Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48504 * 109.46743 * 239.99836 * 3 2 1 5 5 H 1.48498 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47044 * 120.00360 * 3 2 1 7 7 C 1.37879 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00356 * 359.72767 * 7 2 1 10 10 H 1.08994 * 110.67128 * 59.56590 * 9 7 2 11 11 C 1.54897 * 110.75042 * 296.33699 * 9 7 2 12 12 C 1.54470 * 104.09725 * 203.89096 * 11 9 7 13 13 C 1.53869 * 106.68470 * 23.34491 * 12 11 9 14 14 H 1.09008 * 110.07439 * 240.84824 * 13 12 11 15 15 N 1.46501 * 110.03490 * 119.44240 * 13 12 11 16 16 C 1.34772 * 120.00133 * 87.83313 * 15 13 12 17 17 O 1.21590 * 119.99883 * 359.97438 * 16 15 13 18 18 N 1.34780 * 120.00143 * 180.02562 * 16 15 13 19 19 C 1.47426 * 125.64582 * 355.10629 * 18 16 15 20 20 C 1.54907 * 104.83008 * 155.83987 * 19 18 16 21 21 C 1.55155 * 101.58332 * 37.00904 * 20 19 18 22 22 C 1.47020 * 125.65063 * 174.80800 * 18 16 15 23 23 H 1.09008 * 109.87617 * 300.50625 * 22 18 16 24 24 C 1.52999 * 109.88318 * 61.66662 * 22 18 16 25 25 N 1.46901 * 109.46713 * 185.03923 * 24 22 18 26 26 C 1.54270 * 106.60213 * 0.15463 * 13 12 11 27 27 H 0.96996 * 120.00090 * 359.97438 * 1 2 3 28 28 H 1.08990 * 110.48799 * 322.41730 * 11 9 7 29 29 H 1.08996 * 110.48705 * 85.06769 * 11 9 7 30 30 H 1.08994 * 109.85785 * 264.10449 * 12 11 9 31 31 H 1.09002 * 110.15992 * 142.74666 * 12 11 9 32 32 H 0.97003 * 120.00097 * 267.83179 * 15 13 12 33 33 H 1.09003 * 110.36537 * 274.67698 * 19 18 16 34 34 H 1.08996 * 110.36658 * 36.99667 * 19 18 16 35 35 H 1.09001 * 111.00306 * 155.08169 * 20 19 18 36 36 H 1.08993 * 111.00658 * 278.93344 * 20 19 18 37 37 H 1.09002 * 110.72128 * 82.85811 * 21 20 19 38 38 H 1.08994 * 110.72183 * 206.13115 * 21 20 19 39 39 H 1.08991 * 109.47475 * 305.04187 * 24 22 18 40 40 H 1.08999 * 109.46809 * 65.05243 * 24 22 18 41 41 H 1.00900 * 110.99804 * 61.10939 * 25 24 22 42 42 H 1.00908 * 110.99945 * 185.05212 * 25 24 22 43 43 H 1.09002 * 110.48937 * 217.71112 * 26 13 12 44 44 H 1.09000 * 110.48066 * 95.06709 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0073 10 1 0.6077 -2.5766 -0.8691 11 6 0.4255 -2.6495 1.3093 12 6 0.2413 -4.1754 1.4639 13 6 1.3858 -4.8403 0.6795 14 1 0.9804 -5.4645 -0.1170 15 7 2.2084 -5.6502 1.5816 16 6 1.8806 -6.9353 1.8211 17 8 0.9020 -7.4224 1.2889 18 7 2.6371 -7.6802 2.6515 19 6 3.8990 -7.2511 3.2814 20 6 4.0300 -8.1332 4.5479 21 6 3.4643 -9.4873 4.0443 22 6 2.3373 -9.0530 3.0839 23 1 1.3776 -9.0776 3.6003 24 6 2.3028 -9.9848 1.8710 25 7 1.8849 -11.3273 2.2967 26 6 2.2297 -3.6977 0.0776 27 1 -0.4850 0.8400 0.0004 28 1 0.9758 -2.2452 2.1588 29 1 -0.5400 -2.1539 1.2082 30 1 -0.7203 -4.4762 1.0482 31 1 0.2973 -4.4559 2.5157 32 1 2.9890 -5.2614 2.0065 33 1 4.7381 -7.4270 2.6081 34 1 3.8467 -6.1977 3.5564 35 1 5.0730 -8.2330 4.8484 36 1 3.4262 -7.7369 5.3642 37 1 4.2310 -10.0524 3.5143 38 1 3.0593 -10.0682 4.8729 39 1 1.5952 -9.5997 1.1369 40 1 3.2961 -10.0379 1.4253 41 1 0.9590 -11.3077 2.6972 42 1 1.9332 -11.9812 1.5297 43 1 2.5777 -3.9651 -0.9202 44 1 3.0733 -3.4638 0.7270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891932772.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -41.233662 kcal Electronic energy + Delta-G solvation = -22682.107960 eV Core-core repulsion = 19440.371387 eV Total energy + Delta-G solvation = -3241.736573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37167 -38.23246 -36.71563 -34.63587 -33.50481 -32.14429 -31.16163 -29.12940 -28.11628 -26.87558 -24.70390 -23.82943 -22.59000 -21.26812 -19.89910 -19.56631 -18.93122 -17.87107 -16.72410 -16.33779 -15.95751 -15.30942 -14.79937 -14.64579 -14.46994 -14.25644 -14.17331 -13.95034 -13.25123 -12.89572 -12.62176 -12.50893 -12.31361 -11.85193 -11.74399 -11.43076 -11.22483 -11.09488 -10.99250 -10.91350 -10.88642 -10.59664 -10.29105 -9.96204 -9.79962 -9.52069 -9.21232 -8.96356 -8.81012 -8.70368 -8.38828 -8.32456 -6.00383 -4.03822 2.70657 3.31284 3.36616 3.38351 3.40078 4.08991 4.35684 4.43684 4.50652 4.55262 4.71531 4.94369 5.16201 5.24164 5.31646 5.39311 5.51422 5.53948 5.59974 5.70944 5.72811 5.80205 5.85200 5.87055 6.08000 6.25807 6.36274 6.39984 6.62361 6.69772 6.76594 6.87043 6.92466 6.99060 7.18766 7.19189 7.29518 7.39253 7.71835 7.88522 8.03256 8.19415 8.43360 8.83537 8.98186 9.60111 11.08973 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033891 B = 0.003406 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.978410 B = 8218.607468 C = 8658.667094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.034 0.966 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.156 3.844 14 H 0.079 0.921 15 N -0.731 5.731 16 C 0.719 3.281 17 O -0.592 6.592 18 N -0.638 5.638 19 C 0.099 3.901 20 C -0.136 4.136 21 C -0.112 4.112 22 C 0.161 3.839 23 H 0.069 0.931 24 C 0.047 3.953 25 N -0.848 5.848 26 C -0.120 4.120 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.392 0.608 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.340 0.660 42 H 0.342 0.658 43 H 0.053 0.947 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 -18.020 8.187 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.052 0.948 11 C -0.139 4.139 12 C -0.174 4.174 13 C 0.052 3.948 14 H 0.097 0.903 15 N -0.385 5.385 16 C 0.421 3.579 17 O -0.470 6.470 18 N -0.378 5.378 19 C -0.024 4.024 20 C -0.174 4.174 21 C -0.150 4.150 22 C 0.056 3.944 23 H 0.087 0.913 24 C -0.085 4.085 25 N -0.377 5.377 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.227 0.773 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.071 0.929 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.113 -18.133 8.199 21.133 hybrid contribution 0.070 1.294 -0.439 1.368 sum 7.183 -16.839 7.760 19.884 Atomic orbital electron populations 1.69950 1.05871 1.26567 1.50266 1.24979 0.94832 0.98992 0.95093 0.86701 0.79615 0.83364 0.78534 1.20323 1.21361 1.20360 1.21058 0.92691 0.90460 1.51120 0.92734 1.19544 0.92165 0.90937 0.94038 0.94827 1.22350 1.01538 0.90403 0.99592 1.22690 0.97345 0.98723 0.98604 1.21746 0.91241 0.91148 0.90691 0.90264 1.45581 1.32215 1.09789 1.50868 1.15559 0.82091 0.81165 0.79053 1.90876 1.29160 1.72322 1.54691 1.47647 1.24899 1.15013 1.50241 1.22260 0.86663 0.99235 0.94251 1.22807 1.01998 0.95608 0.96964 1.22562 0.97351 0.96505 0.98593 1.21244 0.98804 0.80134 0.94207 0.91287 1.22187 1.01063 0.88480 0.96764 1.58685 1.33055 1.08419 1.37555 1.22758 0.98915 0.95365 0.98816 0.92999 0.93588 0.91392 0.92659 0.93300 0.77338 0.91563 0.90839 0.89901 0.90625 0.90341 0.90053 0.93149 0.91324 0.84828 0.84608 0.92853 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 12.19 55.43 0.68 -24.70 16 2 C 0.06 1.73 5.34 -17.82 -0.10 1.63 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -13.84 8.52 -34.44 -0.29 -14.13 16 8 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 9 C 0.05 1.27 2.77 -89.78 -0.25 1.02 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 11 C -0.10 -2.33 5.67 -24.96 -0.14 -2.48 16 12 C -0.13 -2.71 6.60 -25.51 -0.17 -2.87 16 13 C 0.16 2.93 3.25 -66.81 -0.22 2.71 16 14 H 0.08 1.58 7.56 -51.92 -0.39 1.19 16 15 N -0.73 -11.75 4.94 -57.58 -0.28 -12.04 16 16 C 0.72 11.96 8.30 -86.92 -0.72 11.24 16 17 O -0.59 -11.92 14.79 5.29 0.08 -11.84 16 18 N -0.64 -8.15 3.07 -168.70 -0.52 -8.67 16 19 C 0.10 0.93 6.68 -2.53 -0.02 0.91 16 20 C -0.14 -1.00 7.08 -24.58 -0.17 -1.18 16 21 C -0.11 -0.92 6.28 -24.90 -0.16 -1.07 16 22 C 0.16 1.80 3.13 -66.96 -0.21 1.59 16 23 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 24 C 0.05 0.53 6.17 -3.82 -0.02 0.50 16 25 N -0.85 -7.45 9.40 -10.37 -0.10 -7.55 16 26 C -0.12 -2.40 5.95 -25.07 -0.15 -2.55 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 29 H 0.07 1.73 7.49 -51.93 -0.39 1.34 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.39 5.45 6.76 -40.82 -0.28 5.17 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.66 7.12 -51.93 -0.37 0.29 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.63 7.77 -51.93 -0.40 0.23 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.73 6.55 -51.93 -0.34 0.39 16 40 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 41 H 0.34 2.81 9.05 -39.29 -0.36 2.45 16 42 H 0.34 2.54 9.08 -39.29 -0.36 2.18 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.14 7.64 -51.93 -0.40 0.75 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -30.71 345.18 -10.03 -40.73 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.45 Total: 7.52 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.62 Total: -4.68 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.22 Total: -52.95 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.71 -10.03 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891932772.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.500 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds