Wall clock time and date at job start Tue Mar 31 2020 05:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00108 * 2 1 4 4 H 1.48499 * 109.47331 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47369 * 300.00146 * 3 2 1 6 6 H 1.48499 * 109.47232 * 59.99938 * 3 2 1 7 7 C 1.37869 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.53045 * 109.45990 * 180.02562 * 9 7 2 11 11 C 1.53184 * 109.30914 * 178.62539 * 10 9 7 12 12 N 1.46925 * 108.77723 * 54.63491 * 11 10 9 13 13 C 1.34777 * 120.63159 * 126.36591 * 12 11 10 14 14 O 1.21585 * 120.00124 * 185.23112 * 13 12 11 15 15 N 1.34777 * 120.00203 * 5.22485 * 13 12 11 16 16 C 1.46495 * 120.00509 * 175.01592 * 15 13 12 17 17 C 1.52999 * 109.47345 * 180.02562 * 16 15 13 18 18 H 1.08995 * 112.85487 * 316.19853 * 17 16 15 19 19 C 1.53784 * 113.61363 * 87.50832 * 17 16 15 20 20 C 1.53781 * 87.08345 * 139.98097 * 19 17 16 21 21 H 1.09003 * 113.68710 * 220.00596 * 20 19 17 22 22 N 1.46893 * 113.61665 * 89.11292 * 20 19 17 23 23 C 1.53781 * 113.61326 * 184.99870 * 17 16 15 24 24 C 1.46923 * 118.73937 * 306.64029 * 12 11 10 25 25 C 1.52765 * 109.00433 * 53.31020 * 24 12 11 26 26 H 0.97001 * 119.99440 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.45448 * 299.96841 * 9 7 2 28 28 H 1.09004 * 109.49746 * 58.67383 * 10 9 7 29 29 H 1.08996 * 109.52274 * 298.59799 * 10 9 7 30 30 H 1.08999 * 109.59403 * 294.84818 * 11 10 9 31 31 H 1.09007 * 109.70106 * 174.49024 * 11 10 9 32 32 H 0.97006 * 119.99643 * 355.02322 * 15 13 12 33 33 H 1.09002 * 109.47319 * 300.00757 * 16 15 13 34 34 H 1.09006 * 109.47069 * 60.00351 * 16 15 13 35 35 H 1.09004 * 113.60911 * 254.53357 * 19 17 16 36 36 H 1.09007 * 113.61530 * 25.42651 * 19 17 16 37 37 H 1.00903 * 111.00015 * 82.50012 * 22 20 19 38 38 H 1.00897 * 111.00413 * 206.45546 * 22 20 19 39 39 H 1.09001 * 113.62078 * 334.57183 * 23 17 16 40 40 H 1.09003 * 113.61161 * 105.47199 * 23 17 16 41 41 H 1.09004 * 109.58743 * 173.14204 * 24 12 11 42 42 H 1.08992 * 109.58704 * 293.57283 * 24 12 11 43 43 H 1.09000 * 109.56209 * 185.55217 * 25 24 12 44 44 H 1.09001 * 109.39087 * 65.51694 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2457 -3.6622 -0.0015 11 6 1.4766 -4.9866 0.0320 12 7 0.5232 -5.0082 -1.0857 13 6 0.5136 -6.0335 -1.9604 14 8 -0.2135 -5.9952 -2.9341 15 7 1.3102 -7.1012 -1.7559 16 6 1.2214 -8.2624 -2.6447 17 6 2.2250 -9.3263 -2.1957 18 1 3.2001 -8.9092 -1.9442 19 6 1.6700 -10.2860 -1.1298 20 6 2.4038 -11.4131 -1.8754 21 1 1.8342 -12.3404 -1.9373 22 7 3.7838 -11.6208 -1.4170 23 6 2.2985 -10.5401 -3.1370 24 6 -0.4155 -3.8879 -1.2352 25 6 0.3711 -2.5785 -1.2513 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5575 0.8884 28 1 2.8875 -3.5919 0.8768 29 1 2.8568 -3.6190 -0.9029 30 1 0.9362 -5.0717 0.9748 31 1 2.1736 -5.8189 -0.0661 32 1 1.9423 -7.1009 -1.0201 33 1 0.2131 -8.6745 -2.6045 34 1 1.4484 -7.9564 -3.6660 35 1 2.0591 -10.0989 -0.1289 36 1 0.5844 -10.3823 -1.1518 37 1 3.8069 -12.1973 -0.5891 38 1 4.3525 -12.0176 -2.1499 39 1 1.3849 -10.7060 -3.7079 40 1 3.1951 -10.5584 -3.7567 41 1 -0.9650 -3.9939 -2.1707 42 1 -1.1132 -3.8815 -0.3979 43 1 -0.3213 -1.7368 -1.2627 44 1 0.9994 -2.5447 -2.1414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892571283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:09 Heat of formation + Delta-G solvation = -14.605623 kcal Electronic energy + Delta-G solvation = -22396.763550 eV Core-core repulsion = 19156.181655 eV Total energy + Delta-G solvation = -3240.581895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09112 -39.27627 -36.86292 -34.53005 -33.46314 -32.05531 -30.96199 -30.06718 -27.38530 -26.01856 -25.78751 -23.03129 -22.52284 -21.83528 -20.19221 -19.37713 -18.64968 -17.66449 -16.31516 -16.28752 -15.94924 -15.55836 -15.28055 -14.90670 -14.55409 -14.22928 -13.78937 -13.47472 -13.17092 -12.88295 -12.66884 -12.60101 -12.43495 -12.16476 -11.77719 -11.55149 -11.16366 -11.08742 -10.94000 -10.90781 -10.59754 -10.48232 -10.37916 -10.01866 -9.69051 -9.51944 -9.13903 -9.03378 -8.88143 -8.80754 -8.33586 -7.81911 -5.98830 -4.05352 3.10080 3.29890 3.38334 3.41751 3.64789 3.99148 4.19905 4.29525 4.43894 4.48443 4.57779 4.70749 5.20934 5.23731 5.30994 5.43636 5.44876 5.51828 5.63496 5.68977 5.80849 5.82811 5.91510 6.01770 6.09909 6.19342 6.32323 6.48084 6.55487 6.66947 6.77515 6.79529 6.88035 7.00194 7.03461 7.21424 7.30140 7.56054 7.75249 7.97509 8.10413 8.40003 8.44110 8.98199 9.03814 9.59609 11.06598 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034923 B = 0.003151 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.562960 B = 8884.665754 C = 9313.136897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.114 3.886 12 N -0.619 5.619 13 C 0.704 3.296 14 O -0.603 6.603 15 N -0.751 5.751 16 C 0.148 3.852 17 C -0.109 4.109 18 H 0.101 0.899 19 C -0.128 4.128 20 C 0.059 3.941 21 H 0.046 0.954 22 N -0.833 5.833 23 C -0.127 4.127 24 C 0.127 3.873 25 C -0.124 4.124 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.395 0.605 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.344 0.656 38 H 0.343 0.657 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 -21.830 -1.516 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.355 5.355 13 C 0.405 3.595 14 O -0.483 6.483 15 N -0.409 5.409 16 C 0.023 3.977 17 C -0.128 4.128 18 H 0.119 0.881 19 C -0.166 4.166 20 C -0.053 4.053 21 H 0.063 0.937 22 N -0.364 5.364 23 C -0.165 4.165 24 C 0.005 3.995 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.231 0.769 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.716 -20.882 -2.125 21.316 hybrid contribution 0.673 -0.064 0.218 0.710 sum 4.389 -20.946 -1.907 21.486 Atomic orbital electron populations 1.69861 1.05842 1.26326 1.50874 1.24967 0.94864 0.99064 0.95139 0.86568 0.80127 0.83937 0.77536 1.19872 1.21074 1.21086 1.21230 0.92895 0.90618 1.50277 0.92720 1.18625 0.92584 0.91518 0.94177 1.22011 0.98944 0.94383 1.00880 1.21695 0.91187 0.98894 0.89166 1.47443 1.38230 1.21446 1.28400 1.15893 0.80818 0.80009 0.82775 1.90854 1.46065 1.81158 1.30205 1.45274 1.43319 1.17029 1.35308 1.21163 0.98495 0.84396 0.93650 1.22658 0.99574 0.93564 0.97023 0.88101 1.23076 0.99436 0.95300 0.98779 1.22374 0.89655 0.96264 0.96970 0.93655 1.58495 1.09962 1.57683 1.10262 1.22996 1.02517 0.95292 0.95683 1.21660 0.90972 0.85718 1.01173 1.21943 1.00118 0.94999 0.99194 0.93034 0.95488 0.92191 0.92924 0.92017 0.92272 0.76887 0.92074 0.91910 0.90905 0.89746 0.84375 0.84347 0.89380 0.90943 0.90602 0.92659 0.87880 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.31 55.43 0.63 -24.41 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.51 -13.79 8.56 -34.44 -0.29 -14.09 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 10 C -0.12 -2.44 5.30 -26.61 -0.14 -2.58 16 11 C 0.11 1.88 6.39 -3.72 -0.02 1.86 16 12 N -0.62 -11.67 2.98 -178.77 -0.53 -12.20 16 13 C 0.70 13.22 8.30 -86.92 -0.72 12.50 16 14 O -0.60 -13.45 15.77 5.29 0.08 -13.36 16 15 N -0.75 -10.67 5.46 -65.23 -0.36 -11.02 16 16 C 0.15 1.78 5.52 -4.04 -0.02 1.75 16 17 C -0.11 -0.99 3.67 -89.81 -0.33 -1.32 16 18 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 19 C -0.13 -1.04 7.43 -25.92 -0.19 -1.24 16 20 C 0.06 0.41 5.04 -66.90 -0.34 0.08 16 21 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 22 N -0.83 -5.28 9.47 -3.98 -0.04 -5.32 16 23 C -0.13 -0.95 7.43 -25.92 -0.19 -1.14 16 24 C 0.13 2.65 6.41 -3.93 -0.03 2.62 16 25 C -0.12 -2.94 5.14 -26.83 -0.14 -3.08 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.79 5.64 -51.93 -0.29 0.49 16 32 H 0.39 4.83 5.96 -40.82 -0.24 4.58 16 33 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 37 H 0.34 1.74 9.08 -39.29 -0.36 1.39 16 38 H 0.34 1.74 9.07 -39.29 -0.36 1.38 16 39 H 0.09 0.62 8.10 -51.93 -0.42 0.19 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.63 6.99 -51.93 -0.36 1.27 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -31.12 344.62 -10.10 -41.22 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.36 Total: 5.84 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.70 Total: -2.07 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.30 Total: -52.96 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.12 -10.10 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892571283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.617 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds