Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.33054 * 2 1 4 4 C 1.55392 * 110.43822 * 237.72889 * 2 1 3 5 5 C 1.55157 * 101.36576 * 204.12226 * 4 2 1 6 6 H 1.09002 * 110.72219 * 277.04408 * 5 4 2 7 7 N 1.46901 * 110.71950 * 153.94862 * 5 4 2 8 8 C 1.54321 * 103.10033 * 35.49711 * 5 4 2 9 9 N 1.47019 * 107.27531 * 337.71659 * 8 5 4 10 10 C 1.34777 * 125.65068 * 178.90607 * 9 8 5 11 11 O 1.21582 * 120.00041 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99820 * 0.02562 * 10 9 8 13 13 C 1.46502 * 119.99951 * 179.97438 * 12 10 9 14 14 H 1.09001 * 110.01493 * 325.07066 * 13 12 10 15 15 C 1.53880 * 110.02874 * 86.45862 * 13 12 10 16 16 C 1.54260 * 106.59699 * 119.28875 * 15 13 12 17 17 C 1.54892 * 104.19934 * 23.60515 * 16 15 13 18 18 H 1.08999 * 110.74851 * 80.37588 * 17 16 15 19 19 C 1.50699 * 110.75475 * 203.55955 * 17 16 15 20 20 H 1.08001 * 119.99673 * 118.55366 * 19 17 16 21 21 C 1.37869 * 120.00188 * 298.54539 * 19 17 16 22 22 N 1.31519 * 120.00316 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 120.00255 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.46994 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47332 * 119.99832 * 23 21 19 26 26 H 1.48498 * 109.47232 * 240.00408 * 23 21 19 27 27 C 1.54262 * 110.03303 * 203.62559 * 13 12 10 28 28 H 1.08994 * 109.47452 * 299.22595 * 1 2 3 29 29 H 1.09005 * 109.46673 * 59.22276 * 1 2 3 30 30 H 1.09002 * 109.47413 * 179.21619 * 1 2 3 31 31 H 1.09004 * 111.18705 * 86.08489 * 4 2 1 32 32 H 1.09001 * 111.02055 * 322.08992 * 4 2 1 33 33 H 1.00901 * 111.00125 * 182.44116 * 7 5 4 34 34 H 1.00905 * 110.99962 * 306.40009 * 7 5 4 35 35 H 1.09001 * 109.88480 * 97.13771 * 8 5 4 36 36 H 1.09004 * 109.87910 * 218.29695 * 8 5 4 37 37 H 0.96993 * 120.00268 * 0.02562 * 12 10 9 38 38 H 1.09007 * 110.03019 * 238.56784 * 15 13 12 39 39 H 1.08997 * 110.03216 * 359.94880 * 15 13 12 40 40 H 1.09004 * 110.48538 * 142.29082 * 16 15 13 41 41 H 1.09001 * 110.48119 * 264.92739 * 16 15 13 42 42 H 0.96993 * 120.00402 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.48711 * 335.78434 * 27 13 12 44 44 H 1.08998 * 110.48573 * 98.43008 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0726 -0.7774 -1.2312 5 6 3.4803 -1.1972 -0.7316 6 1 4.1960 -0.3867 -0.8693 7 7 3.9353 -2.4123 -1.4205 8 6 3.2507 -1.4739 0.7691 9 7 2.0430 -0.7372 1.1692 10 6 1.4951 -0.7364 2.4006 11 8 0.4903 -0.0875 2.6184 12 7 2.0611 -1.4549 3.3904 13 6 1.4659 -1.4537 4.7290 14 1 1.0405 -0.4741 4.9472 15 6 0.3748 -2.5347 4.8217 16 6 0.8176 -3.5140 5.9283 17 6 1.7702 -2.6769 6.8176 18 1 1.2040 -2.0467 7.5035 19 6 2.7171 -3.5713 7.5754 20 1 3.7822 -3.4876 7.4171 21 6 2.2239 -4.4963 8.4708 22 7 0.9269 -4.5985 8.6634 23 14 3.3977 -5.6046 9.4107 24 1 4.7952 -5.2927 9.0169 25 1 3.2325 -5.3774 10.8689 26 1 3.0988 -7.0243 9.0939 27 6 2.5337 -1.8138 5.7825 28 1 -0.3634 0.5017 0.8968 29 1 -0.3633 0.5259 -0.8830 30 1 -0.3634 -1.0276 -0.0141 31 1 2.1452 -0.1301 -2.1052 32 1 1.4569 -1.6513 -1.4442 33 1 4.8331 -2.7117 -1.0706 34 1 3.2518 -3.1503 -1.3413 35 1 3.1042 -2.5418 0.9310 36 1 4.1068 -1.1236 1.3458 37 1 2.8629 -1.9723 3.2167 38 1 -0.5800 -2.0799 5.0858 39 1 0.2875 -3.0597 3.8704 40 1 -0.0433 -3.8528 6.5048 41 1 1.3469 -4.3634 5.4965 42 1 0.5799 -5.2496 9.2931 43 1 3.3402 -2.3887 5.3272 44 1 2.9252 -0.9117 6.2526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891931789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = -38.993324 kcal Electronic energy + Delta-G solvation = -22791.124477 eV Core-core repulsion = 19549.485052 eV Total energy + Delta-G solvation = -3241.639425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45805 -38.39167 -36.86848 -34.01211 -33.76865 -32.32148 -31.05864 -28.77231 -28.13520 -26.88045 -25.83960 -23.91842 -22.43615 -21.19708 -19.98195 -19.50872 -18.95295 -17.65762 -17.02804 -16.47350 -15.91533 -15.35292 -15.03306 -14.69349 -14.53177 -14.09903 -13.89358 -13.67661 -13.51275 -12.82229 -12.63622 -12.34716 -12.24872 -12.17077 -11.77979 -11.70284 -11.30703 -11.10066 -11.00970 -10.96470 -10.91258 -10.55186 -10.26817 -9.95332 -9.65706 -9.51495 -9.23661 -9.16713 -8.83150 -8.77253 -8.41248 -8.34529 -6.01761 -4.05452 2.69057 3.27857 3.36273 3.39081 3.40115 3.95943 4.13523 4.34406 4.40493 4.43714 4.73188 4.86748 5.00570 5.21182 5.30427 5.32949 5.45447 5.53996 5.58238 5.61055 5.69869 5.75938 5.85869 6.04696 6.13099 6.32354 6.36410 6.52310 6.62503 6.65195 6.68944 6.76183 6.91163 6.98019 6.99506 7.16137 7.28635 7.38574 7.71961 7.88265 8.02159 8.18437 8.41828 8.84054 8.96851 9.58798 11.07322 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026246 B = 0.003667 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.573397 B = 7634.551559 C = 8296.042563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.072 0.928 4 C -0.122 4.122 5 C 0.082 3.918 6 H 0.098 0.902 7 N -0.836 5.836 8 C 0.066 3.934 9 N -0.636 5.636 10 C 0.719 3.281 11 O -0.586 6.586 12 N -0.731 5.731 13 C 0.156 3.844 14 H 0.079 0.921 15 C -0.134 4.134 16 C -0.100 4.100 17 C 0.051 3.949 18 H 0.032 0.968 19 C -0.514 4.514 20 H 0.055 0.945 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.285 1.285 27 C -0.120 4.120 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.345 0.655 34 H 0.344 0.656 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.391 0.609 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.259 0.741 43 H 0.058 0.942 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 5.840 -19.159 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 H 0.090 0.910 4 C -0.161 4.161 5 C -0.031 4.031 6 H 0.116 0.884 7 N -0.365 5.365 8 C -0.060 4.060 9 N -0.377 5.377 10 C 0.422 3.578 11 O -0.464 6.464 12 N -0.385 5.385 13 C 0.052 3.948 14 H 0.097 0.903 15 C -0.173 4.173 16 C -0.138 4.138 17 C 0.033 3.967 18 H 0.051 0.949 19 C -0.552 4.552 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.158 4.158 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.224 0.776 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.400 6.667 -19.452 20.842 hybrid contribution 1.025 -1.515 1.432 2.323 sum 4.425 5.152 -18.020 19.258 Atomic orbital electron populations 1.22174 0.93732 1.02682 1.03612 1.21788 0.95408 0.94902 0.82973 0.91045 1.23023 0.94933 1.00904 0.97191 1.22511 0.97399 0.94105 0.89058 0.88409 1.58907 1.08123 1.07898 1.61539 1.22959 0.88461 0.96718 0.97906 1.47600 1.29072 1.52148 1.08846 1.15570 0.82738 0.80424 0.79100 1.90835 1.26146 1.48141 1.81326 1.45593 1.31387 1.51200 1.10328 1.21748 0.94534 0.99515 0.79002 0.90269 1.22661 0.97640 0.97394 0.99616 1.22299 1.00517 0.96505 0.94464 1.19555 0.93093 0.92681 0.91419 0.94941 1.21123 0.92840 1.18472 1.22803 0.92647 1.24974 0.94993 0.97254 0.96680 1.69970 1.11420 1.35521 1.35689 0.86589 0.81291 0.80571 0.79831 1.19860 1.21055 1.21108 1.22750 0.96987 0.99757 0.96351 0.88998 0.92409 0.92832 0.89422 0.90336 0.84184 0.84256 0.91970 0.91646 0.77572 0.92599 0.93409 0.91236 0.93665 0.93112 0.92287 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.72 37.16 0.32 -1.60 16 2 C 0.15 1.62 3.77 -66.15 -0.25 1.37 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -0.96 6.19 -24.32 -0.15 -1.11 16 5 C 0.08 0.60 4.09 -65.88 -0.27 0.33 16 6 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 7 N -0.84 -5.36 9.32 -3.11 -0.03 -5.39 16 8 C 0.07 0.60 5.89 -3.07 -0.02 0.58 16 9 N -0.64 -7.93 3.24 -168.43 -0.55 -8.48 16 10 C 0.72 11.82 8.26 -86.92 -0.72 11.11 16 11 O -0.59 -11.57 13.67 5.29 0.07 -11.49 16 12 N -0.73 -11.70 4.95 -57.58 -0.29 -11.99 16 13 C 0.16 2.92 3.23 -66.81 -0.22 2.71 16 14 H 0.08 1.57 7.61 -51.93 -0.39 1.18 16 15 C -0.13 -2.69 6.59 -25.61 -0.17 -2.86 16 16 C -0.10 -2.31 5.57 -25.07 -0.14 -2.45 16 17 C 0.05 1.25 2.81 -89.78 -0.25 1.00 16 18 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.51 -13.79 8.55 -34.44 -0.29 -14.08 16 20 H 0.06 1.46 7.79 -52.49 -0.41 1.05 16 21 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 22 N -0.89 -25.25 12.01 55.43 0.67 -24.58 16 23 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.12 -2.40 5.95 -25.07 -0.15 -2.55 16 28 H 0.09 1.37 5.88 -51.93 -0.31 1.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.65 7.97 -51.93 -0.41 0.23 16 33 H 0.35 1.78 9.08 -39.29 -0.36 1.42 16 34 H 0.34 2.11 8.87 -39.29 -0.35 1.76 16 35 H 0.06 0.56 7.99 -51.93 -0.41 0.15 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.39 5.45 7.33 -40.82 -0.30 5.15 16 38 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 39 H 0.05 0.93 7.92 -51.93 -0.41 0.52 16 40 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 41 H 0.04 1.08 8.04 -51.93 -0.42 0.66 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -30.48 344.05 -9.84 -40.32 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.49 Total: 6.43 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.40 Total: -5.94 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.19 Total: -50.44 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.48 -9.84 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891931789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.327 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds