Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00062 * 2 1 4 4 C 1.53003 * 109.47646 * 184.72984 * 3 2 1 5 5 N 1.46904 * 109.46667 * 69.36404 * 4 3 2 6 6 C 1.46901 * 111.00368 * 286.23425 * 5 4 3 7 7 C 1.50706 * 109.46659 * 302.79435 * 6 5 4 8 8 H 1.07999 * 119.99990 * 4.36843 * 7 6 5 9 9 C 1.37879 * 119.99714 * 184.36981 * 7 6 5 10 10 N 1.31515 * 120.00028 * 354.85761 * 9 7 6 11 11 Si 1.86799 * 120.00004 * 174.85782 * 9 7 6 12 12 H 1.48500 * 109.47111 * 4.99606 * 11 9 7 13 13 H 1.48498 * 109.47253 * 125.00426 * 11 9 7 14 14 H 1.48508 * 109.46864 * 245.00163 * 11 9 7 15 15 C 1.46901 * 110.99768 * 162.27648 * 5 4 3 16 16 C 1.50697 * 109.47279 * 190.00148 * 15 5 4 17 17 N 1.30510 * 125.64797 * 275.00165 * 16 15 5 18 18 C 1.34119 * 109.25220 * 179.97438 * 17 16 15 19 19 C 1.34667 * 108.02542 * 0.02562 * 18 17 16 20 20 C 1.50702 * 126.59485 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47168 * 325.04290 * 20 19 18 22 22 C 1.53005 * 109.47025 * 85.04176 * 20 19 18 23 23 N 1.35034 * 125.65245 * 95.00210 * 16 15 5 24 24 H 0.97008 * 126.39611 * 0.26687 * 23 16 15 25 25 H 1.08998 * 109.47606 * 64.93785 * 1 2 3 26 26 H 1.09000 * 109.47243 * 184.94443 * 1 2 3 27 27 H 1.09008 * 109.47155 * 304.94065 * 1 2 3 28 28 H 1.09003 * 109.47133 * 64.73156 * 3 2 1 29 29 H 1.09002 * 109.47264 * 304.73539 * 3 2 1 30 30 H 1.08998 * 109.46758 * 309.36912 * 4 3 2 31 31 H 1.08991 * 109.47384 * 189.36429 * 4 3 2 32 32 H 1.09001 * 109.47060 * 62.78878 * 6 5 4 33 33 H 1.08999 * 109.47208 * 182.79696 * 6 5 4 34 34 H 0.96999 * 120.00527 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.46710 * 70.00442 * 15 5 4 36 36 H 1.09004 * 109.47276 * 310.00576 * 15 5 4 37 37 H 1.08000 * 125.98923 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47174 * 205.04382 * 20 19 18 39 39 H 1.09000 * 109.46998 * 59.99985 * 21 20 19 40 40 H 1.08994 * 109.47344 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.47055 * 300.00249 * 21 20 19 42 42 H 1.08999 * 109.46852 * 180.02562 * 22 20 19 43 43 H 1.08998 * 109.46802 * 300.00013 * 22 20 19 44 44 H 1.08993 * 109.46909 * 59.99968 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5309 1.1868 -0.1189 5 7 3.8809 0.7059 -1.4622 6 6 3.5709 -0.7227 -1.6074 7 6 4.3025 -1.5056 -0.5476 8 1 4.8778 -0.9879 0.2056 9 6 4.2373 -2.8828 -0.5397 10 7 3.4570 -3.5091 -1.3932 11 14 5.2574 -3.8592 0.6832 12 1 5.9519 -2.9253 1.6056 13 1 4.3686 -4.7567 1.4641 14 1 6.2627 -4.6717 -0.0480 15 6 5.2936 0.9715 -1.7649 16 6 5.5558 0.6940 -3.2227 17 7 5.8380 -0.4721 -3.7363 18 6 6.0078 -0.3428 -5.0604 19 6 5.8244 0.9526 -5.3795 20 6 5.9172 1.5609 -6.7552 21 6 7.0088 0.8476 -7.5556 22 6 4.5749 1.4060 -7.4730 23 7 5.5376 1.6108 -4.2141 24 1 5.3587 2.5593 -4.1177 25 1 -0.3634 0.4353 -0.9309 26 1 -0.3634 -1.0238 0.0886 27 1 -0.3634 0.5886 0.8425 28 1 1.7572 1.8158 0.9294 29 1 1.6230 1.8756 -0.8445 30 1 3.8997 0.4824 0.6267 31 1 3.9857 2.1632 0.0473 32 1 2.4974 -0.8748 -1.4952 33 1 3.8853 -1.0644 -2.5935 34 1 3.4108 -4.4780 -1.3875 35 1 5.9238 0.3259 -1.1532 36 1 5.5221 2.0147 -1.5467 37 1 6.2500 -1.1380 -5.7499 38 1 6.1631 2.6193 -6.6687 39 1 6.7630 -0.2108 -7.6421 40 1 7.0763 1.2878 -8.5504 41 1 7.9651 0.9578 -7.0443 42 1 4.6422 1.8456 -8.4681 43 1 4.3291 0.3476 -7.5595 44 1 3.7973 1.9142 -6.9028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894003749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = -10.029465 kcal Electronic energy + Delta-G solvation = -23000.706724 eV Core-core repulsion = 19760.323266 eV Total energy + Delta-G solvation = -3240.383458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.95104 -39.26822 -37.59845 -36.30122 -34.38158 -33.29613 -31.56536 -29.91798 -28.41978 -27.93349 -26.97348 -26.00393 -24.28671 -23.44719 -21.91716 -21.41959 -20.42772 -18.55008 -18.12031 -17.38303 -17.06389 -16.61643 -16.13513 -15.76232 -15.57337 -15.28852 -15.07297 -14.90108 -14.61580 -14.53228 -14.04279 -13.72953 -13.43106 -12.95005 -12.93876 -12.87992 -12.59300 -12.49253 -12.38353 -12.34988 -12.17456 -12.02689 -11.89468 -11.83177 -11.49274 -11.45491 -10.77857 -10.56606 -10.47449 -10.12887 -9.13760 -8.85092 -7.95089 -6.04130 1.19345 1.36909 1.39545 1.48320 2.25601 2.34874 2.49112 3.18895 3.34793 3.51098 3.79621 3.97901 4.03025 4.21051 4.28832 4.35366 4.51990 4.54636 4.57135 4.60498 4.61917 4.69795 4.76628 4.83585 4.85058 4.90480 4.92108 5.02914 5.04141 5.19746 5.23913 5.28466 5.41362 5.58380 5.58546 5.66634 5.94774 6.11321 6.22334 6.38762 6.54919 6.65053 6.75600 7.12987 7.44236 7.60342 9.10614 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014212 B = 0.005551 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.673524 B = 5042.807566 C = 6138.162933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.072 3.928 4 C 0.052 3.948 5 N -0.534 5.534 6 C 0.202 3.798 7 C -0.515 4.515 8 H 0.049 0.951 9 C 0.011 3.989 10 N -0.928 5.928 11 Si 0.942 3.058 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.288 1.288 15 C 0.141 3.859 16 C 0.218 3.782 17 N -0.517 5.517 18 C -0.062 4.062 19 C -0.007 4.007 20 C -0.010 4.010 21 C -0.139 4.139 22 C -0.141 4.141 23 N -0.547 5.547 24 H 0.429 0.571 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.108 0.892 32 H 0.025 0.975 33 H 0.008 0.992 34 H 0.254 0.746 35 H 0.042 0.958 36 H 0.112 0.888 37 H 0.161 0.839 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 16.994 -7.363 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C -0.005 4.005 4 C -0.076 4.076 5 N -0.258 5.258 6 C 0.075 3.925 7 C -0.554 4.554 8 H 0.067 0.933 9 C -0.187 4.187 10 N -0.570 5.570 11 Si 0.769 3.231 12 H -0.190 1.190 13 H -0.210 1.210 14 H -0.215 1.215 15 C 0.012 3.988 16 C -0.047 4.047 17 N -0.237 5.237 18 C -0.210 4.210 19 C -0.124 4.124 20 C -0.030 4.030 21 C -0.196 4.196 22 C -0.198 4.198 23 N -0.151 5.151 24 H 0.269 0.731 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.178 0.822 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.538 16.157 -7.296 17.795 hybrid contribution 0.440 -0.605 0.849 1.132 sum 1.978 15.552 -6.447 16.951 Atomic orbital electron populations 1.22732 0.81435 1.02228 1.00219 1.88270 1.19891 1.28763 1.95106 1.22583 0.93364 0.84430 1.00114 1.22204 0.94925 1.00227 0.90278 1.62588 1.16763 1.19916 1.26540 1.19538 0.95891 0.82111 0.94942 1.21771 1.29046 0.91993 1.12622 0.93295 1.25587 0.96492 0.99121 0.97452 1.70105 1.39883 1.07991 1.39024 0.85761 0.78892 0.79023 0.79430 1.19008 1.20968 1.21458 1.20297 0.91145 1.01297 0.86098 1.23041 1.04141 0.84421 0.93094 1.70375 1.18710 1.24699 1.09914 1.22264 1.10287 0.96166 0.92305 1.21593 1.08273 0.93098 0.89427 1.19645 0.97217 1.00017 0.86075 1.21787 0.97089 1.00608 1.00140 1.21834 0.95324 1.01826 1.00829 1.43005 1.54036 1.11706 1.06349 0.73052 0.94178 0.91174 0.92344 0.91239 0.92933 0.94868 0.87428 0.95703 0.97343 0.93737 0.93966 0.87004 0.82158 0.88609 0.92912 0.89706 0.92793 0.89555 0.93676 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.40 -17.03 7.95 -148.98 -1.18 -18.22 16 3 C 0.07 2.40 6.20 71.98 0.45 2.85 16 4 C 0.05 1.86 5.32 86.30 0.46 2.32 16 5 N -0.53 -22.60 4.65 -905.34 -4.21 -26.81 16 6 C 0.20 11.17 4.57 85.56 0.39 11.57 16 7 C -0.51 -30.26 7.35 25.60 0.19 -30.07 16 8 H 0.05 2.81 5.95 -2.91 -0.02 2.80 16 9 C 0.01 0.67 5.45 84.66 0.46 1.13 16 10 N -0.93 -60.46 13.29 21.45 0.29 -60.17 16 11 Si 0.94 48.22 29.54 68.60 2.03 50.24 16 12 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 13 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 14 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 15 C 0.14 5.38 5.44 85.56 0.47 5.84 16 16 C 0.22 8.61 6.93 138.13 0.96 9.56 16 17 N -0.52 -24.36 10.03 -188.14 -1.89 -26.25 16 18 C -0.06 -2.40 11.06 83.52 0.92 -1.48 16 19 C -0.01 -0.20 6.16 40.95 0.25 0.05 16 20 C -0.01 -0.19 3.38 -11.54 -0.04 -0.23 16 21 C -0.14 -2.39 8.79 71.98 0.63 -1.76 16 22 C -0.14 -2.65 9.18 71.98 0.66 -1.99 16 23 N -0.55 -16.15 6.15 -174.61 -1.07 -17.22 16 24 H 0.43 9.04 8.96 -92.70 -0.83 8.21 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.42 5.86 -2.39 -0.01 1.41 16 31 H 0.11 2.86 7.77 -2.39 -0.02 2.84 16 32 H 0.03 1.53 5.71 -2.39 -0.01 1.52 16 33 H 0.01 0.53 6.18 -2.39 -0.01 0.52 16 34 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.04 1.88 6.85 -2.38 -0.02 1.86 16 36 H 0.11 3.07 7.84 -2.38 -0.02 3.05 16 37 H 0.16 5.72 7.40 -2.91 -0.02 5.70 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.02 7.32 -2.39 -0.02 1.00 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.56 351.49 1.16 -79.40 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.15 Total: 19.00 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 7.05 Total: 0.02 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -6.88 Total: -130.46 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.18 Total: -18.22 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.24 kcal Total: -80.56 1.16 -79.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894003749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.370 kcal (2) G-P(sol) polarization free energy of solvation -80.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds