Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48500 * 109.46836 * 274.99505 * 3 2 1 5 5 H 1.48494 * 109.47513 * 34.99657 * 3 2 1 6 6 H 1.48501 * 109.47210 * 155.00230 * 3 2 1 7 7 C 1.37882 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00173 * 175.13685 * 7 2 1 9 9 C 1.50700 * 119.99822 * 355.13318 * 7 2 1 10 10 C 1.53039 * 109.45807 * 185.41734 * 9 7 2 11 11 C 1.53197 * 109.31077 * 178.63024 * 10 9 7 12 12 N 1.46914 * 108.77611 * 54.63635 * 11 10 9 13 13 C 1.34783 * 120.63250 * 126.36530 * 12 11 10 14 14 O 1.21584 * 120.00143 * 185.27339 * 13 12 11 15 15 N 1.34775 * 119.99875 * 5.28128 * 13 12 11 16 16 C 1.46497 * 120.00386 * 175.01931 * 15 13 12 17 17 C 1.52996 * 109.47362 * 179.97438 * 16 15 13 18 18 H 1.09006 * 112.84596 * 316.18823 * 17 16 15 19 19 C 1.53775 * 113.69308 * 87.46257 * 17 16 15 20 20 C 1.53785 * 87.08146 * 139.99413 * 19 17 16 21 21 H 1.08992 * 113.61494 * 89.11570 * 20 19 17 22 22 N 1.46901 * 113.61306 * 220.02303 * 20 19 17 23 23 C 1.53779 * 87.08159 * 334.56559 * 20 19 17 24 24 C 1.46927 * 118.74004 * 306.64466 * 12 11 10 25 25 C 1.52760 * 109.00893 * 53.30655 * 24 12 11 26 26 H 0.96997 * 120.00578 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46027 * 305.39463 * 9 7 2 28 28 H 1.09000 * 109.49829 * 58.67787 * 10 9 7 29 29 H 1.08996 * 109.52635 * 298.59805 * 10 9 7 30 30 H 1.09000 * 109.58558 * 294.84333 * 11 10 9 31 31 H 1.09001 * 109.70167 * 174.49330 * 11 10 9 32 32 H 0.97004 * 119.99838 * 355.01814 * 15 13 12 33 33 H 1.09003 * 109.47019 * 59.99186 * 16 15 13 34 34 H 1.09002 * 109.46729 * 299.99908 * 16 15 13 35 35 H 1.09005 * 113.61423 * 254.53727 * 19 17 16 36 36 H 1.09003 * 113.61570 * 25.36279 * 19 17 16 37 37 H 1.00900 * 110.99722 * 277.49330 * 22 20 19 38 38 H 1.00895 * 111.00207 * 41.44462 * 22 20 19 39 39 H 1.09000 * 113.61745 * 270.88870 * 23 20 19 40 40 H 1.08994 * 113.61735 * 139.97982 * 23 20 19 41 41 H 1.09001 * 109.59079 * 173.14692 * 24 12 11 42 42 H 1.09002 * 109.58529 * 293.56639 * 24 12 11 43 43 H 1.09002 * 109.56317 * 185.55707 * 25 24 12 44 44 H 1.08999 * 109.35888 * 65.50604 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5916 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0788 9 6 1.2551 -2.4968 0.1118 10 6 2.2534 -3.6512 0.2246 11 6 1.4881 -4.9702 0.3720 12 7 0.5436 -5.0963 -0.7462 13 6 0.5441 -6.1965 -1.5248 14 8 -0.1750 -6.2488 -2.5038 15 7 1.3415 -7.2388 -1.2180 16 6 1.2633 -8.4758 -1.9989 17 6 2.2666 -9.4910 -1.4481 18 1 3.2385 -9.0491 -1.2281 19 6 1.7083 -10.3528 -0.3034 20 6 2.4516 -11.5394 -0.9394 21 1 3.4738 -11.6575 -0.5802 22 7 1.6879 -12.7941 -0.9137 23 6 2.3513 -10.7846 -2.2754 24 6 -0.3974 -3.9976 -1.0035 25 6 0.3852 -2.6920 -1.1320 26 1 -0.4851 0.8400 0.0004 27 1 0.6215 -2.4766 0.9985 28 1 2.8881 -3.4994 1.0977 29 1 2.8713 -3.6874 -0.6725 30 1 0.9408 -4.9717 1.3146 31 1 2.1884 -5.8052 0.3547 32 1 1.9674 -7.1699 -0.4801 33 1 1.4981 -8.2625 -3.0418 34 1 0.2557 -8.8859 -1.9299 35 1 2.0901 -10.0744 0.6790 36 1 0.6232 -10.4546 -0.3226 37 1 1.7811 -13.2558 -0.0214 38 1 0.7175 -12.6314 -1.1371 39 1 1.4421 -11.0055 -2.8346 40 1 3.2520 -10.8547 -2.8852 41 1 -0.9393 -4.1899 -1.9295 42 1 -1.1017 -3.9183 -0.1754 43 1 -0.3098 -1.8575 -1.2246 44 1 1.0203 -2.7370 -2.0168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892556481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = -17.976932 kcal Electronic energy + Delta-G solvation = -22343.770085 eV Core-core repulsion = 19103.041999 eV Total energy + Delta-G solvation = -3240.728086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17560 -39.36177 -36.91390 -34.61184 -33.48837 -32.16461 -31.01398 -30.13533 -27.38587 -26.02299 -25.82121 -23.04598 -22.41885 -21.71464 -20.38496 -19.86079 -18.75943 -17.67830 -16.57661 -16.35226 -16.00706 -15.40125 -15.14083 -14.91861 -14.55926 -13.97936 -13.88340 -13.59998 -13.16032 -12.83323 -12.79170 -12.68335 -12.43103 -12.27471 -11.98711 -11.80863 -11.36778 -11.11729 -10.95389 -10.94675 -10.66330 -10.59656 -10.42465 -10.06719 -9.74485 -9.54422 -9.17587 -9.02568 -8.93535 -8.87183 -8.37355 -7.87231 -6.02327 -4.08001 3.02205 3.28541 3.36101 3.38898 3.58251 4.05245 4.20188 4.23982 4.35504 4.41572 4.55855 4.57518 5.04977 5.17203 5.28105 5.36616 5.39854 5.42447 5.55401 5.61767 5.73357 5.75906 5.85187 5.87871 6.04843 6.10986 6.26810 6.43519 6.50574 6.61287 6.69083 6.73362 6.82275 6.98657 7.05116 7.15490 7.24864 7.50963 7.70696 7.93064 8.04367 8.33119 8.40691 8.95641 8.97225 9.56879 11.03983 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041354 B = 0.003019 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.923630 B = 9271.943783 C = 9574.250831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.618 5.618 13 C 0.704 3.296 14 O -0.602 6.602 15 N -0.752 5.752 16 C 0.152 3.848 17 C -0.122 4.122 18 H 0.097 0.903 19 C -0.173 4.173 20 C 0.071 3.929 21 H 0.102 0.898 22 N -0.841 5.841 23 C -0.122 4.122 24 C 0.126 3.874 25 C -0.122 4.122 26 H 0.260 0.740 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.394 0.606 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.341 0.659 38 H 0.343 0.657 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -20.398 1.294 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.355 5.355 13 C 0.405 3.595 14 O -0.481 6.481 15 N -0.411 5.411 16 C 0.027 3.973 17 C -0.142 4.142 18 H 0.115 0.885 19 C -0.213 4.213 20 C -0.041 4.041 21 H 0.120 0.880 22 N -0.369 5.369 23 C -0.160 4.160 24 C 0.004 3.996 25 C -0.160 4.160 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.542 -20.565 -0.001 20.868 hybrid contribution 0.294 1.550 1.191 1.977 sum 3.836 -19.015 1.190 19.434 Atomic orbital electron populations 1.69874 1.05874 1.26504 1.50547 1.24971 0.94843 0.99072 0.95082 0.86619 0.79949 0.83702 0.77953 1.20823 1.21203 1.19953 1.21172 0.93116 0.90640 1.50290 0.92776 1.18631 0.92570 0.91436 0.94262 1.22016 0.98988 0.94356 1.00847 1.21698 0.91330 0.98760 0.89148 1.47438 1.38512 1.17773 1.31766 1.15888 0.80764 0.80144 0.82698 1.90861 1.46435 1.82163 1.28660 1.45279 1.43783 1.14150 1.37843 1.21080 0.98327 0.82636 0.95234 1.22658 0.99553 0.94464 0.97482 0.88498 1.23926 1.00750 0.98104 0.98518 1.22858 0.97880 0.86702 0.96709 0.88016 1.58662 1.16227 1.24381 1.37627 1.23039 1.03042 0.93504 0.96458 1.21668 0.90896 0.86221 1.00787 1.21939 0.99956 0.94618 0.99521 0.92966 0.95259 0.92132 0.92962 0.92001 0.92370 0.76974 0.91695 0.92029 0.91394 0.89899 0.84651 0.84423 0.89501 0.90801 0.90568 0.92609 0.88329 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 11.53 55.43 0.64 -24.24 16 2 C 0.06 1.67 5.36 -17.82 -0.10 1.58 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.71 8.49 -34.44 -0.29 -14.00 16 8 H 0.05 1.43 7.75 -52.49 -0.41 1.03 16 9 C 0.05 1.18 2.01 -91.73 -0.18 0.99 16 10 C -0.12 -2.38 5.30 -26.61 -0.14 -2.53 16 11 C 0.11 1.82 6.39 -3.71 -0.02 1.80 16 12 N -0.62 -11.39 2.98 -178.77 -0.53 -11.92 16 13 C 0.70 12.88 8.30 -86.91 -0.72 12.16 16 14 O -0.60 -13.18 15.77 5.29 0.08 -13.10 16 15 N -0.75 -10.19 5.46 -65.23 -0.36 -10.55 16 16 C 0.15 1.74 5.52 -4.05 -0.02 1.72 16 17 C -0.12 -0.98 3.75 -89.81 -0.34 -1.32 16 18 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.17 -1.23 7.35 -25.92 -0.19 -1.42 16 20 C 0.07 0.47 5.01 -66.90 -0.33 0.14 16 21 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 22 N -0.84 -5.41 9.64 -3.98 -0.04 -5.45 16 23 C -0.12 -0.90 7.43 -25.92 -0.19 -1.09 16 24 C 0.13 2.59 6.41 -3.93 -0.03 2.56 16 25 C -0.12 -2.84 5.18 -26.84 -0.14 -2.98 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.74 5.64 -51.93 -0.29 0.44 16 32 H 0.39 4.48 5.96 -40.82 -0.24 4.24 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.63 7.80 -51.93 -0.40 0.23 16 37 H 0.34 1.72 9.08 -39.29 -0.36 1.37 16 38 H 0.34 2.00 8.84 -39.29 -0.35 1.65 16 39 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.61 6.99 -51.93 -0.36 1.25 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 2.56 6.30 -51.93 -0.33 2.23 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -30.86 344.91 -10.08 -40.94 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.36 Total: 5.54 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -2.70 Total: -2.38 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.29 Total: -52.16 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.86 -10.08 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892556481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.966 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds