Wall clock time and date at job start Tue Mar 31 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47630 * 111.00060 * 2 1 4 4 C 1.52596 * 111.67076 * 181.82534 * 3 2 1 5 5 C 1.53896 * 111.19863 * 306.37131 * 4 3 2 6 6 C 1.51623 * 106.97545 * 55.00392 * 5 4 3 7 7 H 1.09001 * 109.52762 * 56.39382 * 6 5 4 8 8 C 1.45473 * 110.90391 * 121.06469 * 2 1 3 9 9 H 1.09001 * 111.28494 * 292.38692 * 8 2 1 10 10 C 1.53575 * 115.89775 * 60.30185 * 8 2 1 11 11 C 1.55341 * 101.79249 * 153.69691 * 10 8 2 12 12 N 1.45447 * 117.43923 * 182.11365 * 6 5 4 13 13 C 1.34766 * 126.42278 * 328.79677 * 12 6 5 14 14 O 1.21586 * 120.00248 * 0.02562 * 13 12 6 15 15 N 1.34777 * 120.00353 * 179.97438 * 13 12 6 16 16 C 1.46501 * 120.00549 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47246 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47013 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00366 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99935 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99804 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47341 * 59.99772 * 22 20 18 24 24 H 1.48503 * 109.46825 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47202 * 299.99666 * 22 20 18 26 26 H 1.08998 * 109.46944 * 56.04382 * 1 2 3 27 27 H 1.09002 * 109.47007 * 176.04567 * 1 2 3 28 28 H 1.09000 * 109.46652 * 296.04528 * 1 2 3 29 29 H 1.09002 * 109.02801 * 61.28194 * 3 2 1 30 30 H 1.09006 * 109.02870 * 302.36458 * 3 2 1 31 31 H 1.09002 * 109.13476 * 66.81067 * 4 3 2 32 32 H 1.08992 * 109.13414 * 185.98961 * 4 3 2 33 33 H 1.08999 * 109.95417 * 174.37348 * 5 4 3 34 34 H 1.08998 * 109.95223 * 295.64139 * 5 4 3 35 35 H 1.08998 * 110.96447 * 271.82366 * 10 8 2 36 36 H 1.09001 * 110.96239 * 35.56998 * 10 8 2 37 37 H 1.08993 * 109.92191 * 96.91842 * 11 10 8 38 38 H 1.08998 * 109.91805 * 218.22848 * 11 10 8 39 39 H 0.97002 * 119.99866 * 0.02562 * 15 13 12 40 40 H 1.09000 * 109.47309 * 300.00740 * 16 15 13 41 41 H 1.09008 * 109.46513 * 60.00553 * 16 15 13 42 42 H 1.09000 * 109.47422 * 300.00489 * 17 16 15 43 43 H 1.08994 * 109.47151 * 60.00870 * 17 16 15 44 44 H 0.96998 * 119.99827 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.5233 1.3963 -0.0452 5 6 4.1236 0.5390 1.0831 6 6 3.5206 -0.8463 0.9551 7 1 3.7160 -1.2379 -0.0432 8 6 1.9880 -0.7012 1.1641 9 1 1.7679 -0.1588 2.0835 10 6 1.5880 -2.1785 1.2908 11 6 2.7652 -2.7559 2.1238 12 7 3.9011 -1.8373 1.9493 13 6 5.0839 -1.9140 2.5908 14 8 5.9567 -1.1008 2.3559 15 7 5.2988 -2.8914 3.4936 16 6 6.5847 -2.9751 4.1905 17 6 6.5671 -4.1650 5.1521 18 6 7.8897 -4.2506 5.8695 19 1 8.6653 -3.5289 5.6602 20 6 8.1098 -5.2511 6.7923 21 7 7.1655 -6.1304 7.0468 22 14 9.7489 -5.3569 7.6820 23 1 9.9781 -4.1054 8.4481 24 1 9.7319 -6.5119 8.6153 25 1 10.8397 -5.5371 6.6905 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 -0.3633 0.4512 0.9233 29 1 1.6632 1.8875 0.9037 30 1 1.6104 1.9077 -0.8704 31 1 3.8569 1.0059 -1.0066 32 1 3.8717 2.4233 0.0637 33 1 5.2067 0.4849 0.9730 34 1 3.8682 0.9677 2.0521 35 1 0.6439 -2.2824 1.8256 36 1 1.5338 -2.6533 0.3111 37 1 2.4900 -2.7955 3.1777 38 1 3.0193 -3.7535 1.7657 39 1 4.6023 -3.5399 3.6813 40 1 7.3847 -3.1086 3.4623 41 1 6.7540 -2.0562 4.7520 42 1 5.7671 -4.0319 5.8803 43 1 6.3980 -5.0836 4.5904 44 1 7.3203 -6.8340 7.6963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:34 Heat of formation + Delta-G solvation = -27.194138 kcal Electronic energy + Delta-G solvation = -22650.660266 eV Core-core repulsion = 19409.532492 eV Total energy + Delta-G solvation = -3241.127774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84986 -38.79584 -36.16725 -34.83765 -33.73089 -32.79635 -30.97608 -29.35931 -28.82606 -26.74520 -24.88678 -23.42677 -23.01515 -21.54107 -20.92334 -20.24976 -19.42176 -17.50877 -16.50734 -16.23392 -15.79293 -15.22413 -15.17398 -14.91022 -14.51743 -14.30781 -14.16395 -13.74985 -13.41710 -13.24849 -13.15204 -12.64058 -12.52608 -12.25807 -12.14853 -11.88551 -11.59631 -11.25491 -11.15786 -11.00337 -10.96968 -10.91004 -10.62892 -10.37995 -10.28234 -9.73483 -9.48429 -9.23198 -8.73356 -8.64767 -8.42932 -8.13994 -6.07274 -4.09858 2.85246 3.32864 3.36385 3.40072 3.57631 3.68263 4.10241 4.39797 4.42131 4.60385 4.73153 4.79652 4.82234 4.99541 5.07182 5.14465 5.15965 5.22852 5.29732 5.36319 5.51399 5.56423 5.57586 5.57944 5.62858 5.76637 5.87759 5.88640 6.15685 6.24996 6.36250 6.42984 6.51775 6.68668 6.80016 6.81657 7.05512 7.38711 7.59169 7.65806 7.91940 8.28103 8.43172 8.94951 9.04892 9.54695 11.04429 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039020 B = 0.003121 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.400330 B = 8968.032383 C = 9548.251150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.050 3.950 4 C -0.115 4.115 5 C -0.120 4.120 6 C 0.164 3.836 7 H 0.075 0.925 8 C 0.056 3.944 9 H 0.057 0.943 10 C -0.119 4.119 11 C 0.102 3.898 12 N -0.636 5.636 13 C 0.718 3.282 14 O -0.591 6.591 15 N -0.737 5.737 16 C 0.140 3.860 17 C 0.014 3.986 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.392 0.608 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.248 11.141 -14.296 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.078 4.078 4 C -0.154 4.154 5 C -0.158 4.158 6 C 0.059 3.941 7 H 0.093 0.907 8 C -0.054 4.054 9 H 0.075 0.925 10 C -0.157 4.157 11 C -0.022 4.022 12 N -0.375 5.375 13 C 0.420 3.580 14 O -0.470 6.470 15 N -0.390 5.390 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.357 11.323 -14.731 24.104 hybrid contribution 0.084 -0.135 1.445 1.454 sum -15.273 11.187 -13.285 23.128 Atomic orbital electron populations 1.22400 0.87291 1.02505 1.00515 1.62511 1.07919 1.14515 1.39375 1.22218 0.95981 0.88743 1.00811 1.21616 0.93705 1.00328 0.99710 1.21668 1.02586 0.93259 0.98318 1.21081 0.91910 0.89475 0.91622 0.90712 1.22653 0.95685 0.94889 0.92167 0.92487 1.22485 0.97521 0.94492 1.01169 1.22159 0.85913 0.93850 1.00243 1.47048 1.13747 1.31726 1.45015 1.15588 0.80837 0.82370 0.79238 1.90857 1.43462 1.43560 1.69075 1.45561 1.19314 1.31133 1.43001 1.21592 0.81528 1.00755 0.94354 1.19311 0.98042 0.91675 0.93350 1.21022 0.99364 1.13030 1.22542 0.92262 1.24993 0.97034 0.95483 0.96771 1.69947 1.33030 1.16066 1.34355 0.86569 0.83877 0.77549 0.79511 1.20119 1.21265 1.20095 0.91328 0.90989 0.95562 0.94831 0.90536 0.91090 0.90960 0.89007 0.92059 0.90264 0.89527 0.91395 0.91048 0.77451 0.92771 0.92813 0.96039 0.95997 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.35 60.06 0.56 0.71 16 2 N -0.52 -4.70 4.95 -233.75 -1.16 -5.86 16 3 C 0.05 0.43 5.37 -3.63 -0.02 0.41 16 4 C -0.12 -1.10 6.00 -26.47 -0.16 -1.26 16 5 C -0.12 -1.55 5.00 -26.96 -0.13 -1.69 16 6 C 0.16 2.11 2.68 -67.95 -0.18 1.93 16 7 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 8 C 0.06 0.57 2.10 -66.94 -0.14 0.43 16 9 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 10 C -0.12 -1.03 5.80 -25.19 -0.15 -1.17 16 11 C 0.10 1.11 6.24 -2.46 -0.02 1.10 16 12 N -0.64 -9.25 3.23 -169.98 -0.55 -9.80 16 13 C 0.72 13.41 8.40 -86.93 -0.73 12.68 16 14 O -0.59 -12.95 14.58 5.29 0.08 -12.87 16 15 N -0.74 -13.81 5.52 -65.23 -0.36 -14.17 16 16 C 0.14 3.11 5.61 -4.04 -0.02 3.08 16 17 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.07 0.45 7.53 -51.93 -0.39 0.06 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.43 6.72 -51.93 -0.35 1.08 16 34 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.39 6.49 7.40 -40.82 -0.30 6.19 16 40 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -31.95 344.53 -10.38 -42.33 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.76 Total: 1.20 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -1.54 Total: 3.03 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -1.33 Total: -55.43 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.95 -10.38 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.139 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds