Wall clock time and date at job start Tue Mar 31 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.99870 * 2 1 4 4 C 1.54323 * 109.88476 * 121.09570 * 2 1 3 5 5 C 1.55157 * 102.93924 * 97.22657 * 4 2 1 6 6 H 1.09000 * 111.00315 * 277.39121 * 5 4 2 7 7 N 1.46901 * 111.00508 * 153.57552 * 5 4 2 8 8 C 1.54688 * 101.67843 * 35.33560 * 5 4 2 9 9 N 1.47018 * 109.88131 * 238.90635 * 2 1 3 10 10 C 1.34784 * 125.64722 * 59.48551 * 9 2 1 11 11 O 1.21579 * 120.00114 * 359.97438 * 10 9 2 12 12 N 1.34777 * 119.99908 * 179.97438 * 10 9 2 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 H 1.09007 * 110.01529 * 325.06878 * 13 12 10 15 15 C 1.53881 * 110.03072 * 86.45366 * 13 12 10 16 16 C 1.54261 * 106.59411 * 119.28663 * 15 13 12 17 17 C 1.54888 * 104.19880 * 23.61432 * 16 15 13 18 18 H 1.09002 * 110.75887 * 80.55416 * 17 16 15 19 19 C 1.50703 * 110.75509 * 203.74248 * 17 16 15 20 20 H 1.07996 * 119.99954 * 118.54493 * 19 17 16 21 21 C 1.37872 * 120.00128 * 298.54080 * 19 17 16 22 22 N 1.31518 * 120.00060 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 120.00260 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46885 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47177 * 120.00443 * 23 21 19 26 26 H 1.48504 * 109.47040 * 240.00088 * 23 21 19 27 27 C 1.54265 * 110.03399 * 203.62353 * 13 12 10 28 28 H 1.08997 * 109.46908 * 179.64529 * 1 2 3 29 29 H 1.08999 * 109.46888 * 299.64032 * 1 2 3 30 30 H 1.09000 * 109.47351 * 59.63768 * 1 2 3 31 31 H 1.09002 * 110.72199 * 215.58691 * 4 2 1 32 32 H 1.08996 * 110.71934 * 338.86376 * 4 2 1 33 33 H 1.00894 * 111.00172 * 179.97438 * 7 5 4 34 34 H 1.00892 * 110.99863 * 303.95689 * 7 5 4 35 35 H 1.09006 * 110.39012 * 204.36803 * 8 5 4 36 36 H 1.08996 * 110.23808 * 82.11424 * 8 5 4 37 37 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 38 38 H 1.08997 * 110.03102 * 238.57276 * 15 13 12 39 39 H 1.09000 * 110.02689 * 0.02562 * 15 13 12 40 40 H 1.09005 * 110.48814 * 142.29223 * 16 15 13 41 41 H 1.09002 * 110.49139 * 264.93272 * 16 15 13 42 42 H 0.96997 * 120.00588 * 180.02562 * 22 21 19 43 43 H 1.08990 * 110.48767 * 335.78183 * 27 13 12 44 44 H 1.09004 * 110.48412 * 98.43283 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 1.2427 5 6 2.3520 -2.1694 0.6923 6 1 1.4454 -2.7738 0.6609 7 7 3.3967 -2.8330 1.4836 8 6 2.8523 -1.8529 -0.7368 9 7 2.0300 -0.7140 -1.1839 10 6 1.7741 -0.3851 -2.4657 11 8 1.0744 0.5764 -2.7186 12 7 2.2940 -1.1222 -3.4672 13 6 2.0155 -0.7652 -4.8604 14 1 1.0035 -0.3699 -4.9491 15 6 3.0340 0.2789 -5.3507 16 6 3.7838 -0.3605 -6.5375 17 6 2.8070 -1.4396 -7.0671 18 1 2.0439 -0.9912 -7.7032 19 6 3.5536 -2.5171 -7.8106 20 1 3.5230 -3.5372 -7.4574 21 6 4.2756 -2.2005 -8.9417 22 7 4.3132 -0.9581 -9.3715 23 14 5.2004 -3.5361 -9.8638 24 1 4.9986 -4.8393 -9.1811 25 1 4.6888 -3.6222 -11.2552 26 1 6.6487 -3.2086 -9.8883 27 6 2.1820 -2.0026 -5.7665 28 1 -0.3633 -1.0276 -0.0064 29 1 -0.3633 0.5082 0.8932 30 1 -0.3634 0.5194 -0.8867 31 1 2.9658 -0.2832 1.6182 32 1 1.2919 -0.7891 2.0200 33 1 3.5895 -3.7565 1.1259 34 1 4.2363 -2.2744 1.5148 35 1 2.6997 -2.7111 -1.3914 36 1 3.9059 -1.5745 -0.7144 37 1 2.8520 -1.8896 -3.2654 38 1 2.5163 1.1804 -5.6781 39 1 3.7357 0.5195 -4.5520 40 1 3.9840 0.3840 -7.3081 41 1 4.7127 -0.8198 -6.1992 42 1 4.8208 -0.7354 -10.1675 43 1 2.8521 -2.7269 -5.3036 44 1 1.2129 -2.4563 -5.9744 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891931787.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:51 Heat of formation + Delta-G solvation = -40.782024 kcal Electronic energy + Delta-G solvation = -22739.220393 eV Core-core repulsion = 19497.503404 eV Total energy + Delta-G solvation = -3241.716989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47087 -38.44540 -36.86250 -34.01586 -33.74897 -32.32462 -31.11158 -28.66510 -28.13407 -26.87180 -25.98550 -23.93678 -22.64911 -21.07073 -19.92518 -19.46960 -18.94184 -17.82221 -17.06069 -16.48826 -15.81664 -15.52738 -14.83743 -14.57127 -14.41497 -14.11749 -13.94861 -13.70352 -13.45898 -13.06305 -12.67087 -12.39467 -12.36027 -12.27692 -11.77141 -11.63641 -11.23852 -11.10862 -11.00810 -10.94556 -10.82044 -10.55588 -10.31378 -9.96793 -9.82096 -9.51135 -9.24908 -9.19956 -8.83413 -8.77427 -8.40865 -8.34075 -6.01529 -4.05243 2.67649 3.27966 3.36383 3.39210 3.40511 3.91081 4.17546 4.34894 4.41350 4.42933 4.69530 4.87238 4.98958 5.17967 5.28372 5.30635 5.45490 5.52668 5.56104 5.59114 5.70188 5.73416 5.86237 5.94119 6.13935 6.30462 6.36190 6.41065 6.62668 6.64270 6.68505 6.76418 6.91275 6.96950 6.98650 7.15203 7.28832 7.38837 7.72237 7.88501 8.02419 8.17838 8.41988 8.83235 8.97033 9.58973 11.07529 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027236 B = 0.003595 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.818734 B = 7785.679768 C = 8453.525901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.073 0.927 4 C -0.120 4.120 5 C 0.082 3.918 6 H 0.097 0.903 7 N -0.835 5.835 8 C 0.065 3.935 9 N -0.635 5.635 10 C 0.719 3.281 11 O -0.588 6.588 12 N -0.732 5.732 13 C 0.156 3.844 14 H 0.079 0.921 15 C -0.135 4.135 16 C -0.099 4.099 17 C 0.051 3.949 18 H 0.033 0.967 19 C -0.514 4.514 20 H 0.055 0.945 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.285 1.285 27 C -0.120 4.120 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.346 0.654 34 H 0.343 0.657 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.391 0.609 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 -1.834 20.663 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.091 0.909 4 C -0.159 4.159 5 C -0.031 4.031 6 H 0.115 0.885 7 N -0.364 5.364 8 C -0.061 4.061 9 N -0.375 5.375 10 C 0.421 3.579 11 O -0.466 6.466 12 N -0.385 5.385 13 C 0.052 3.948 14 H 0.097 0.903 15 C -0.174 4.174 16 C -0.138 4.138 17 C 0.032 3.968 18 H 0.051 0.949 19 C -0.552 4.552 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.158 4.158 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.225 0.775 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.425 -0.918 20.835 21.135 hybrid contribution 1.524 -1.064 -1.405 2.330 sum -1.901 -1.982 19.430 19.623 Atomic orbital electron populations 1.22174 0.94759 1.02180 1.03037 1.21350 0.94699 0.95983 0.83059 0.90897 1.22757 1.02201 0.94241 0.96652 1.22592 0.95909 0.95566 0.89052 0.88451 1.58849 1.13435 1.07276 1.56792 1.23146 0.95410 0.89831 0.97703 1.47573 1.54329 1.31525 1.04038 1.15553 0.80392 0.82781 0.79144 1.90886 1.43394 1.29884 1.82392 1.45582 1.54626 1.32482 1.05851 1.21754 0.99100 0.96664 0.77284 0.90287 1.22665 0.97758 0.97812 0.99120 1.22300 0.97949 0.99129 0.94398 1.19559 0.93753 0.93516 0.89938 0.94910 1.21128 1.30060 0.94178 1.09879 0.92644 1.24979 0.96538 0.95267 0.97136 1.69972 1.41554 1.17220 1.23846 0.86589 0.79638 0.82224 0.79829 1.19862 1.21060 1.21111 1.22751 1.00081 0.95184 0.97797 0.92748 0.91980 0.90670 0.90447 0.89391 0.84107 0.84346 0.90973 0.91856 0.77529 0.92586 0.93376 0.91252 0.93641 0.93115 0.92270 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.06 37.16 0.34 -1.42 16 2 C 0.15 1.64 3.50 -66.95 -0.23 1.40 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.12 -0.91 6.17 -24.90 -0.15 -1.06 16 5 C 0.08 0.60 4.19 -65.68 -0.28 0.32 16 6 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 7 N -0.83 -5.04 9.41 -2.95 -0.03 -5.06 16 8 C 0.07 0.59 6.24 -2.65 -0.02 0.57 16 9 N -0.63 -7.93 3.08 -168.83 -0.52 -8.45 16 10 C 0.72 11.93 8.26 -86.91 -0.72 11.21 16 11 O -0.59 -11.88 14.91 5.30 0.08 -11.80 16 12 N -0.73 -11.74 4.95 -57.58 -0.29 -12.03 16 13 C 0.16 2.93 3.23 -66.81 -0.22 2.72 16 14 H 0.08 1.58 7.61 -51.92 -0.39 1.18 16 15 C -0.13 -2.72 6.59 -25.61 -0.17 -2.88 16 16 C -0.10 -2.32 5.57 -25.08 -0.14 -2.46 16 17 C 0.05 1.25 2.82 -89.78 -0.25 0.99 16 18 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.51 -13.79 8.54 -34.44 -0.29 -14.08 16 20 H 0.06 1.46 7.78 -52.49 -0.41 1.05 16 21 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 22 N -0.89 -25.26 12.02 55.43 0.67 -24.59 16 23 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.12 -2.39 5.94 -25.07 -0.15 -2.54 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.05 6.74 -51.93 -0.35 0.70 16 31 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.09 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.35 1.69 9.08 -39.29 -0.36 1.33 16 34 H 0.34 1.79 8.89 -39.30 -0.35 1.44 16 35 H 0.07 0.62 7.31 -51.93 -0.38 0.24 16 36 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.39 5.42 6.83 -40.82 -0.28 5.14 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 40 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 41 H 0.04 1.08 8.04 -51.93 -0.42 0.67 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -30.88 345.14 -9.75 -40.63 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.46 Total: 5.77 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.38 Total: -5.60 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.17 Total: -50.13 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.88 -9.75 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891931787.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.154 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds