Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47630 * 111.00085 * 2 1 4 4 C 1.52584 * 111.73445 * 178.14456 * 3 2 1 5 5 C 1.53896 * 111.19940 * 53.66788 * 4 3 2 6 6 C 1.51624 * 106.97123 * 304.99458 * 5 4 3 7 7 H 1.08994 * 109.52992 * 303.60650 * 6 5 4 8 8 C 1.45628 * 110.99974 * 238.98094 * 2 1 3 9 9 H 1.09001 * 110.81504 * 67.13438 * 8 2 1 10 10 C 1.53580 * 115.87504 * 299.66856 * 8 2 1 11 11 C 1.55330 * 101.79586 * 206.27389 * 10 8 2 12 12 N 1.45446 * 117.43812 * 178.85499 * 6 5 4 13 13 C 1.34775 * 126.41961 * 31.18339 * 12 6 5 14 14 O 1.21584 * 120.00443 * 0.02562 * 13 12 6 15 15 N 1.34780 * 120.00099 * 180.02562 * 13 12 6 16 16 C 1.46500 * 120.00402 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47207 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.46836 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00167 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99826 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00079 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46941 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46918 * 119.99344 * 22 20 18 25 25 H 1.48500 * 109.46937 * 239.99575 * 22 20 18 26 26 H 1.08995 * 109.47659 * 56.04130 * 1 2 3 27 27 H 1.09006 * 109.47012 * 176.04752 * 1 2 3 28 28 H 1.09000 * 109.47118 * 296.04176 * 1 2 3 29 29 H 1.09000 * 109.02155 * 57.56751 * 3 2 1 30 30 H 1.09000 * 108.96711 * 298.69532 * 3 2 1 31 31 H 1.08997 * 109.13451 * 293.22682 * 4 3 2 32 32 H 1.09004 * 109.13479 * 174.10485 * 4 3 2 33 33 H 1.08999 * 109.94820 * 64.35693 * 5 4 3 34 34 H 1.09000 * 109.94983 * 185.62852 * 5 4 3 35 35 H 1.09000 * 110.95981 * 324.40046 * 10 8 2 36 36 H 1.09005 * 110.96415 * 88.10903 * 10 8 2 37 37 H 1.08995 * 109.92711 * 141.76589 * 11 10 8 38 38 H 1.09001 * 109.92769 * 263.08700 * 11 10 8 39 39 H 0.97002 * 119.99475 * 359.97438 * 15 13 12 40 40 H 1.08994 * 109.46833 * 300.00420 * 16 15 13 41 41 H 1.09004 * 109.46695 * 59.99858 * 16 15 13 42 42 H 1.08994 * 109.47397 * 300.00357 * 17 16 15 43 43 H 1.09003 * 109.46612 * 60.00264 * 17 16 15 44 44 H 0.96996 * 119.99735 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9980 1.3782 0.0000 4 6 3.5230 1.3980 0.0459 5 6 4.1249 0.5419 -1.0825 6 6 3.5234 -0.8441 -0.9553 7 1 3.7187 -1.2359 0.0428 8 6 1.9908 -0.7006 -1.1651 9 1 1.7600 -0.1555 -2.0804 10 6 1.5925 -2.1784 -1.2927 11 6 2.7706 -2.7541 -2.1252 12 7 3.9222 -1.8404 -1.9371 13 6 5.1151 -1.9177 -2.5595 14 8 5.9823 -1.1012 -2.3155 15 7 5.3469 -2.9003 -3.4525 16 6 6.6437 -2.9847 -4.1286 17 6 6.6445 -4.1808 -5.0828 18 6 7.9784 -4.2672 -5.7787 19 1 8.7483 -3.5414 -5.5625 20 6 8.2154 -5.2723 -6.6923 21 7 7.2776 -6.1559 -6.9560 22 14 9.8690 -5.3799 -7.5545 23 1 10.7451 -4.2769 -7.0844 24 1 10.5061 -6.6846 -7.2423 25 1 9.6707 -5.2643 -9.0217 26 1 -0.3634 0.5740 -0.8523 27 1 -0.3633 -1.0253 -0.0708 28 1 -0.3633 0.4512 0.9233 29 1 1.6094 1.9080 0.8698 30 1 1.6629 1.8864 -0.9042 31 1 3.8567 1.0076 1.0073 32 1 3.8704 2.4257 -0.0614 33 1 3.8694 0.9708 -2.0514 34 1 5.2080 0.4890 -0.9718 35 1 1.5382 -2.6535 -0.3132 36 1 0.6484 -2.2830 -1.8276 37 1 3.0258 -3.7515 -1.7674 38 1 2.4963 -2.7936 -3.1794 39 1 4.6551 -3.5519 -3.6469 40 1 6.8194 -2.0690 -4.6931 41 1 7.4325 -3.1114 -3.3870 42 1 6.4689 -5.0963 -4.5179 43 1 5.8557 -4.0544 -5.8243 44 1 7.4445 -6.8631 -7.5985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = -27.202679 kcal Electronic energy + Delta-G solvation = -22638.786334 eV Core-core repulsion = 19397.658190 eV Total energy + Delta-G solvation = -3241.128144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79747 -38.78796 -36.12004 -34.83364 -33.73106 -32.79571 -30.97056 -29.36128 -28.80867 -26.74881 -24.89105 -23.43374 -23.00656 -21.52634 -20.92317 -20.25012 -19.42020 -17.48741 -16.50603 -16.22664 -15.77953 -15.21828 -15.16799 -14.91295 -14.51122 -14.31710 -14.16802 -13.72652 -13.41770 -13.25720 -13.16080 -12.64890 -12.51530 -12.26893 -12.13109 -11.89286 -11.59159 -11.24117 -11.14252 -11.03543 -10.98154 -10.90740 -10.59590 -10.38291 -10.29760 -9.72531 -9.48580 -9.20631 -8.73469 -8.65038 -8.43720 -8.13619 -6.07683 -4.10043 2.83642 3.29725 3.37228 3.42800 3.58203 3.67819 4.08970 4.39307 4.41809 4.60141 4.72522 4.79497 4.82716 4.99294 5.05477 5.14642 5.17660 5.22002 5.29545 5.36147 5.51030 5.56250 5.57462 5.57860 5.62317 5.76705 5.87428 5.88992 6.14034 6.25644 6.36603 6.43064 6.50892 6.68449 6.80087 6.80959 7.05792 7.39111 7.59441 7.65685 7.91892 8.28042 8.43108 8.95313 9.05312 9.54660 11.04092 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.003115 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.428206 B = 8986.293003 C = 9569.338248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.050 3.950 4 C -0.115 4.115 5 C -0.121 4.121 6 C 0.165 3.835 7 H 0.074 0.926 8 C 0.057 3.943 9 H 0.057 0.943 10 C -0.119 4.119 11 C 0.103 3.897 12 N -0.638 5.638 13 C 0.719 3.281 14 O -0.591 6.591 15 N -0.737 5.737 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.021 0.979 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.530 11.189 14.014 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.077 4.077 4 C -0.154 4.154 5 C -0.159 4.159 6 C 0.059 3.941 7 H 0.092 0.908 8 C -0.053 4.053 9 H 0.075 0.925 10 C -0.157 4.157 11 C -0.021 4.021 12 N -0.378 5.378 13 C 0.421 3.579 14 O -0.470 6.470 15 N -0.390 5.390 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.629 11.373 14.465 24.142 hybrid contribution 0.075 -0.146 -1.449 1.458 sum -15.554 11.227 13.016 23.182 Atomic orbital electron populations 1.22404 0.87263 1.02195 1.00865 1.62527 1.07893 1.14548 1.39430 1.22213 0.95987 0.88721 1.00808 1.21613 0.93684 1.00331 0.99723 1.21683 1.02655 0.93300 0.98290 1.21053 0.91740 0.89424 0.91867 0.90798 1.22662 0.95608 0.94843 0.92193 0.92510 1.22489 0.97461 0.94555 1.01200 1.22345 0.85611 0.93925 1.00207 1.47297 1.12848 1.31649 1.45979 1.15562 0.80755 0.82396 0.79179 1.90856 1.44150 1.43483 1.68475 1.45554 1.18807 1.30664 1.43987 1.21590 0.81168 1.00748 0.94713 1.19324 0.98063 0.91620 0.93445 1.21096 0.98933 1.12586 1.23162 0.92157 1.24999 0.97106 0.95519 0.96722 1.69968 1.33097 1.15755 1.34562 0.86459 0.83819 0.78030 0.79276 1.19560 1.20948 1.20961 0.95575 0.91023 0.91244 0.90548 0.94835 0.91099 0.90968 0.92091 0.88945 0.89496 0.90225 0.91017 0.91266 0.77468 0.92814 0.92773 0.95985 0.96035 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.49 60.06 0.57 0.72 16 2 N -0.52 -4.71 4.96 -233.65 -1.16 -5.87 16 3 C 0.05 0.43 5.36 -3.64 -0.02 0.41 16 4 C -0.12 -1.11 5.99 -26.48 -0.16 -1.26 16 5 C -0.12 -1.57 5.03 -26.96 -0.14 -1.70 16 6 C 0.16 2.11 2.63 -67.95 -0.18 1.93 16 7 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 8 C 0.06 0.58 2.12 -66.85 -0.14 0.44 16 9 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 10 C -0.12 -1.02 5.67 -25.19 -0.14 -1.16 16 11 C 0.10 1.11 6.31 -1.87 -0.01 1.10 16 12 N -0.64 -9.28 3.28 -169.13 -0.55 -9.84 16 13 C 0.72 13.44 8.42 -86.92 -0.73 12.71 16 14 O -0.59 -12.96 14.55 5.29 0.08 -12.88 16 15 N -0.74 -13.81 5.52 -65.23 -0.36 -14.17 16 16 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 22 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.45 7.27 -51.93 -0.38 0.07 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.45 6.67 -51.93 -0.35 1.10 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.39 6.49 7.49 -40.82 -0.31 6.18 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -32.01 344.50 -10.37 -42.38 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.75 Total: 1.14 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.53 Total: 3.09 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -1.34 Total: -55.45 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.01 -10.37 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.174 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds