Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00062 * 2 1 4 4 C 1.53003 * 109.47646 * 184.72984 * 3 2 1 5 5 N 1.46904 * 109.46667 * 69.36404 * 4 3 2 6 6 C 1.46901 * 111.00368 * 286.23425 * 5 4 3 7 7 C 1.50706 * 109.46659 * 302.79435 * 6 5 4 8 8 H 1.07999 * 119.99990 * 4.36843 * 7 6 5 9 9 C 1.37879 * 119.99714 * 184.36981 * 7 6 5 10 10 N 1.31515 * 120.00028 * 354.85761 * 9 7 6 11 11 Si 1.86799 * 120.00004 * 174.85782 * 9 7 6 12 12 H 1.48500 * 109.47111 * 4.99606 * 11 9 7 13 13 H 1.48498 * 109.47253 * 125.00426 * 11 9 7 14 14 H 1.48508 * 109.46864 * 245.00163 * 11 9 7 15 15 C 1.46901 * 110.99768 * 162.27648 * 5 4 3 16 16 C 1.50697 * 109.47279 * 190.00148 * 15 5 4 17 17 N 1.30510 * 125.64797 * 275.00165 * 16 15 5 18 18 C 1.34119 * 109.25220 * 179.97438 * 17 16 15 19 19 C 1.34667 * 108.02542 * 0.02562 * 18 17 16 20 20 C 1.50702 * 126.59485 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47168 * 325.04290 * 20 19 18 22 22 C 1.53005 * 109.47025 * 85.04176 * 20 19 18 23 23 N 1.35034 * 125.65245 * 95.00210 * 16 15 5 24 24 H 0.97008 * 126.39611 * 0.26687 * 23 16 15 25 25 H 1.08998 * 109.47606 * 64.93785 * 1 2 3 26 26 H 1.09000 * 109.47243 * 184.94443 * 1 2 3 27 27 H 1.09008 * 109.47155 * 304.94065 * 1 2 3 28 28 H 1.09003 * 109.47133 * 64.73156 * 3 2 1 29 29 H 1.09002 * 109.47264 * 304.73539 * 3 2 1 30 30 H 1.08998 * 109.46758 * 309.36912 * 4 3 2 31 31 H 1.08991 * 109.47384 * 189.36429 * 4 3 2 32 32 H 1.09001 * 109.47060 * 62.78878 * 6 5 4 33 33 H 1.08999 * 109.47208 * 182.79696 * 6 5 4 34 34 H 0.96999 * 120.00527 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.46710 * 70.00442 * 15 5 4 36 36 H 1.09004 * 109.47276 * 310.00576 * 15 5 4 37 37 H 1.08000 * 125.98923 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47174 * 205.04382 * 20 19 18 39 39 H 1.09000 * 109.46998 * 59.99985 * 21 20 19 40 40 H 1.08994 * 109.47344 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47055 * 300.00249 * 21 20 19 42 42 H 1.08999 * 109.46852 * 180.02562 * 22 20 19 43 43 H 1.08998 * 109.46802 * 300.00013 * 22 20 19 44 44 H 1.08993 * 109.46909 * 59.99968 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5309 1.1868 -0.1189 5 7 3.8809 0.7059 -1.4622 6 6 3.5709 -0.7227 -1.6074 7 6 4.3025 -1.5056 -0.5476 8 1 4.8778 -0.9879 0.2056 9 6 4.2373 -2.8828 -0.5397 10 7 3.4570 -3.5091 -1.3932 11 14 5.2574 -3.8592 0.6832 12 1 5.9519 -2.9253 1.6056 13 1 4.3686 -4.7567 1.4641 14 1 6.2627 -4.6717 -0.0480 15 6 5.2936 0.9715 -1.7649 16 6 5.5558 0.6940 -3.2227 17 7 5.8380 -0.4721 -3.7363 18 6 6.0078 -0.3428 -5.0604 19 6 5.8244 0.9526 -5.3795 20 6 5.9172 1.5609 -6.7552 21 6 7.0088 0.8476 -7.5556 22 6 4.5749 1.4060 -7.4730 23 7 5.5376 1.6108 -4.2141 24 1 5.3587 2.5593 -4.1177 25 1 -0.3634 0.4353 -0.9309 26 1 -0.3634 -1.0238 0.0886 27 1 -0.3634 0.5886 0.8425 28 1 1.7572 1.8158 0.9294 29 1 1.6230 1.8756 -0.8445 30 1 3.8997 0.4824 0.6267 31 1 3.9857 2.1632 0.0473 32 1 2.4974 -0.8748 -1.4952 33 1 3.8853 -1.0644 -2.5935 34 1 3.4108 -4.4780 -1.3875 35 1 5.9238 0.3259 -1.1532 36 1 5.5221 2.0147 -1.5467 37 1 6.2500 -1.1380 -5.7499 38 1 6.1631 2.6193 -6.6687 39 1 6.7630 -0.2108 -7.6421 40 1 7.0763 1.2878 -8.5504 41 1 7.9651 0.9578 -7.0443 42 1 4.6422 1.8456 -8.4681 43 1 4.3291 0.3476 -7.5595 44 1 3.7973 1.9142 -6.9028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894003749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = 15.235895 kcal Electronic energy + Delta-G solvation = -22999.611135 eV Core-core repulsion = 19760.323266 eV Total energy + Delta-G solvation = -3239.287870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57349 -37.71254 -36.06779 -35.23014 -32.19558 -31.85514 -30.15701 -28.22559 -27.19835 -26.58823 -25.60878 -24.21209 -22.68743 -22.19068 -20.45537 -19.81791 -19.08539 -17.01217 -16.30642 -15.86931 -15.52291 -14.92107 -14.55322 -14.38211 -14.17503 -14.08422 -13.63265 -13.49396 -13.24646 -12.95677 -12.74263 -12.16286 -12.07777 -11.94198 -11.46630 -11.23327 -11.19133 -11.01072 -10.96062 -10.92330 -10.71520 -10.58314 -10.49430 -9.92806 -9.68389 -9.40594 -9.26862 -9.08156 -8.85537 -8.01858 -7.71088 -7.06957 -5.70079 -3.71299 2.52890 3.46495 3.53486 3.53995 3.55059 3.79823 4.53299 4.67922 4.81795 4.89675 5.03986 5.15507 5.38520 5.49693 5.59828 5.60524 5.63558 5.65960 5.77924 5.82039 5.83805 5.89823 5.91877 5.95235 5.97203 6.06917 6.12379 6.19257 6.24012 6.29127 6.30451 6.60302 6.77388 6.81297 7.32681 7.49008 7.89015 7.92472 7.94462 8.21187 8.32661 8.51210 8.61158 8.84847 9.33203 9.89555 11.37873 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.005551 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.673524 B = 5042.807566 C = 6138.162933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.074 3.926 4 C 0.054 3.946 5 N -0.539 5.539 6 C 0.178 3.822 7 C -0.522 4.522 8 H 0.048 0.952 9 C 0.070 3.930 10 N -0.888 5.888 11 Si 0.879 3.121 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.286 1.286 15 C 0.138 3.862 16 C 0.240 3.760 17 N -0.456 5.456 18 C -0.020 4.020 19 C -0.042 4.042 20 C -0.012 4.012 21 C -0.140 4.140 22 C -0.143 4.143 23 N -0.564 5.564 24 H 0.410 0.590 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.158 0.842 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 13.934 -7.127 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C -0.004 4.004 4 C -0.074 4.074 5 N -0.264 5.264 6 C 0.054 3.946 7 C -0.561 4.561 8 H 0.067 0.933 9 C -0.131 4.131 10 N -0.528 5.528 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.008 3.992 16 C -0.024 4.024 17 N -0.175 5.175 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.032 4.032 21 C -0.198 4.198 22 C -0.201 4.201 23 N -0.167 5.167 24 H 0.246 0.754 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.176 0.824 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.063 13.045 -7.079 14.880 hybrid contribution 0.597 0.251 0.849 1.068 sum 1.660 13.296 -6.230 14.777 Atomic orbital electron populations 1.22628 0.83352 1.02044 0.98470 1.88350 1.17479 1.26369 1.94720 1.22429 0.94493 0.85388 0.98071 1.22017 0.93498 0.98965 0.92918 1.62714 1.15268 1.23655 1.24756 1.20091 0.98090 0.78922 0.97542 1.21482 1.30081 0.91749 1.12795 0.93349 1.24771 0.95176 0.97718 0.95431 1.69963 1.37971 1.07933 1.36918 0.86761 0.80494 0.80412 0.81503 1.20260 1.21571 1.21222 1.20245 0.93218 0.99229 0.86479 1.23159 1.02741 0.84128 0.92365 1.70523 1.17051 1.22252 1.07626 1.22042 1.07554 0.94128 0.93164 1.20995 1.12521 0.94215 0.87957 1.19422 0.96309 0.98689 0.88781 1.21786 0.97939 1.01083 0.98977 1.21851 0.96105 1.02737 0.99365 1.43142 1.55248 1.11106 1.07206 0.75402 0.95010 0.90177 0.95444 0.94564 0.93867 0.91698 0.92087 0.92897 0.93619 0.93533 0.90763 0.91950 0.82415 0.91364 0.91885 0.92445 0.92436 0.92548 0.91943 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.44 7.95 -35.23 -0.28 -7.72 16 3 C 0.07 1.30 6.20 37.16 0.23 1.53 16 4 C 0.05 1.03 5.32 -3.82 -0.02 1.01 16 5 N -0.54 -11.47 4.65 -237.51 -1.10 -12.57 16 6 C 0.18 4.76 4.57 -4.97 -0.02 4.74 16 7 C -0.52 -14.87 7.35 -34.44 -0.25 -15.12 16 8 H 0.05 1.36 5.95 -52.49 -0.31 1.05 16 9 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 10 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 11 Si 0.88 22.84 29.54 -169.99 -5.02 17.82 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 15 C 0.14 2.67 5.44 -4.98 -0.03 2.64 16 16 C 0.24 4.73 6.93 -155.42 -1.08 3.66 16 17 N -0.46 -10.31 10.03 -10.82 -0.11 -10.42 16 18 C -0.02 -0.36 11.06 -17.82 -0.20 -0.56 16 19 C -0.04 -0.63 6.16 -81.60 -0.50 -1.14 16 20 C -0.01 -0.13 3.38 -91.77 -0.31 -0.44 16 21 C -0.14 -1.37 8.79 37.16 0.33 -1.05 16 22 C -0.14 -1.52 9.18 37.16 0.34 -1.18 16 23 N -0.56 -8.77 6.15 -6.54 -0.04 -8.81 16 24 H 0.41 4.94 8.96 -40.82 -0.37 4.57 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.40 5.86 -51.93 -0.30 1.10 16 31 H 0.06 0.93 7.77 -51.93 -0.40 0.52 16 32 H 0.05 1.55 5.71 -51.93 -0.30 1.25 16 33 H 0.05 1.37 6.18 -51.93 -0.32 1.05 16 34 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.07 1.62 6.85 -51.93 -0.36 1.27 16 36 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 37 H 0.16 2.65 7.40 -52.49 -0.39 2.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.64 7.32 -51.93 -0.38 0.26 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -34.67 351.49 -8.34 -43.01 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.32 Total: 2.69 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.50 Total: -2.28 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.52 Total: -58.81 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.28 Total: -7.72 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.67 -8.34 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894003749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.245 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds