Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.49431 * 110.99706 * 2 1 4 4 C 1.51148 * 105.21596 * 245.40689 * 3 2 1 5 5 H 1.09000 * 111.28942 * 84.97168 * 4 3 2 6 6 C 1.52053 * 122.57453 * 220.35028 * 4 3 2 7 7 C 1.56297 * 100.75239 * 149.85608 * 6 4 3 8 8 N 1.49386 * 106.41911 * 336.36769 * 7 6 4 9 9 C 1.34769 * 127.15740 * 171.05800 * 8 7 6 10 10 O 1.21592 * 120.00233 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00056 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00021 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47333 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47535 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.46997 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.42339 * 105.68766 * 351.31974 * 8 7 6 24 24 H 1.09006 * 108.00397 * 284.36032 * 23 8 7 25 25 C 1.49924 * 129.86179 * 152.06976 * 23 8 7 26 26 H 1.08999 * 109.47142 * 60.00425 * 1 2 3 27 27 H 1.09001 * 109.46568 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47321 * 299.99745 * 1 2 3 29 29 H 1.09004 * 110.29165 * 126.47419 * 3 2 1 30 30 H 1.09003 * 110.29617 * 4.34479 * 3 2 1 31 31 H 1.09005 * 111.15926 * 31.98951 * 6 4 3 32 32 H 1.08994 * 111.16093 * 267.73085 * 6 4 3 33 33 H 1.09000 * 110.07213 * 217.12532 * 7 6 4 34 34 H 1.09007 * 110.06164 * 95.60438 * 7 6 4 35 35 H 0.96994 * 119.99487 * 0.02562 * 11 9 8 36 36 H 1.09005 * 109.46979 * 60.00120 * 12 11 9 37 37 H 1.09004 * 109.47608 * 300.00243 * 12 11 9 38 38 H 1.09005 * 109.46889 * 60.00189 * 13 12 11 39 39 H 1.09002 * 109.47401 * 300.00278 * 13 12 11 40 40 H 1.09005 * 109.46767 * 60.00250 * 14 13 12 41 41 H 1.09002 * 109.47113 * 300.00590 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.08991 * 111.03202 * 80.73699 * 25 23 8 44 44 H 1.08996 * 110.63562 * 317.14924 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3951 0.0000 4 6 2.7133 1.5480 -1.3262 5 1 2.0184 1.8339 -2.1157 6 6 4.0396 2.2784 -1.4662 7 6 4.6700 1.5095 -2.6721 8 7 4.0186 0.1655 -2.7030 9 6 4.1272 -0.7697 -3.6673 10 8 3.5354 -1.8263 -3.5590 11 7 4.8917 -0.5337 -4.7519 12 6 5.0102 -1.5505 -5.7999 13 6 5.9284 -1.0347 -6.9096 14 6 6.0526 -2.0968 -8.0038 15 6 6.9566 -1.5884 -9.0971 16 1 7.3987 -0.6061 -9.0192 17 6 7.2193 -2.3773 -10.1970 18 7 8.0086 -1.9338 -11.1510 19 14 6.4541 -4.0760 -10.3322 20 1 7.3571 -5.0767 -9.7091 21 1 5.1449 -4.0864 -9.6313 22 1 6.2519 -4.4152 -11.7637 23 6 3.2545 0.0805 -1.5051 24 1 3.9424 -0.0981 -0.6786 25 6 2.0068 -0.6983 -1.2145 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.7074 1.5302 0.8221 30 1 1.1883 2.1134 0.0775 31 1 4.6468 2.1670 -0.5678 32 1 3.8859 3.3302 -1.7071 33 1 5.7447 1.4010 -2.5258 34 1 4.4706 2.0433 -3.6013 35 1 5.3641 0.3090 -4.8382 36 1 4.0242 -1.7623 -6.2137 37 1 5.4296 -2.4627 -5.3755 38 1 6.9144 -0.8226 -6.4961 39 1 5.5086 -0.1227 -7.3340 40 1 5.0668 -2.3093 -8.4175 41 1 6.4727 -3.0086 -7.5791 42 1 8.1937 -2.4889 -11.9245 43 1 2.2387 -1.7397 -0.9919 44 1 1.3059 -0.6251 -2.0460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892790539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = -4.188563 kcal Electronic energy + Delta-G solvation = -22143.443238 eV Core-core repulsion = 18903.313061 eV Total energy + Delta-G solvation = -3240.130177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29377 -39.10878 -36.43446 -35.46129 -33.32128 -32.25588 -31.31466 -30.36376 -28.26371 -26.97673 -25.53719 -23.65818 -22.44937 -21.70439 -20.77259 -20.58562 -19.37418 -17.60828 -17.31723 -16.69297 -15.98595 -15.56706 -15.37352 -14.90428 -14.59657 -14.29710 -14.13197 -13.88692 -13.69433 -13.48545 -13.11908 -12.78829 -12.67615 -12.33565 -12.05832 -11.95824 -11.88816 -11.78004 -11.39451 -11.18088 -11.06451 -10.89151 -10.72196 -10.27414 -10.01001 -9.82441 -9.68237 -9.23048 -9.00323 -8.77324 -8.55936 -8.53741 -6.06585 -4.05236 2.45746 3.22561 3.31675 3.39132 3.43800 3.51864 3.60675 3.99012 4.37898 4.42503 4.44557 4.61233 4.77218 4.88254 4.96280 5.05947 5.08882 5.16953 5.27387 5.27654 5.35794 5.41101 5.51995 5.53947 5.57731 5.64931 5.69112 5.80592 5.86977 6.01892 6.03348 6.37103 6.41660 6.46281 6.58273 6.73145 6.81649 7.11762 7.23294 7.36584 7.75395 7.98402 8.49861 8.66421 8.97152 9.55761 11.06641 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036097 B = 0.002864 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.507551 B = 9775.583644 C =10376.059565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.528 5.528 3 C 0.053 3.947 4 C -0.150 4.150 5 H 0.085 0.915 6 C -0.109 4.109 7 C 0.103 3.897 8 N -0.623 5.623 9 C 0.719 3.281 10 O -0.586 6.586 11 N -0.738 5.738 12 C 0.133 3.867 13 C -0.112 4.112 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.264 1.264 22 H -0.288 1.288 23 C 0.138 3.862 24 H 0.067 0.933 25 C 0.059 3.941 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.395 0.605 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.094 0.906 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 10.327 23.803 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.253 5.253 3 C -0.074 4.074 4 C -0.171 4.171 5 H 0.103 0.897 6 C -0.147 4.147 7 C -0.019 4.019 8 N -0.362 5.362 9 C 0.421 3.579 10 O -0.463 6.463 11 N -0.392 5.392 12 C 0.009 3.991 13 C -0.150 4.150 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.189 1.189 22 H -0.214 1.214 23 C 0.030 3.970 24 H 0.085 0.915 25 C -0.069 4.069 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.985 9.107 24.067 28.387 hybrid contribution -0.338 -0.009 -1.108 1.158 sum -12.323 9.098 22.959 27.600 Atomic orbital electron populations 1.22546 0.87428 1.02457 1.00595 1.65091 1.08429 1.13485 1.38285 1.22315 0.99117 0.89752 0.96253 1.23029 0.97341 0.97462 0.99244 0.89700 1.22204 0.95138 0.99203 0.98174 1.22911 0.97564 0.82072 0.99383 1.46595 1.51186 1.17105 1.21271 1.15554 0.80343 0.82742 0.79288 1.90926 1.51419 1.24850 1.79147 1.45321 1.51566 1.21373 1.20950 1.21538 1.00606 0.90138 0.86787 1.21705 0.97852 1.00553 0.94930 1.19501 0.97353 0.94251 0.93773 1.21094 1.28230 1.03872 1.02775 0.91029 1.25031 0.94684 0.98261 0.95521 1.69914 1.36962 1.37673 1.09677 0.86773 0.80588 0.84754 0.77176 1.20220 1.18864 1.21383 1.20734 0.94326 0.95088 0.86837 0.91523 1.22213 0.94501 0.98970 0.91186 0.95408 0.91048 0.91125 0.89711 0.91610 0.89888 0.89763 0.90655 0.90756 0.77178 0.91958 0.91882 0.92153 0.92175 0.96284 0.96680 0.92701 0.88743 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.22 60.07 0.55 0.69 16 2 N -0.53 -4.87 5.57 -240.91 -1.34 -6.21 16 3 C 0.05 0.38 6.61 -3.34 -0.02 0.36 16 4 C -0.15 -1.17 3.31 -89.62 -0.30 -1.46 16 5 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.11 -0.64 6.68 -25.44 -0.17 -0.81 16 7 C 0.10 0.81 6.47 -0.67 0.00 0.80 16 8 N -0.62 -7.43 3.21 -169.30 -0.54 -7.97 16 9 C 0.72 11.28 8.53 -86.92 -0.74 10.54 16 10 O -0.59 -11.42 16.17 5.29 0.09 -11.33 16 11 N -0.74 -10.77 5.53 -65.23 -0.36 -11.13 16 12 C 0.13 2.27 5.67 -4.05 -0.02 2.24 16 13 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 14 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 15 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 19 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 C 0.14 1.49 2.90 -69.23 -0.20 1.29 16 24 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 25 C 0.06 0.66 5.93 -3.58 -0.02 0.64 16 26 H 0.03 0.21 8.11 -51.93 -0.42 -0.21 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.40 7.64 -51.93 -0.40 0.00 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 35 H 0.39 4.72 7.50 -40.82 -0.31 4.41 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.06 0.69 7.85 -51.93 -0.41 0.28 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -33.49 348.24 -10.20 -43.70 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.79 Total: -0.90 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.61 Total: -1.54 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -1.47 Total: -52.34 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.49 -10.20 -43.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892790539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.508 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds