Wall clock time and date at job start Tue Mar 31 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 119.99777 * 2 1 4 4 C 1.52998 * 109.46875 * 248.84542 * 3 2 1 5 5 C 1.52998 * 109.47354 * 128.84824 * 3 2 1 6 6 N 1.46501 * 109.47285 * 8.84414 * 3 2 1 7 7 C 1.34777 * 119.99847 * 182.44420 * 6 3 2 8 8 O 1.21586 * 120.00164 * 359.97438 * 7 6 3 9 9 N 1.34781 * 119.99653 * 180.02562 * 7 6 3 10 10 C 1.46503 * 119.99473 * 179.97438 * 9 7 6 11 11 C 1.53076 * 109.44256 * 84.80006 * 10 9 7 12 12 C 1.53187 * 109.29356 * 181.23351 * 11 10 9 13 13 N 1.46931 * 108.89284 * 305.57202 * 12 11 10 14 14 C 1.36938 * 120.62834 * 233.51821 * 13 12 11 15 15 H 1.07995 * 119.99492 * 148.00374 * 14 13 12 16 16 C 1.38809 * 120.00104 * 327.99879 * 14 13 12 17 17 N 1.31617 * 120.00325 * 341.39534 * 16 14 13 18 18 Si 1.86805 * 119.99720 * 161.39547 * 16 14 13 19 19 H 1.48494 * 109.47300 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46813 * 120.00065 * 18 16 14 21 21 H 1.48503 * 109.46881 * 240.00082 * 18 16 14 22 22 C 1.46919 * 118.73593 * 53.54350 * 13 12 11 23 23 C 1.53045 * 109.45413 * 205.00040 * 10 9 7 24 24 H 1.07992 * 120.00208 * 6.36781 * 1 2 3 25 25 H 1.08006 * 119.99809 * 186.35637 * 1 2 3 26 26 H 1.08004 * 119.99862 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47194 * 180.02562 * 4 3 2 28 28 H 1.08998 * 109.47679 * 300.00156 * 4 3 2 29 29 H 1.08999 * 109.47316 * 60.00149 * 4 3 2 30 30 H 1.09003 * 109.46976 * 299.99720 * 5 3 2 31 31 H 1.09003 * 109.47228 * 59.99474 * 5 3 2 32 32 H 1.08999 * 109.47334 * 180.02562 * 5 3 2 33 33 H 0.96993 * 120.00091 * 2.44736 * 6 3 2 34 34 H 0.96993 * 120.00285 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.46195 * 324.97133 * 10 9 7 36 36 H 1.08996 * 109.38931 * 61.35128 * 11 10 9 37 37 H 1.09006 * 109.61645 * 301.24902 * 11 10 9 38 38 H 1.09007 * 109.58300 * 185.71943 * 12 11 10 39 39 H 1.08997 * 109.58814 * 65.43432 * 12 11 10 40 40 H 0.96998 * 120.00209 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.58877 * 66.17684 * 22 13 12 42 42 H 1.08999 * 109.58466 * 186.45775 * 22 13 12 43 43 H 1.08996 * 109.50197 * 58.68027 * 23 10 9 44 44 H 1.08996 * 109.52635 * 298.59463 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.7692 1.4864 -1.3453 5 6 3.1021 1.2944 1.1234 6 7 1.1257 2.4104 0.2124 7 6 1.5700 3.6827 0.2011 8 8 2.7493 3.9132 0.0151 9 7 0.7073 4.6996 0.3970 10 6 1.1905 6.0826 0.3853 11 6 1.2424 6.5920 -1.0573 12 6 1.7771 8.0274 -1.0683 13 7 0.9578 8.8472 -0.1651 14 6 0.3802 10.0074 -0.6072 15 1 -0.5671 10.3283 -0.1999 16 6 1.0124 10.7711 -1.5789 17 7 2.2967 10.6052 -1.8139 18 14 0.0401 12.0344 -2.5528 19 1 -1.3742 12.0267 -2.1003 20 1 0.6221 13.3829 -2.3339 21 1 0.0998 11.6980 -3.9980 22 6 0.7706 8.3987 1.2213 23 6 0.2439 6.9602 1.2074 24 1 -0.5400 0.9295 -0.1037 25 1 -0.5400 -0.9296 0.1036 26 1 1.8500 -0.9354 0.0004 27 1 3.3146 2.4302 -1.3452 28 1 3.4670 0.6641 -1.5034 29 1 2.0294 1.4940 -2.1457 30 1 2.5992 1.1652 2.0819 31 1 3.7998 0.4720 0.9654 32 1 3.6467 2.2386 1.1237 33 1 0.1850 2.2265 0.3611 34 1 -0.2332 4.5156 0.5464 35 1 2.1900 6.1217 0.8183 36 1 0.2395 6.5739 -1.4837 37 1 1.9006 5.9540 -1.6473 38 1 1.7210 8.4305 -2.0795 39 1 2.8130 8.0341 -0.7292 40 1 2.7383 11.1386 -2.4931 41 1 1.7240 8.4336 1.7486 42 1 0.0524 9.0483 1.7216 43 1 0.1917 6.5820 2.2283 44 1 -0.7503 6.9412 0.7611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892879308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:01 Heat of formation + Delta-G solvation = 14.639676 kcal Electronic energy + Delta-G solvation = -22866.628926 eV Core-core repulsion = 19627.315202 eV Total energy + Delta-G solvation = -3239.313724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35015 -38.06059 -36.65695 -34.30136 -32.62080 -31.81773 -30.99320 -29.92682 -29.11027 -27.25792 -24.96099 -22.91114 -22.21008 -21.98604 -20.77897 -19.54107 -18.96622 -18.34531 -16.76932 -15.95660 -15.17716 -15.10649 -14.93229 -14.68069 -14.04692 -13.73940 -13.62606 -13.50195 -13.41747 -12.94693 -12.65082 -12.49059 -12.35602 -11.99488 -11.87010 -11.42548 -11.37246 -11.14840 -11.04522 -10.86299 -10.73012 -10.33854 -10.19245 -10.04142 -9.84312 -9.76009 -9.70008 -9.45856 -9.02920 -8.55549 -8.37281 -6.60918 -5.77257 -3.22581 1.89564 2.83427 3.38378 3.45406 3.46359 3.48574 4.30879 4.47829 4.51389 4.76228 4.99195 5.11687 5.33674 5.41789 5.44378 5.49581 5.62770 5.66472 5.69302 5.77787 5.88571 5.89341 6.08161 6.13396 6.20989 6.27970 6.33017 6.35338 6.41704 6.51184 6.63425 6.69277 6.70384 6.81905 6.96514 7.01473 7.17076 7.38026 7.65662 7.83687 8.22521 8.49247 8.85663 9.23165 9.86084 10.45869 11.31106 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034178 B = 0.003470 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.043788 B = 8068.053036 C = 8194.558129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.217 3.783 4 C -0.161 4.161 5 C -0.158 4.158 6 N -0.748 5.748 7 C 0.704 3.296 8 O -0.584 6.584 9 N -0.741 5.741 10 C 0.170 3.830 11 C -0.146 4.146 12 C 0.177 3.823 13 N -0.591 5.591 14 C -0.259 4.259 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.896 5.896 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.149 3.851 23 C -0.138 4.138 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.391 0.609 34 H 0.388 0.612 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.022 0.978 40 H 0.254 0.746 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -20.692 4.817 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C 0.131 3.869 4 C -0.219 4.219 5 C -0.216 4.216 6 N -0.408 5.408 7 C 0.404 3.596 8 O -0.461 6.461 9 N -0.395 5.395 10 C 0.066 3.934 11 C -0.186 4.186 12 C 0.051 3.949 13 N -0.314 5.314 14 C -0.389 4.389 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.539 5.539 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.022 3.978 23 C -0.178 4.178 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.141 0.859 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.221 0.779 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.821 -20.348 4.535 21.038 hybrid contribution -1.434 0.349 -0.480 1.552 sum -4.255 -19.999 4.054 20.845 Atomic orbital electron populations 1.23764 0.96054 1.02046 1.01488 1.23122 0.96172 0.97719 0.99471 1.19045 0.88564 0.83119 0.96186 1.22232 1.00670 1.04214 0.94818 1.22180 0.98482 1.03875 0.97029 1.45589 1.11458 1.04510 1.79282 1.15980 0.85495 0.80262 0.77835 1.90856 1.15170 1.83602 1.56521 1.45559 1.10333 1.06292 1.77275 1.20878 0.98317 0.77099 0.97098 1.22564 1.01024 0.99990 0.95054 1.20653 0.92330 0.85600 0.96343 1.44062 1.59297 1.23308 1.04737 1.19145 1.00471 0.98707 1.20565 0.91861 1.25140 0.94835 0.97490 1.01746 1.70074 1.07735 1.42184 1.33889 0.86291 0.79694 0.81067 0.80088 1.20199 1.21699 1.21536 1.20842 0.97676 0.91141 0.88171 1.22337 0.99135 0.98218 0.98142 0.88425 0.87888 0.85944 0.89206 0.92134 0.92898 0.92884 0.92010 0.89837 0.77123 0.77913 0.90074 0.92889 0.92769 0.90408 0.95964 0.93646 0.96217 0.92374 0.92708 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.38 13.86 29.01 0.40 -0.98 16 2 C -0.15 -1.17 8.77 -36.03 -0.32 -1.49 16 3 C 0.22 2.31 1.01 -132.98 -0.13 2.17 16 4 C -0.16 -1.88 8.34 37.16 0.31 -1.57 16 5 C -0.16 -1.72 8.42 37.16 0.31 -1.41 16 6 N -0.75 -8.50 4.95 -53.51 -0.26 -8.76 16 7 C 0.70 10.63 7.95 -86.91 -0.69 9.94 16 8 O -0.58 -10.96 12.21 5.29 0.06 -10.89 16 9 N -0.74 -10.58 5.08 -58.61 -0.30 -10.88 16 10 C 0.17 3.00 2.41 -67.87 -0.16 2.83 16 11 C -0.15 -2.95 5.66 -26.60 -0.15 -3.10 16 12 C 0.18 4.35 5.29 -3.71 -0.02 4.33 16 13 N -0.59 -14.90 2.97 -172.32 -0.51 -15.41 16 14 C -0.26 -7.14 9.52 -15.06 -0.14 -7.28 16 15 H 0.06 1.71 7.90 -52.49 -0.41 1.29 16 16 C 0.01 0.21 4.84 -17.43 -0.08 0.13 16 17 N -0.90 -26.44 11.61 55.49 0.64 -25.79 16 18 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 23 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 24 H 0.10 0.66 5.69 -52.49 -0.30 0.36 16 25 H 0.10 0.57 8.06 -52.48 -0.42 0.15 16 26 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.09 1.34 5.99 -51.92 -0.31 1.03 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.17 6.34 -51.93 -0.33 0.84 16 33 H 0.39 3.48 5.84 -40.82 -0.24 3.24 16 34 H 0.39 4.39 8.62 -40.82 -0.35 4.04 16 35 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 2.12 6.43 -51.92 -0.33 1.79 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -31.67 344.03 -8.35 -40.02 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.29 Total: 5.64 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.85 Total: 4.20 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.43 Total: -60.85 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.06 Total: -10.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.67 -8.35 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.665 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds