Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47902 * 110.99944 * 2 1 4 4 C 1.53558 * 106.90443 * 148.24195 * 3 2 1 5 5 H 1.08994 * 112.42143 * 116.42858 * 4 3 2 6 6 C 1.53889 * 110.01367 * 241.66676 * 4 3 2 7 7 C 1.53859 * 103.93727 * 138.87967 * 6 4 3 8 8 N 1.46723 * 106.63308 * 332.29577 * 7 6 4 9 9 C 1.34769 * 125.24465 * 199.08434 * 8 7 6 10 10 O 1.21592 * 120.00233 * 179.69348 * 9 8 7 11 11 N 1.34779 * 120.00056 * 359.69445 * 9 8 7 12 12 C 1.46497 * 120.00021 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47333 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47535 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.46997 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.46779 * 109.51160 * 18.82081 * 8 7 6 24 24 H 1.08997 * 112.20479 * 121.81609 * 23 8 7 25 25 C 1.48334 * 111.00063 * 117.27619 * 2 1 3 26 26 H 1.08991 * 109.47147 * 59.99642 * 1 2 3 27 27 H 1.08998 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46962 * 299.99812 * 1 2 3 29 29 H 1.08994 * 109.97552 * 28.87785 * 3 2 1 30 30 H 1.09000 * 110.00635 * 267.62000 * 3 2 1 31 31 H 1.09000 * 110.54832 * 257.66542 * 6 4 3 32 32 H 1.08991 * 110.55040 * 20.34109 * 6 4 3 33 33 H 1.09000 * 110.09471 * 212.94429 * 7 6 4 34 34 H 1.09004 * 109.90021 * 91.54545 * 7 6 4 35 35 H 0.96994 * 119.99487 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.46979 * 60.00120 * 12 11 9 37 37 H 1.09004 * 109.47608 * 300.00243 * 12 11 9 38 38 H 1.09005 * 109.46889 * 60.00189 * 13 12 11 39 39 H 1.09002 * 109.47401 * 300.00278 * 13 12 11 40 40 H 1.09005 * 109.46767 * 60.00250 * 14 13 12 41 41 H 1.09002 * 109.47113 * 300.00590 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.08997 * 110.53270 * 82.31213 * 25 2 1 44 44 H 1.09001 * 110.52777 * 319.55253 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3254 1.3500 0.7733 5 1 4.1780 1.6117 0.1469 6 6 3.2318 2.2532 2.0157 7 6 3.9424 1.4454 3.1156 8 7 3.7890 0.0296 2.7623 9 6 3.9349 -1.0046 3.6139 10 8 3.7799 -2.1441 3.2189 11 7 4.2527 -0.7760 4.9036 12 6 4.4109 -1.9002 5.8295 13 6 4.7694 -1.3700 7.2191 14 6 4.9339 -2.5441 8.1863 15 6 5.2877 -2.0217 9.5548 16 1 5.3850 -0.9587 9.7186 17 6 5.4871 -2.9011 10.5980 18 7 5.7954 -2.4452 11.7925 19 14 5.3195 -4.7398 10.3145 20 1 3.9148 -5.1529 10.5622 21 1 5.6900 -5.0604 8.9126 22 1 6.2207 -5.4680 11.2435 23 6 3.4458 -0.0863 1.3399 24 1 4.1680 -0.6896 0.7898 25 6 2.0007 -0.6346 1.2308 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.2951 2.0498 0.4947 30 1 2.1724 1.7137 -1.0233 31 1 3.7446 3.1990 1.8406 32 1 2.1900 2.4280 2.2840 33 1 3.4792 1.6415 4.0826 34 1 4.9992 1.7104 3.1464 35 1 4.3760 0.1330 5.2188 36 1 5.2071 -2.5544 5.4740 37 1 3.4774 -2.4605 5.8837 38 1 3.9735 -0.7156 7.5748 39 1 5.7030 -0.8101 7.1647 40 1 5.7297 -3.1988 7.8308 41 1 4.0001 -3.1037 8.2406 42 1 5.9353 -3.0639 12.5264 43 1 2.0102 -1.7197 1.1280 44 1 1.4124 -0.3371 2.0989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892790536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = -24.613068 kcal Electronic energy + Delta-G solvation = -22226.699211 eV Core-core repulsion = 18985.683361 eV Total energy + Delta-G solvation = -3241.015850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01913 -39.00728 -36.23676 -35.46064 -33.32911 -32.38185 -31.34479 -30.37573 -28.11381 -26.85336 -25.74914 -23.57750 -22.50133 -21.50586 -20.66852 -20.47778 -19.50727 -18.17985 -16.89455 -16.60140 -15.96657 -15.71862 -15.15656 -14.91725 -14.78387 -14.34177 -13.99243 -13.83674 -13.64610 -13.53165 -13.07592 -12.73774 -12.56870 -12.38364 -12.00406 -11.94510 -11.86301 -11.80970 -11.40621 -11.14945 -11.06802 -11.01353 -10.88646 -10.26690 -10.00621 -9.82265 -9.68142 -9.22858 -9.03147 -8.80673 -8.55739 -8.53303 -6.06469 -4.05113 2.54351 3.25320 3.31782 3.39319 3.44095 3.69564 3.85282 4.08699 4.23283 4.28015 4.44724 4.68062 4.77035 4.88411 4.97754 5.06311 5.09693 5.18323 5.27804 5.30864 5.35517 5.39976 5.51098 5.53071 5.56121 5.68724 5.72154 5.78714 5.82004 6.03686 6.09436 6.38446 6.46752 6.49491 6.63169 6.72084 6.82334 7.03788 7.23528 7.36904 7.75647 8.01809 8.50018 8.66892 8.97287 9.55904 11.06774 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034785 B = 0.002904 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.761376 B = 9641.213033 C =10057.405200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.044 3.956 4 C -0.106 4.106 5 H 0.099 0.901 6 C -0.124 4.124 7 C 0.100 3.900 8 N -0.635 5.635 9 C 0.718 3.282 10 O -0.586 6.586 11 N -0.739 5.739 12 C 0.133 3.867 13 C -0.112 4.112 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.264 1.264 22 H -0.288 1.288 23 C 0.161 3.839 24 H 0.096 0.904 25 C 0.031 3.969 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.394 0.606 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.091 0.909 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 11.609 -24.599 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.084 4.084 4 C -0.126 4.126 5 H 0.118 0.882 6 C -0.162 4.162 7 C -0.024 4.024 8 N -0.374 5.374 9 C 0.420 3.580 10 O -0.464 6.464 11 N -0.394 5.394 12 C 0.009 3.991 13 C -0.150 4.150 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.188 1.188 22 H -0.214 1.214 23 C 0.056 3.944 24 H 0.114 0.886 25 C -0.098 4.098 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.550 10.323 -25.084 28.156 hybrid contribution -0.337 0.002 1.005 1.060 sum -7.886 10.325 -24.079 27.361 Atomic orbital electron populations 1.22507 0.87545 1.02488 1.00645 1.64725 1.08427 1.14477 1.36964 1.22886 0.94371 0.90482 1.00696 1.22612 0.98875 0.94355 0.96733 0.88244 1.22490 1.01566 0.98428 0.93744 1.21935 1.00627 0.80971 0.98842 1.47429 1.75337 1.05232 1.09428 1.15510 0.78224 0.83514 0.80743 1.90925 1.58583 1.19908 1.76983 1.45363 1.75105 1.10974 1.07929 1.21531 1.01367 0.87532 0.88631 1.21704 1.01034 1.00467 0.91837 1.19500 0.96641 0.93817 0.94912 1.21096 1.47596 0.95382 0.91902 0.91035 1.25031 0.94479 0.98975 0.95007 1.69914 1.48350 1.35069 1.00913 0.86773 0.78264 0.85649 0.78609 1.20245 1.18834 1.21377 1.22108 0.95820 0.95920 0.80599 0.88595 1.23593 0.94482 1.01007 0.90708 0.91222 0.91056 0.95389 0.93227 0.89954 0.89492 0.90732 0.90897 0.91433 0.77181 0.91888 0.91966 0.92232 0.92137 0.96249 0.96713 0.92700 0.89071 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.41 60.07 0.57 0.70 16 2 N -0.52 -4.87 5.57 -239.17 -1.33 -6.20 16 3 C 0.04 0.31 6.27 -2.98 -0.02 0.29 16 4 C -0.11 -0.76 3.86 -88.88 -0.34 -1.10 16 5 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 6 C -0.12 -0.75 6.47 -25.82 -0.17 -0.92 16 7 C 0.10 0.80 6.42 -3.47 -0.02 0.78 16 8 N -0.63 -7.41 2.92 -168.59 -0.49 -7.90 16 9 C 0.72 11.14 8.26 -86.92 -0.72 10.42 16 10 O -0.59 -11.35 16.31 5.29 0.09 -11.26 16 11 N -0.74 -10.76 5.51 -65.23 -0.36 -11.11 16 12 C 0.13 2.26 5.67 -4.05 -0.02 2.24 16 13 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 14 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 15 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 19 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 C 0.16 1.70 3.91 -65.76 -0.26 1.44 16 24 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 25 C 0.03 0.35 5.59 -2.00 -0.01 0.33 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.21 7.99 -51.93 -0.41 -0.20 16 29 H 0.05 0.32 6.83 -51.93 -0.35 -0.03 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.46 7.33 -51.93 -0.38 0.08 16 33 H 0.07 0.55 7.46 -51.93 -0.39 0.16 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.39 4.73 7.01 -40.82 -0.29 4.44 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.59 7.85 -51.93 -0.41 0.18 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -33.38 346.05 -10.11 -43.50 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.66 Total: -0.69 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.68 Total: -1.66 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -1.41 Total: -52.27 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.38 -10.11 -43.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892790536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.885 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds