Wall clock time and date at job start Tue Mar 31 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46498 * 110.99701 * 2 1 4 4 C 1.53287 * 108.68538 * 188.69677 * 3 2 1 5 5 C 1.52997 * 108.27688 * 297.65480 * 4 3 2 6 6 C 1.51416 * 110.82401 * 57.01553 * 5 4 3 7 7 H 1.09002 * 108.78707 * 188.66526 * 6 5 4 8 8 C 1.46827 * 111.00201 * 126.06249 * 2 1 3 9 9 H 1.08998 * 112.93008 * 305.70862 * 8 2 1 10 10 C 1.55912 * 106.56324 * 70.00676 * 8 2 1 11 11 C 1.54467 * 102.68905 * 78.93922 * 10 8 2 12 12 N 1.46564 * 112.70075 * 68.02764 * 6 5 4 13 13 C 1.34769 * 125.99105 * 31.03221 * 12 6 5 14 14 O 1.21585 * 120.00159 * 0.02562 * 13 12 6 15 15 N 1.34780 * 119.99900 * 179.97438 * 13 12 6 16 16 C 1.46509 * 119.99768 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.46772 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46932 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99514 * 359.97438 * 18 17 16 20 20 C 1.37867 * 120.00232 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00411 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46541 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47097 * 120.00019 * 22 20 18 25 25 H 1.48496 * 109.47129 * 240.00011 * 22 20 18 26 26 H 1.08997 * 109.46708 * 293.93672 * 1 2 3 27 27 H 1.08999 * 109.46932 * 53.93547 * 1 2 3 28 28 H 1.08996 * 109.46880 * 173.93747 * 1 2 3 29 29 H 1.09007 * 109.56403 * 68.95663 * 3 2 1 30 30 H 1.09006 * 109.63672 * 308.47904 * 3 2 1 31 31 H 1.09002 * 109.71262 * 177.94474 * 4 3 2 32 32 H 1.08997 * 109.70647 * 57.35910 * 4 3 2 33 33 H 1.08995 * 109.20451 * 177.36422 * 5 4 3 34 34 H 1.09003 * 109.20569 * 296.71811 * 5 4 3 35 35 H 1.09007 * 110.76555 * 320.64289 * 10 8 2 36 36 H 1.08998 * 110.93145 * 197.31817 * 10 8 2 37 37 H 1.09004 * 109.89755 * 263.32554 * 11 10 8 38 38 H 1.08998 * 109.89552 * 142.09863 * 11 10 8 39 39 H 0.97000 * 120.00380 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47137 * 300.00276 * 16 15 13 41 41 H 1.08993 * 109.46580 * 60.00664 * 16 15 13 42 42 H 1.09002 * 109.47143 * 299.99817 * 17 16 15 43 43 H 1.09000 * 109.46875 * 60.00293 * 17 16 15 44 44 H 0.96994 * 120.00382 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9940 1.3677 0.0000 4 6 3.5100 1.3119 -0.2196 5 6 4.1367 0.5518 0.9511 6 6 3.5351 -0.8319 1.0783 7 1 3.8875 -1.2840 2.0054 8 6 1.9953 -0.8069 1.1081 9 1 1.6005 -0.5050 2.0781 10 6 1.6776 -2.2942 0.7648 11 6 2.7803 -2.6497 -0.2568 12 7 3.8942 -1.7097 -0.0391 13 6 5.0417 -1.6646 -0.7446 14 8 5.8917 -0.8396 -0.4706 15 7 5.2473 -2.5348 -1.7531 16 6 6.4950 -2.4861 -2.5196 17 6 6.4739 -3.5718 -3.5974 18 6 7.7575 -3.5222 -4.3855 19 1 8.5126 -2.7893 -4.1421 20 6 7.9680 -4.4124 -5.4170 21 7 7.0484 -5.3045 -5.7137 22 14 9.5594 -4.3514 -6.3934 23 1 10.4232 -3.2653 -5.8645 24 1 10.2669 -5.6511 -6.2686 25 1 9.2534 -4.0896 -7.8227 26 1 -0.3632 0.4170 0.9393 27 1 -0.3633 0.6050 -0.8307 28 1 -0.3633 -1.0219 -0.1085 29 1 1.7804 1.8406 0.9586 30 1 1.5288 1.9386 -0.8037 31 1 3.9133 2.3238 -0.2589 32 1 3.7273 0.7930 -1.1532 33 1 5.2104 0.4623 0.7867 34 1 3.9600 1.1050 1.8735 35 1 0.6893 -2.3841 0.3137 36 1 1.7546 -2.9235 1.6515 37 1 2.3956 -2.5408 -1.2708 38 1 3.1206 -3.6724 -0.0944 39 1 4.5694 -3.1932 -1.9714 40 1 6.5938 -1.5083 -2.9911 41 1 7.3390 -2.6540 -1.8507 42 1 6.3749 -4.5497 -3.1262 43 1 5.6298 -3.4035 -4.2662 44 1 7.1962 -5.9306 -6.4396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:36 Heat of formation + Delta-G solvation = -21.629633 kcal Electronic energy + Delta-G solvation = -23118.114695 eV Core-core repulsion = 19877.228216 eV Total energy + Delta-G solvation = -3240.886479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78552 -38.54024 -35.70294 -34.86494 -33.64714 -32.74430 -30.92568 -29.14184 -28.85309 -26.64924 -24.81877 -23.45663 -23.11710 -21.58336 -20.95782 -20.04672 -18.91026 -17.19773 -16.66148 -16.29205 -15.74279 -15.41196 -15.16400 -14.69582 -14.48002 -14.16628 -13.87392 -13.63363 -13.29472 -13.08813 -12.93428 -12.68252 -12.32884 -12.22256 -12.04040 -11.85782 -11.62913 -11.48654 -11.11485 -11.00673 -10.80329 -10.57717 -10.53296 -10.38334 -10.25113 -9.59841 -9.34831 -9.11172 -8.55995 -8.46422 -8.39221 -8.03259 -6.04933 -4.07212 3.01165 3.31479 3.38952 3.44608 3.64009 3.72616 4.16102 4.43154 4.49593 4.68087 4.79603 4.87756 4.98321 5.12527 5.15183 5.20254 5.27916 5.32219 5.35538 5.48592 5.53536 5.55416 5.64335 5.71731 5.77931 5.89234 6.00153 6.01291 6.24579 6.39241 6.45128 6.47587 6.71674 6.84649 6.89571 6.96836 7.15521 7.47021 7.64276 7.69749 7.94914 8.32081 8.52139 8.98483 9.14202 9.57353 11.06846 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.003534 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.373514 B = 7921.816347 C = 8216.251752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.059 3.941 4 C -0.107 4.107 5 C -0.141 4.141 6 C 0.171 3.829 7 H 0.062 0.938 8 C 0.070 3.930 9 H 0.070 0.930 10 C -0.125 4.125 11 C 0.112 3.888 12 N -0.626 5.626 13 C 0.722 3.278 14 O -0.594 6.594 15 N -0.737 5.737 16 C 0.142 3.858 17 C 0.013 3.987 18 C -0.518 4.518 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.022 0.978 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.755 8.830 14.937 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.259 5.259 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.179 4.179 6 C 0.066 3.934 7 H 0.080 0.920 8 C -0.039 4.039 9 H 0.088 0.912 10 C -0.163 4.163 11 C -0.011 4.011 12 N -0.365 5.365 13 C 0.424 3.576 14 O -0.474 6.474 15 N -0.390 5.390 16 C 0.019 3.981 17 C -0.025 4.025 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.880 9.068 14.515 22.679 hybrid contribution 0.034 -0.099 -0.014 0.105 sum -14.846 8.969 14.502 22.609 Atomic orbital electron populations 1.22397 0.87427 1.02338 1.00190 1.61527 1.07085 1.13513 1.43772 1.22105 0.96530 0.88471 0.99756 1.21471 0.93105 1.00018 0.99872 1.21678 1.04685 0.93621 0.97904 1.20824 0.91995 0.91585 0.88960 0.92005 1.22937 0.94838 0.93664 0.92464 0.91238 1.22923 0.99225 0.94950 0.99184 1.21883 0.86857 0.92618 0.99780 1.47225 1.16867 1.36370 1.36021 1.15506 0.80684 0.81956 0.79460 1.90769 1.44658 1.40669 1.71271 1.45549 1.22585 1.36432 1.34466 1.21558 0.82706 1.00871 0.92978 1.19324 0.98020 0.92825 0.92301 1.21100 1.02268 1.16880 1.15454 0.92186 1.24993 0.96881 0.95259 0.97195 1.69970 1.33861 1.19426 1.30135 0.86468 0.83417 0.77963 0.79785 1.19570 1.20985 1.20971 0.95954 0.91403 0.91122 0.95195 0.90921 0.91748 0.90885 0.87252 0.92416 0.89655 0.90572 0.91331 0.92020 0.77483 0.92886 0.92899 0.96046 0.96010 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.07 0.56 0.75 16 2 N -0.53 -5.44 4.29 -232.58 -1.00 -6.44 16 3 C 0.06 0.61 5.49 -3.89 -0.02 0.59 16 4 C -0.11 -1.35 6.09 -26.58 -0.16 -1.51 16 5 C -0.14 -1.83 4.95 -27.53 -0.14 -1.97 16 6 C 0.17 2.12 2.97 -68.16 -0.20 1.92 16 7 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 8 C 0.07 0.68 3.07 -65.66 -0.20 0.47 16 9 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.12 -1.06 6.38 -24.41 -0.16 -1.22 16 11 C 0.11 1.27 6.05 -2.80 -0.02 1.26 16 12 N -0.63 -9.06 3.18 -170.45 -0.54 -9.60 16 13 C 0.72 13.40 7.96 -86.92 -0.69 12.71 16 14 O -0.59 -12.75 13.83 5.29 0.07 -12.68 16 15 N -0.74 -13.98 5.52 -65.22 -0.36 -14.34 16 16 C 0.14 3.16 5.61 -4.03 -0.02 3.13 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 0.51 8.03 -51.93 -0.42 0.09 16 28 H 0.07 0.49 6.18 -51.93 -0.32 0.17 16 29 H 0.03 0.28 8.14 -51.92 -0.42 -0.14 16 30 H 0.07 0.70 8.02 -51.93 -0.42 0.29 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.17 7.76 -51.93 -0.40 0.76 16 33 H 0.11 1.80 5.50 -51.93 -0.29 1.51 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.63 6.03 -51.93 -0.31 0.32 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 6.70 7.48 -40.82 -0.31 6.39 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -31.84 339.49 -10.09 -41.93 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.50 Total: 2.19 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.60 Total: 2.92 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -1.16 Total: -56.10 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.84 -10.09 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.302 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds