Wall clock time and date at job start Tue Mar 31 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99827 * 2 1 4 4 C 1.54321 * 109.87746 * 238.90511 * 2 1 3 5 5 C 1.55159 * 102.94196 * 262.77457 * 4 2 1 6 6 H 1.08992 * 111.00591 * 82.57263 * 5 4 2 7 7 N 1.46902 * 111.00459 * 206.39332 * 5 4 2 8 8 C 1.55131 * 101.48607 * 324.33415 * 5 4 2 9 9 N 1.47017 * 109.88247 * 121.09889 * 2 1 3 10 10 C 1.34786 * 125.64591 * 300.43452 * 9 2 1 11 11 O 1.21588 * 120.00027 * 0.02562 * 10 9 2 12 12 N 1.34778 * 119.99731 * 180.02562 * 10 9 2 13 13 C 1.46498 * 119.99694 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.01691 * 326.38743 * 13 12 10 15 15 C 1.53872 * 110.03563 * 87.83270 * 13 12 10 16 16 C 1.54266 * 106.60044 * 119.28303 * 15 13 12 17 17 C 1.54893 * 104.19500 * 23.61099 * 16 15 13 18 18 H 1.09000 * 110.75571 * 80.37081 * 17 16 15 19 19 C 1.50697 * 110.75379 * 203.74545 * 17 16 15 20 20 H 1.07999 * 120.00325 * 113.32969 * 19 17 16 21 21 C 1.37880 * 119.99873 * 293.32564 * 19 17 16 22 22 N 1.31518 * 119.99845 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00048 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47325 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47278 * 119.99959 * 23 21 19 26 26 H 1.48497 * 109.47387 * 239.99920 * 23 21 19 27 27 C 1.54266 * 110.03082 * 204.99781 * 13 12 10 28 28 H 1.09001 * 109.47009 * 300.35914 * 1 2 3 29 29 H 1.09000 * 109.47252 * 60.35815 * 1 2 3 30 30 H 1.08999 * 109.47440 * 180.36071 * 1 2 3 31 31 H 1.08995 * 110.72359 * 21.13851 * 4 2 1 32 32 H 1.09002 * 110.71907 * 144.23763 * 4 2 1 33 33 H 1.00902 * 111.00233 * 180.02562 * 7 5 4 34 34 H 1.00908 * 110.99755 * 303.94908 * 7 5 4 35 35 H 1.08998 * 110.50094 * 278.45277 * 8 5 4 36 36 H 1.08997 * 110.34566 * 156.05541 * 8 5 4 37 37 H 0.96994 * 120.00105 * 359.97438 * 12 10 9 38 38 H 1.09002 * 110.03208 * 238.56530 * 15 13 12 39 39 H 1.08996 * 110.03362 * 359.97438 * 15 13 12 40 40 H 1.09002 * 110.48438 * 142.28717 * 16 15 13 41 41 H 1.08998 * 110.48431 * 264.79545 * 16 15 13 42 42 H 0.97002 * 119.99577 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.48620 * 335.78364 * 27 13 12 44 44 H 1.09004 * 110.48798 * 98.42198 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 2.3518 -2.1695 -0.6924 6 1 1.4452 -2.7736 -0.6604 7 7 3.3959 -2.8334 -1.4844 8 6 2.8613 -1.8466 0.7368 9 7 2.0300 -0.7141 1.1838 10 6 1.7754 -0.3844 2.4657 11 8 1.0769 0.5780 2.7187 12 7 2.2952 -1.1217 3.4671 13 6 2.0180 -0.7638 4.8603 14 1 1.9338 0.3186 4.9578 15 6 0.7173 -1.4390 5.3293 16 6 1.0970 -2.3528 6.5128 17 6 2.4072 -1.7367 7.0633 18 1 2.1926 -0.8798 7.7018 19 6 3.2122 -2.7709 7.8072 20 1 4.1651 -3.0968 7.4170 21 6 2.7322 -3.3010 8.9860 22 7 1.5717 -2.9045 9.4610 23 14 3.7304 -4.5824 9.9086 24 1 4.9899 -4.8544 9.1704 25 1 4.0529 -4.0752 11.2666 26 1 2.9424 -5.8358 10.0227 27 6 3.1427 -1.2909 5.7752 28 1 -0.3633 0.5194 0.8868 29 1 -0.3634 0.5083 -0.8932 30 1 -0.3634 -1.0276 0.0065 31 1 1.2917 -0.7890 -2.0200 32 1 2.9639 -0.2813 -1.6201 33 1 3.5887 -3.7570 -1.1267 34 1 3.1414 -2.8697 -2.4602 35 1 3.9123 -1.5589 0.7114 36 1 2.7178 -2.7048 1.3932 37 1 2.8521 -1.8898 3.2653 38 1 0.0013 -0.6844 5.6551 39 1 0.2920 -2.0326 4.5202 40 1 0.3174 -2.3344 7.2743 41 1 1.2680 -3.3725 6.1677 42 1 1.2342 -3.2772 10.2905 43 1 3.6465 -2.1386 5.3107 44 1 3.8562 -0.4976 5.9984 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891931788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:54 Heat of formation + Delta-G solvation = -39.902386 kcal Electronic energy + Delta-G solvation = -22726.915712 eV Core-core repulsion = 19485.236867 eV Total energy + Delta-G solvation = -3241.678845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.39952 -38.36797 -36.81764 -33.98648 -33.71522 -32.29771 -31.09750 -28.77393 -28.10536 -26.85494 -25.98804 -23.90436 -22.56038 -20.90313 -19.90558 -19.44632 -18.96526 -17.81738 -16.69029 -16.47365 -15.79767 -15.59362 -14.91504 -14.65529 -14.60488 -14.20312 -13.85161 -13.57704 -13.42936 -12.96009 -12.63852 -12.56629 -12.30606 -12.12718 -11.73588 -11.35217 -11.23778 -11.12218 -11.01634 -10.92315 -10.88859 -10.52816 -10.25475 -9.94466 -9.72521 -9.53250 -9.19918 -9.18689 -8.81187 -8.76308 -8.37870 -8.31388 -6.00030 -4.02979 2.71155 3.29716 3.38077 3.41179 3.44363 3.90217 4.15633 4.33085 4.43406 4.46170 4.73456 4.96765 5.13563 5.23589 5.32205 5.35485 5.49581 5.53479 5.57238 5.62251 5.71980 5.73943 5.88248 5.94399 6.16165 6.32701 6.38823 6.43531 6.63813 6.69314 6.71812 6.78460 6.93767 6.96466 7.00364 7.19925 7.30294 7.39879 7.71566 7.88620 8.03615 8.22073 8.44717 8.86962 8.99855 9.61033 11.09654 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027018 B = 0.003599 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.081742 B = 7777.067913 C = 8434.856345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 H 0.074 0.926 4 C -0.123 4.123 5 C 0.076 3.924 6 H 0.054 0.946 7 N -0.840 5.840 8 C 0.108 3.892 9 N -0.637 5.637 10 C 0.721 3.279 11 O -0.589 6.589 12 N -0.731 5.731 13 C 0.156 3.844 14 H 0.080 0.920 15 C -0.134 4.134 16 C -0.102 4.102 17 C 0.052 3.948 18 H 0.036 0.964 19 C -0.513 4.513 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.121 4.121 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.346 0.654 34 H 0.346 0.654 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.392 0.608 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 0.676 -22.051 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 H 0.092 0.908 4 C -0.162 4.162 5 C -0.036 4.036 6 H 0.072 0.928 7 N -0.370 5.370 8 C -0.016 4.016 9 N -0.377 5.377 10 C 0.423 3.577 11 O -0.467 6.467 12 N -0.385 5.385 13 C 0.052 3.948 14 H 0.098 0.902 15 C -0.173 4.173 16 C -0.140 4.140 17 C 0.033 3.967 18 H 0.054 0.946 19 C -0.551 4.551 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.159 4.159 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.226 0.774 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.585 2.001 -21.348 21.450 hybrid contribution -0.031 -1.948 0.208 1.960 sum 0.555 0.053 -21.140 21.147 Atomic orbital electron populations 1.22186 0.94885 1.02105 1.03041 1.21281 0.94480 0.96007 0.83058 0.90822 1.22794 1.02023 0.94627 0.96710 1.22475 0.92798 0.95070 0.93269 0.92809 1.58584 1.45625 1.26124 1.06712 1.22228 0.95679 0.89405 0.94307 1.47590 1.54174 1.31914 1.04023 1.15520 0.80382 0.82745 0.79088 1.90884 1.43296 1.30141 1.82391 1.45576 1.54756 1.32377 1.05812 1.21748 0.96188 0.99574 0.77331 0.90175 1.22648 0.96310 0.99257 0.99075 1.22332 1.00482 0.96771 0.94451 1.19558 0.91288 0.95793 0.90075 0.94600 1.21134 1.04828 1.22544 1.06597 0.92613 1.24987 0.94993 0.96727 0.97240 1.69976 1.18522 1.43143 1.21019 0.86593 0.80302 0.81568 0.79843 1.19831 1.21080 1.21130 1.22761 0.96196 0.99260 0.97660 0.90555 0.92087 0.92876 0.90193 0.89591 0.84156 0.84117 0.90469 0.91185 0.77413 0.92586 0.93357 0.91650 0.93603 0.93128 0.92259 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.06 37.16 0.34 -1.47 16 2 C 0.16 1.71 3.49 -66.95 -0.23 1.48 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -0.95 6.15 -24.90 -0.15 -1.10 16 5 C 0.08 0.59 4.20 -65.44 -0.28 0.31 16 6 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 7 N -0.84 -5.15 9.38 -2.75 -0.03 -5.18 16 8 C 0.11 1.07 6.28 -2.41 -0.02 1.06 16 9 N -0.64 -8.25 3.08 -168.55 -0.52 -8.77 16 10 C 0.72 12.13 8.27 -86.91 -0.72 11.42 16 11 O -0.59 -12.00 14.89 5.29 0.08 -11.92 16 12 N -0.73 -11.90 4.94 -57.58 -0.28 -12.19 16 13 C 0.16 2.95 3.25 -66.81 -0.22 2.73 16 14 H 0.08 1.61 7.56 -51.93 -0.39 1.22 16 15 C -0.13 -2.69 6.59 -25.61 -0.17 -2.86 16 16 C -0.10 -2.36 5.75 -25.07 -0.14 -2.51 16 17 C 0.05 1.27 2.73 -89.78 -0.24 1.02 16 18 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.51 -13.81 8.49 -34.44 -0.29 -14.10 16 20 H 0.06 1.48 7.77 -52.49 -0.41 1.07 16 21 C 0.06 1.71 5.36 -17.82 -0.10 1.62 16 22 N -0.89 -25.45 12.41 55.43 0.69 -24.76 16 23 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.12 -2.43 5.94 -25.07 -0.15 -2.58 16 28 H 0.08 1.09 6.74 -51.93 -0.35 0.74 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.49 7.83 -51.93 -0.41 0.09 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.35 1.77 9.08 -39.29 -0.36 1.41 16 34 H 0.35 1.57 9.03 -39.29 -0.35 1.22 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.67 7.29 -51.93 -0.38 0.29 16 37 H 0.39 5.54 6.83 -40.82 -0.28 5.27 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.93 7.92 -51.93 -0.41 0.52 16 40 H 0.06 1.66 7.63 -51.93 -0.40 1.26 16 41 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -31.06 346.08 -9.73 -40.78 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.49 Total: 5.77 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.37 Total: -4.99 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.14 Total: -50.90 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.06 -9.73 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891931788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.882 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds