Wall clock time and date at job start Tue Mar 31 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.47768 * 111.26056 * 2 1 4 4 C 1.53564 * 107.09889 * 212.00735 * 3 2 1 5 5 H 1.09002 * 112.41623 * 243.04324 * 4 3 2 6 6 C 1.53883 * 110.01591 * 117.81458 * 4 3 2 7 7 C 1.54038 * 103.86391 * 220.91781 * 6 4 3 8 8 N 1.46730 * 106.52731 * 28.03211 * 7 6 4 9 9 C 1.34787 * 125.23581 * 160.78521 * 8 7 6 10 10 O 1.21587 * 119.99399 * 180.02562 * 9 8 7 11 11 N 1.34767 * 120.00011 * 0.02830 * 9 8 7 12 12 C 1.46500 * 119.99818 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47373 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46573 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00167 * 359.72054 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 89.99430 * 19 17 15 21 21 H 1.48494 * 109.47031 * 209.99977 * 19 17 15 22 22 H 1.48504 * 109.46680 * 329.99678 * 19 17 15 23 23 C 1.46770 * 109.52135 * 341.05277 * 8 7 6 24 24 H 1.09004 * 112.20502 * 238.20135 * 23 8 7 25 25 C 1.48335 * 111.00558 * 242.49551 * 2 1 3 26 26 H 1.09008 * 109.46978 * 177.63496 * 1 2 3 27 27 H 1.08994 * 109.47709 * 297.62952 * 1 2 3 28 28 H 1.08999 * 109.47461 * 57.63465 * 1 2 3 29 29 H 1.09002 * 110.30770 * 92.34046 * 3 2 1 30 30 H 1.08993 * 109.44523 * 331.19099 * 3 2 1 31 31 H 1.09004 * 110.54825 * 102.32202 * 6 4 3 32 32 H 1.09000 * 110.67112 * 339.57599 * 6 4 3 33 33 H 1.08995 * 110.04886 * 268.77026 * 7 6 4 34 34 H 1.08997 * 110.08601 * 147.31725 * 7 6 4 35 35 H 0.97003 * 120.00651 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47175 * 59.99847 * 12 11 9 37 37 H 1.08996 * 109.47197 * 300.00089 * 12 11 9 38 38 H 1.09000 * 109.46866 * 59.99938 * 13 12 11 39 39 H 1.09001 * 109.46611 * 300.00055 * 13 12 11 40 40 H 1.09000 * 109.47486 * 60.00167 * 14 13 12 41 41 H 1.09001 * 109.47362 * 299.99445 * 14 13 12 42 42 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.52846 * 40.43929 * 25 2 1 44 44 H 1.08996 * 110.64672 * 277.74239 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0047 1.3771 0.0000 4 6 3.3284 1.3466 -0.7780 5 1 4.1825 1.6139 -0.1557 6 6 3.2278 2.2438 -2.0241 7 6 3.9425 1.4329 -3.1215 8 7 3.7889 0.0186 -2.7623 9 6 3.9347 -1.0193 -3.6099 10 8 3.7845 -2.1572 -3.2089 11 7 4.2469 -0.7956 -4.9017 12 6 4.4060 -1.9236 -5.8228 13 6 4.7562 -1.3986 -7.2166 14 6 4.9216 -2.5768 -8.1786 15 6 5.2673 -2.0596 -9.5513 16 1 5.3552 -0.9968 -9.7216 17 6 5.4660 -2.9432 -10.5909 18 7 5.7671 -2.4918 -11.7889 19 14 5.3062 -4.7812 -10.2983 20 1 3.9020 -5.2005 -10.5385 21 1 6.2064 -5.5104 -11.2271 22 1 5.6831 -5.0937 -8.8963 23 6 3.4457 -0.0917 -1.3396 24 1 4.1680 -0.6926 -0.7870 25 6 2.0006 -0.6395 -1.2283 26 1 -0.3633 -1.0269 -0.0424 27 1 -0.3634 0.4765 0.9104 28 1 -0.3634 0.5501 -0.8680 29 1 2.1808 1.7145 1.0214 30 1 1.2970 2.0418 -0.4953 31 1 3.7383 3.1920 -1.8551 32 1 2.1851 2.4145 -2.2922 33 1 4.9994 1.6976 -3.1532 34 1 3.4803 1.6248 -4.0898 35 1 4.3664 0.1123 -5.2217 36 1 3.4744 -2.4876 -5.8709 37 1 5.2058 -2.5731 -5.4672 38 1 5.6877 -0.8345 -7.1688 39 1 3.9560 -0.7494 -7.5719 40 1 3.9900 -3.1406 -8.2263 41 1 5.7217 -3.2263 -7.8235 42 1 5.9066 -3.1134 -12.5205 43 1 1.4124 -0.3456 -2.0976 44 1 2.0101 -1.7244 -1.1234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892790537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:05 Heat of formation + Delta-G solvation = -24.556328 kcal Electronic energy + Delta-G solvation = -22227.087251 eV Core-core repulsion = 18986.073861 eV Total energy + Delta-G solvation = -3241.013390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01893 -39.00931 -36.23423 -35.46058 -33.32975 -32.37937 -31.34374 -30.37164 -28.11266 -26.85253 -25.75546 -23.57959 -22.50314 -21.50175 -20.67190 -20.47929 -19.50561 -18.17998 -16.89711 -16.60091 -15.96590 -15.72102 -15.15951 -14.90900 -14.78413 -14.34222 -13.99241 -13.83739 -13.64253 -13.53120 -13.07265 -12.73854 -12.57332 -12.38292 -11.99940 -11.94793 -11.86516 -11.81726 -11.40743 -11.14747 -11.06992 -11.01668 -10.88679 -10.26681 -10.00612 -9.82337 -9.68175 -9.22859 -9.03098 -8.79504 -8.55727 -8.53142 -6.06470 -4.05125 2.54341 3.25344 3.31784 3.39321 3.44070 3.68860 3.85138 4.08446 4.23623 4.28081 4.44718 4.68264 4.77004 4.88181 4.97846 5.06265 5.09490 5.18462 5.27826 5.30808 5.35315 5.39930 5.51264 5.53007 5.56127 5.68758 5.72289 5.78776 5.82080 6.03683 6.09607 6.38465 6.46729 6.49870 6.64063 6.72023 6.82277 7.03755 7.23527 7.36894 7.75610 8.01797 8.50001 8.66870 8.97282 9.55910 11.06775 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034749 B = 0.002904 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.591959 B = 9639.992329 C =10053.694172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.524 5.524 3 C 0.045 3.955 4 C -0.106 4.106 5 H 0.100 0.900 6 C -0.124 4.124 7 C 0.100 3.900 8 N -0.635 5.635 9 C 0.718 3.282 10 O -0.586 6.586 11 N -0.739 5.739 12 C 0.133 3.867 13 C -0.112 4.112 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.161 3.839 24 H 0.096 0.904 25 C 0.031 3.969 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.014 0.986 41 H 0.019 0.981 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 11.696 24.568 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.248 5.248 3 C -0.083 4.083 4 C -0.126 4.126 5 H 0.118 0.882 6 C -0.162 4.162 7 C -0.024 4.024 8 N -0.374 5.374 9 C 0.420 3.580 10 O -0.464 6.464 11 N -0.394 5.394 12 C 0.009 3.991 13 C -0.150 4.150 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.188 1.188 23 C 0.056 3.944 24 H 0.114 0.886 25 C -0.097 4.097 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.481 10.414 25.056 28.146 hybrid contribution -0.336 0.000 -1.005 1.060 sum -7.818 10.414 24.051 27.350 Atomic orbital electron populations 1.22498 0.87464 1.02384 1.00732 1.64547 1.08379 1.14643 1.37218 1.22852 0.94354 0.90449 1.00660 1.22611 0.98885 0.94377 0.96695 0.88205 1.22521 1.01529 0.98441 0.93726 1.21975 1.00603 0.80987 0.98820 1.47435 1.75348 1.05220 1.09444 1.15511 0.78214 0.83496 0.80771 1.90924 1.58600 1.20081 1.76792 1.45363 1.75245 1.10949 1.07814 1.21533 1.01376 0.87436 0.88721 1.21704 1.01059 1.00485 0.91789 1.19501 0.96637 0.93786 0.94951 1.21096 1.47759 0.95341 0.91778 0.91035 1.25029 0.94485 0.98987 0.94992 1.69915 1.48444 1.35016 1.00872 0.86772 0.78262 0.85637 0.78620 1.20247 1.21377 1.18834 1.22098 0.95826 0.95912 0.80610 0.88614 1.23576 0.94443 1.00959 0.90740 0.91067 0.91210 0.95410 0.89924 0.93332 0.89516 0.90709 0.91411 0.90910 0.77178 0.91969 0.91883 0.92136 0.92233 0.96720 0.96237 0.92702 0.93362 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.42 60.06 0.57 0.71 16 2 N -0.52 -4.89 5.55 -239.29 -1.33 -6.22 16 3 C 0.04 0.32 6.29 -3.05 -0.02 0.30 16 4 C -0.11 -0.76 3.87 -88.89 -0.34 -1.10 16 5 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 6 C -0.12 -0.75 6.48 -25.73 -0.17 -0.92 16 7 C 0.10 0.80 6.43 -3.37 -0.02 0.78 16 8 N -0.64 -7.41 2.92 -168.50 -0.49 -7.91 16 9 C 0.72 11.14 8.26 -86.92 -0.72 10.42 16 10 O -0.59 -11.35 16.32 5.29 0.09 -11.26 16 11 N -0.74 -10.75 5.51 -65.22 -0.36 -11.11 16 12 C 0.13 2.26 5.67 -4.04 -0.02 2.24 16 13 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 14 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 15 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 19 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 23 C 0.16 1.70 3.89 -65.78 -0.26 1.44 16 24 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 25 C 0.03 0.35 5.60 -2.00 -0.01 0.34 16 26 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.21 7.98 -51.93 -0.41 -0.20 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.32 6.78 -51.93 -0.35 -0.03 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.47 7.34 -51.93 -0.38 0.09 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 35 H 0.39 4.73 7.01 -40.82 -0.29 4.44 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.05 0.59 7.88 -51.93 -0.41 0.18 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -33.38 346.06 -10.11 -43.49 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.66 Total: -0.69 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.68 Total: -1.64 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.41 Total: -52.28 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.38 -10.11 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892790537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.935 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds