015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.014 3.986 10 H 0.033 0.967 11 C -0.132 4.132 12 C -0.128 4.128 13 C 0.154 3.846 14 H 0.085 0.915 15 N -0.735 5.735 16 C 0.700 3.300 17 O -0.596 6.596 18 N -0.749 5.749 19 C 0.148 3.852 20 C -0.110 4.110 21 H 0.101 0.899 22 C -0.128 4.128 23 C 0.059 3.941 24 H 0.046 0.954 25 N -0.833 5.833 26 C -0.127 4.127 27 C -0.108 4.108 28 H 0.263 0.737 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.394 0.606 34 H 0.395 0.605 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.344 0.656 40 H 0.343 0.657 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.285 -16.000 -9.561 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.547 4.547 8 H 0.092 0.908 9 C -0.005 4.005 10 H 0.051 0.949 11 C -0.170 4.170 12 C -0.167 4.167 13 C 0.049 3.951 14 H 0.104 0.896 15 N -0.388 5.388 16 C 0.400 3.600 17 O -0.475 6.475 18 N -0.406 5.406 19 C 0.023 3.977 20 C -0.128 4.128 21 H 0.119 0.881 22 C -0.166 4.166 23 C -0.053 4.053 24 H 0.064 0.936 25 N -0.364 5.364 26 C -0.165 4.165 27 C -0.147 4.147 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.228 0.772 34 H 0.228 0.772 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.295 -14.851 -8.723 26.618 hybrid contribution 0.585 0.200 -1.059 1.226 sum 20.880 -14.651 -9.782 27.319 Atomic orbital electron populations 1.69905 1.06299 1.26893 1.51065 1.24996 0.94642 0.99052 0.94443 0.86915 0.80072 0.83644 0.78467 1.20381 1.22208 1.18846 1.21000 0.88573 0.94387 1.50726 0.90839 1.19902 0.96603 0.90755 0.93229 0.94851 1.22638 0.95668 0.97781 1.00905 1.22508 0.98544 0.97200 0.98489 1.21932 0.96536 0.82603 0.94032 0.89649 1.45372 1.05104 1.24413 1.63952 1.16045 0.83155 0.81954 0.78832 1.90899 1.53610 1.45827 1.57123 1.45114 1.08360 1.22429 1.64669 1.21193 0.80606 0.95895 0.99990 1.22662 0.97603 0.96937 0.95625 0.88068 1.23077 0.98815 0.98620 0.96100 1.22377 0.96764 0.89072 0.97091 0.93587 1.58506 1.48201 1.02259 1.27473 1.22996 0.96280 1.01097 0.96141 1.22689 0.92244 1.00094 0.99625 0.92734 0.91331 0.93868 0.92419 0.92671 0.77233 0.77179 0.91857 0.91857 0.90877 0.89712 0.84323 0.84325 0.89358 0.90914 0.92265 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.95 24.67 -169.99 -4.19 17.76 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.34 6.36 56.52 0.36 -5.98 16 7 C -0.51 -14.03 8.98 -34.44 -0.31 -14.34 16 8 H 0.07 2.17 8.02 -52.49 -0.42 1.75 16 9 C 0.01 0.33 2.29 -90.11 -0.21 0.13 16 10 H 0.03 0.80 7.32 -51.93 -0.38 0.42 16 11 C -0.13 -2.84 4.65 -25.61 -0.12 -2.96 16 12 C -0.13 -2.39 6.53 -25.61 -0.17 -2.56 16 13 C 0.15 2.70 3.16 -66.26 -0.21 2.49 16 14 H 0.09 1.62 7.66 -51.93 -0.40 1.22 16 15 N -0.73 -10.75 5.12 -57.04 -0.29 -11.04 16 16 C 0.70 10.80 8.56 -86.92 -0.74 10.06 16 17 O -0.60 -11.71 16.05 5.29 0.08 -11.62 16 18 N -0.75 -8.33 5.56 -65.22 -0.36 -8.69 16 19 C 0.15 1.47 5.51 -4.03 -0.02 1.45 16 20 C -0.11 -0.80 3.67 -89.81 -0.33 -1.13 16 21 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 22 C -0.13 -0.88 7.43 -25.91 -0.19 -1.08 16 23 C 0.06 0.35 5.04 -66.90 -0.34 0.01 16 24 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 25 N -0.83 -4.42 9.47 -3.97 -0.04 -4.45 16 26 C -0.13 -0.79 7.43 -25.92 -0.19 -0.98 16 27 C -0.11 -2.06 5.88 -24.72 -0.15 -2.20 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 1.55 7.82 -51.93 -0.41 1.14 16 30 H 0.04 0.94 5.72 -51.93 -0.30 0.64 16 31 H 0.06 1.01 8.04 -51.93 -0.42 0.60 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.39 4.70 8.54 -40.82 -0.35 4.35 16 34 H 0.39 3.38 8.49 -40.82 -0.35 3.03 16 35 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 36 H 0.06 0.70 8.14 -51.94 -0.42 0.27 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 39 H 0.34 1.43 9.08 -39.29 -0.36 1.08 16 40 H 0.34 1.40 9.07 -39.30 -0.36 1.04 16 41 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -32.99 346.83 -9.39 -42.38 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.51 Total: 6.42 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -3.07 Total: -9.20 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.08 Total: -50.97 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.19 Total: 17.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.99 -9.39 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891931177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds