Wall clock time and date at job start Tue Mar 31 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46498 * 110.99701 * 2 1 4 4 C 1.53287 * 108.68538 * 188.69677 * 3 2 1 5 5 C 1.52997 * 108.27688 * 297.65480 * 4 3 2 6 6 C 1.51416 * 110.82401 * 57.01553 * 5 4 3 7 7 H 1.09002 * 108.78707 * 188.66526 * 6 5 4 8 8 C 1.46827 * 111.00201 * 126.06249 * 2 1 3 9 9 H 1.08998 * 112.93008 * 305.70862 * 8 2 1 10 10 C 1.55912 * 106.56324 * 70.00676 * 8 2 1 11 11 C 1.54467 * 102.68905 * 78.93922 * 10 8 2 12 12 N 1.46564 * 112.70075 * 68.02764 * 6 5 4 13 13 C 1.34769 * 125.99105 * 31.03221 * 12 6 5 14 14 O 1.21585 * 120.00159 * 0.02562 * 13 12 6 15 15 N 1.34780 * 119.99900 * 179.97438 * 13 12 6 16 16 C 1.46509 * 119.99768 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.46772 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46932 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99514 * 359.97438 * 18 17 16 20 20 C 1.37867 * 120.00232 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00411 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46541 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47097 * 120.00019 * 22 20 18 25 25 H 1.48496 * 109.47129 * 240.00011 * 22 20 18 26 26 H 1.08997 * 109.46708 * 293.93672 * 1 2 3 27 27 H 1.08999 * 109.46932 * 53.93547 * 1 2 3 28 28 H 1.08996 * 109.46880 * 173.93747 * 1 2 3 29 29 H 1.09007 * 109.56403 * 68.95663 * 3 2 1 30 30 H 1.09006 * 109.63672 * 308.47904 * 3 2 1 31 31 H 1.09002 * 109.71262 * 177.94474 * 4 3 2 32 32 H 1.08997 * 109.70647 * 57.35910 * 4 3 2 33 33 H 1.08995 * 109.20451 * 177.36422 * 5 4 3 34 34 H 1.09003 * 109.20569 * 296.71811 * 5 4 3 35 35 H 1.09007 * 110.76555 * 320.64289 * 10 8 2 36 36 H 1.08998 * 110.93145 * 197.31817 * 10 8 2 37 37 H 1.09004 * 109.89755 * 263.32554 * 11 10 8 38 38 H 1.08998 * 109.89552 * 142.09863 * 11 10 8 39 39 H 0.97000 * 120.00380 * 0.02562 * 15 13 12 40 40 H 1.09002 * 109.47137 * 300.00276 * 16 15 13 41 41 H 1.08993 * 109.46580 * 60.00664 * 16 15 13 42 42 H 1.09002 * 109.47143 * 299.99817 * 17 16 15 43 43 H 1.09000 * 109.46875 * 60.00293 * 17 16 15 44 44 H 0.96994 * 120.00382 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9940 1.3677 0.0000 4 6 3.5100 1.3119 -0.2196 5 6 4.1367 0.5518 0.9511 6 6 3.5351 -0.8319 1.0783 7 1 3.8875 -1.2840 2.0054 8 6 1.9953 -0.8069 1.1081 9 1 1.6005 -0.5050 2.0781 10 6 1.6776 -2.2942 0.7648 11 6 2.7803 -2.6497 -0.2568 12 7 3.8942 -1.7097 -0.0391 13 6 5.0417 -1.6646 -0.7446 14 8 5.8917 -0.8396 -0.4706 15 7 5.2473 -2.5348 -1.7531 16 6 6.4950 -2.4861 -2.5196 17 6 6.4739 -3.5718 -3.5974 18 6 7.7575 -3.5222 -4.3855 19 1 8.5126 -2.7893 -4.1421 20 6 7.9680 -4.4124 -5.4170 21 7 7.0484 -5.3045 -5.7137 22 14 9.5594 -4.3514 -6.3934 23 1 10.4232 -3.2653 -5.8645 24 1 10.2669 -5.6511 -6.2686 25 1 9.2534 -4.0896 -7.8227 26 1 -0.3632 0.4170 0.9393 27 1 -0.3633 0.6050 -0.8307 28 1 -0.3633 -1.0219 -0.1085 29 1 1.7804 1.8406 0.9586 30 1 1.5288 1.9386 -0.8037 31 1 3.9133 2.3238 -0.2589 32 1 3.7273 0.7930 -1.1532 33 1 5.2104 0.4623 0.7867 34 1 3.9600 1.1050 1.8735 35 1 0.6893 -2.3841 0.3137 36 1 1.7546 -2.9235 1.6515 37 1 2.3956 -2.5408 -1.2708 38 1 3.1206 -3.6724 -0.0944 39 1 4.5694 -3.1932 -1.9714 40 1 6.5938 -1.5083 -2.9911 41 1 7.3390 -2.6540 -1.8507 42 1 6.3749 -4.5497 -3.1262 43 1 5.6298 -3.4035 -4.2662 44 1 7.1962 -5.9306 -6.4396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894130270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:36 Heat of formation + Delta-G solvation = -43.475055 kcal Electronic energy + Delta-G solvation = -23119.061984 eV Core-core repulsion = 19877.228216 eV Total energy + Delta-G solvation = -3241.833767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85870 -39.81594 -36.75563 -36.54611 -34.93118 -34.44927 -32.29446 -30.69357 -29.86707 -27.37373 -26.73645 -24.55012 -24.08960 -22.90937 -22.44207 -21.20777 -20.14589 -18.59798 -18.28481 -17.58991 -16.88955 -16.49866 -16.43110 -16.33165 -15.77475 -15.44635 -15.25911 -14.83770 -14.32458 -14.28189 -14.26471 -14.06638 -13.56112 -13.21183 -13.19007 -12.98132 -12.90666 -12.55956 -12.50731 -12.41799 -12.33127 -12.20961 -11.85171 -11.62881 -11.44789 -11.38599 -11.29520 -10.61121 -10.59429 -10.07826 -9.34507 -9.16019 -8.23622 -6.34168 1.41532 1.41933 1.55544 1.72159 2.23272 2.41479 2.95809 3.09776 3.10951 3.52050 3.66300 3.93626 4.07948 4.12202 4.22593 4.35384 4.45801 4.50842 4.52792 4.59018 4.61265 4.65825 4.72499 4.81187 4.83500 4.85883 4.89483 4.99676 5.04335 5.13136 5.23098 5.26735 5.31692 5.36572 5.56177 5.58701 5.66901 5.80951 6.14911 6.18563 6.21078 6.25360 6.78910 7.08716 7.35232 7.67192 8.88710 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029362 B = 0.003534 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.373514 B = 7921.816347 C = 8216.251752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.067 3.933 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.159 3.841 7 H 0.070 0.930 8 C 0.079 3.921 9 H 0.097 0.903 10 C -0.112 4.112 11 C 0.103 3.897 12 N -0.621 5.621 13 C 0.716 3.284 14 O -0.629 6.629 15 N -0.736 5.736 16 C 0.164 3.836 17 C 0.026 3.974 18 C -0.545 4.545 19 H 0.058 0.942 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.007 0.993 43 H 0.006 0.994 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.338 8.921 16.092 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.061 4.061 4 C -0.142 4.142 5 C -0.177 4.177 6 C 0.055 3.945 7 H 0.088 0.912 8 C -0.030 4.030 9 H 0.114 0.886 10 C -0.150 4.150 11 C -0.019 4.019 12 N -0.359 5.359 13 C 0.418 3.582 14 O -0.511 6.511 15 N -0.390 5.390 16 C 0.040 3.960 17 C -0.012 4.012 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.026 0.974 43 H 0.024 0.976 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.527 9.150 15.702 24.564 hybrid contribution 0.484 -0.112 -0.344 0.604 sum -16.043 9.039 15.358 23.978 Atomic orbital electron populations 1.22418 0.85589 1.03150 1.00899 1.61496 1.08759 1.13376 1.44501 1.21997 0.94234 0.89081 1.00786 1.21398 0.95520 0.99523 0.97742 1.21590 1.02203 0.94788 0.99081 1.21134 0.94499 0.90708 0.88203 0.91214 1.22937 0.92184 0.94330 0.93552 0.88601 1.22940 0.98595 0.94375 0.99073 1.22144 0.86812 0.92325 1.00655 1.47260 1.16058 1.37045 1.35488 1.15635 0.81699 0.81356 0.79503 1.90758 1.46350 1.41809 1.72195 1.45281 1.21783 1.37227 1.34731 1.21026 0.83990 0.98880 0.92116 1.19110 0.96619 0.92973 0.92473 1.21479 1.03256 1.17258 1.16394 0.92341 1.25877 1.00467 0.94664 0.98129 1.70070 1.35788 1.20008 1.30767 0.85375 0.79018 0.78288 0.78227 1.18998 1.20103 1.20140 0.94602 0.91463 0.90119 0.93440 0.90529 0.91423 0.95013 0.91238 0.89905 0.87903 0.88431 0.92121 0.91321 0.76408 0.94198 0.93917 0.97424 0.97601 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.40 127.69 1.20 1.52 16 2 N -0.56 -9.92 4.29 -889.73 -3.82 -13.74 16 3 C 0.07 1.25 5.49 86.48 0.47 1.72 16 4 C -0.10 -2.64 6.09 30.69 0.19 -2.45 16 5 C -0.14 -3.58 4.95 30.07 0.15 -3.43 16 6 C 0.16 3.71 2.97 44.81 0.13 3.84 16 7 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 8 C 0.08 1.26 3.07 46.29 0.14 1.41 16 9 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 10 C -0.11 -1.52 6.38 32.10 0.20 -1.32 16 11 C 0.10 2.19 6.05 86.71 0.52 2.72 16 12 N -0.62 -17.85 3.18 -811.44 -2.58 -20.43 16 13 C 0.72 27.47 7.96 179.06 1.43 28.90 16 14 O -0.63 -28.33 13.83 -3.98 -0.06 -28.38 16 15 N -0.74 -28.91 5.52 -478.52 -2.64 -31.56 16 16 C 0.16 7.63 5.61 86.38 0.48 8.11 16 17 C 0.03 1.36 5.09 29.85 0.15 1.51 16 18 C -0.55 -31.43 9.11 25.60 0.23 -31.19 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.01 0.42 5.46 84.65 0.46 0.88 16 21 N -0.93 -55.26 13.29 21.44 0.28 -54.97 16 22 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.83 8.03 -2.39 -0.02 0.81 16 28 H 0.08 0.82 6.18 -2.39 -0.01 0.80 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 1.36 8.02 -2.38 -0.02 1.34 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.05 7.76 -2.39 -0.02 1.04 16 33 H 0.07 2.39 5.50 -2.39 -0.01 2.38 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.10 6.03 -2.38 -0.01 1.09 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.40 14.09 7.48 -92.71 -0.69 13.40 16 40 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -70.55 339.49 -0.72 -71.27 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.28 Total: 19.10 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.77 Total: 12.23 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -8.75 Total: -120.70 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.06 Total: -28.38 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -70.55 -0.72 -71.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.800 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds