Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46498 * 111.00397 * 2 1 4 4 C 1.53284 * 108.68599 * 171.26806 * 3 2 1 5 5 C 1.53009 * 108.23435 * 62.41298 * 4 3 2 6 6 C 1.51410 * 110.81867 * 302.94383 * 5 4 3 7 7 H 1.09002 * 108.78956 * 171.91940 * 6 5 4 8 8 C 1.46836 * 110.99633 * 233.97496 * 2 1 3 9 9 H 1.09000 * 112.38852 * 54.71430 * 8 2 1 10 10 C 1.55915 * 106.55744 * 289.97486 * 8 2 1 11 11 C 1.54457 * 102.69043 * 281.07912 * 10 8 2 12 12 N 1.46561 * 112.69725 * 292.00443 * 6 5 4 13 13 C 1.34779 * 125.99046 * 328.92516 * 12 6 5 14 14 O 1.21587 * 119.99669 * 359.97438 * 13 12 6 15 15 N 1.34775 * 119.99877 * 179.97438 * 13 12 6 16 16 C 1.46505 * 119.99866 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47417 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47538 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99732 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00259 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99604 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46828 * 89.99783 * 22 20 18 24 24 H 1.48492 * 109.47040 * 209.99791 * 22 20 18 25 25 H 1.48496 * 109.47074 * 330.00093 * 22 20 18 26 26 H 1.09002 * 109.47401 * 186.02294 * 1 2 3 27 27 H 1.09001 * 109.46874 * 66.02306 * 1 2 3 28 28 H 1.09004 * 109.46970 * 306.02440 * 1 2 3 29 29 H 1.08996 * 109.60259 * 291.03065 * 3 2 1 30 30 H 1.08999 * 109.60451 * 51.50778 * 3 2 1 31 31 H 1.09008 * 109.71038 * 302.73270 * 4 3 2 32 32 H 1.09001 * 109.74921 * 182.12339 * 4 3 2 33 33 H 1.09001 * 109.20205 * 182.59916 * 5 4 3 34 34 H 1.09002 * 109.20095 * 63.28995 * 5 4 3 35 35 H 1.09005 * 110.76361 * 39.37726 * 10 8 2 36 36 H 1.08994 * 110.76314 * 162.77534 * 10 8 2 37 37 H 1.09003 * 109.89904 * 217.89927 * 11 10 8 38 38 H 1.08997 * 109.90205 * 96.67463 * 11 10 8 39 39 H 0.96996 * 120.00316 * 359.97438 * 15 13 12 40 40 H 1.09003 * 109.47274 * 300.00641 * 16 15 13 41 41 H 1.09003 * 109.46858 * 59.99650 * 16 15 13 42 42 H 1.09003 * 109.47416 * 300.00547 * 17 16 15 43 43 H 1.09003 * 109.47398 * 59.99974 * 17 16 15 44 44 H 0.97004 * 119.99268 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3676 0.0000 4 6 3.5100 1.3117 0.2204 5 6 4.1365 0.5526 -0.9511 6 6 3.5351 -0.8311 -1.0789 7 1 3.8954 -1.2866 -2.0013 8 6 1.9951 -0.8063 -1.1087 9 1 1.6004 -0.4916 -2.0747 10 6 1.6777 -2.2938 -0.7660 11 6 2.7804 -2.6495 0.2554 12 7 3.8942 -1.7093 0.0381 13 6 5.0420 -1.6648 0.7432 14 8 5.8923 -0.8400 0.4690 15 7 5.2473 -2.5346 1.7520 16 6 6.4952 -2.4866 2.5181 17 6 6.4742 -3.5724 3.5957 18 6 7.7581 -3.5235 4.3833 19 1 8.5134 -2.7908 4.1398 20 6 7.9686 -4.4140 5.4146 21 7 7.0487 -5.3058 5.7114 22 14 9.5598 -4.3528 6.3913 23 1 9.3959 -3.4355 7.5476 24 1 9.8916 -5.7143 6.8826 25 1 10.6567 -3.8599 5.5201 26 1 -0.3634 -1.0220 0.1078 27 1 -0.3633 0.4176 -0.9390 28 1 -0.3633 0.6044 0.8312 29 1 1.7812 1.8411 -0.9584 30 1 1.5286 1.9381 0.8037 31 1 3.7269 0.7915 1.1535 32 1 3.9139 2.3233 0.2611 33 1 5.2103 0.4631 -0.7871 34 1 3.9600 1.1069 -1.8729 35 1 0.6894 -2.3841 -0.3150 36 1 1.7570 -2.9203 -1.6544 37 1 3.1210 -3.6721 0.0927 38 1 2.3957 -2.5410 1.2695 39 1 4.5688 -3.1923 1.9710 40 1 7.3390 -2.6554 1.8490 41 1 6.5950 -1.5086 2.9890 42 1 5.6304 -3.4041 4.2648 43 1 6.3746 -4.5502 3.1244 44 1 7.1970 -5.9326 6.4367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -21.607054 kcal Electronic energy + Delta-G solvation = -23118.587242 eV Core-core repulsion = 19877.701742 eV Total energy + Delta-G solvation = -3240.885500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78727 -38.54081 -35.70380 -34.86490 -33.64710 -32.74338 -30.92069 -29.14280 -28.85143 -26.64954 -24.81704 -23.45308 -23.11574 -21.58330 -20.95629 -20.04985 -18.91172 -17.19800 -16.65690 -16.28957 -15.74541 -15.41065 -15.16102 -14.69851 -14.48290 -14.16523 -13.87240 -13.63260 -13.29416 -13.08789 -12.93224 -12.68334 -12.32698 -12.21891 -12.03707 -11.86013 -11.63703 -11.48833 -11.12401 -10.98856 -10.80491 -10.59208 -10.53139 -10.38349 -10.24400 -9.59886 -9.35446 -9.11992 -8.55815 -8.46289 -8.38777 -8.03126 -6.04789 -4.07066 3.01168 3.32759 3.38683 3.43428 3.64008 3.72683 4.16046 4.43242 4.49864 4.68097 4.79383 4.87312 4.98432 5.12549 5.15190 5.20416 5.27827 5.32321 5.35514 5.48473 5.53846 5.55464 5.64252 5.71627 5.77955 5.89262 6.00180 6.01376 6.24678 6.39203 6.45153 6.47554 6.71667 6.84685 6.89517 6.96700 7.15546 7.47015 7.64198 7.69822 7.94959 8.32170 8.52192 8.98338 9.14242 9.57367 11.06952 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029363 B = 0.003534 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.349399 B = 7921.521624 C = 8215.847229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.059 3.941 4 C -0.107 4.107 5 C -0.141 4.141 6 C 0.171 3.829 7 H 0.062 0.938 8 C 0.071 3.929 9 H 0.070 0.930 10 C -0.124 4.124 11 C 0.112 3.888 12 N -0.626 5.626 13 C 0.722 3.278 14 O -0.594 6.594 15 N -0.737 5.737 16 C 0.142 3.858 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.070 0.930 27 H 0.022 0.978 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 8.806 -14.928 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.260 5.260 3 C -0.069 4.069 4 C -0.145 4.145 5 C -0.179 4.179 6 C 0.066 3.934 7 H 0.080 0.920 8 C -0.039 4.039 9 H 0.088 0.912 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.365 5.365 13 C 0.424 3.576 14 O -0.474 6.474 15 N -0.390 5.390 16 C 0.019 3.981 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.890 9.038 -14.506 22.667 hybrid contribution 0.043 -0.073 0.018 0.087 sum -14.847 8.965 -14.488 22.599 Atomic orbital electron populations 1.22396 0.87413 1.02334 1.00189 1.61518 1.07085 1.13508 1.43876 1.22100 0.96527 0.88478 0.99753 1.21475 0.93110 1.00024 0.99863 1.21680 1.04686 0.93637 0.97905 1.20844 0.92014 0.91585 0.88952 0.91983 1.22942 0.94791 0.93677 0.92445 0.91239 1.22910 0.99229 0.94883 0.99167 1.21880 0.86854 0.92625 0.99775 1.47239 1.16846 1.36326 1.36124 1.15509 0.80691 0.81951 0.79461 1.90770 1.44657 1.40676 1.71274 1.45544 1.22541 1.36508 1.34431 1.21556 0.82702 1.00862 0.92996 1.19316 0.97998 0.92820 0.92293 1.21062 1.02269 1.16926 1.15538 0.92244 1.24993 0.96884 0.95241 0.97182 1.69964 1.33914 1.19377 1.30129 0.86517 0.83587 0.77230 0.80255 1.20588 1.21218 1.19725 0.91123 0.95959 0.91405 0.95193 0.90935 0.90885 0.91746 0.87263 0.92413 0.89626 0.90565 0.92013 0.91332 0.77482 0.92903 0.92888 0.96025 0.96048 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.07 0.56 0.76 16 2 N -0.53 -5.45 4.29 -232.57 -1.00 -6.45 16 3 C 0.06 0.61 5.48 -3.90 -0.02 0.59 16 4 C -0.11 -1.35 6.09 -26.58 -0.16 -1.51 16 5 C -0.14 -1.84 4.95 -27.53 -0.14 -1.97 16 6 C 0.17 2.11 2.97 -68.16 -0.20 1.91 16 7 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.07 0.68 3.07 -65.65 -0.20 0.48 16 9 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 10 C -0.12 -1.06 6.37 -24.41 -0.16 -1.21 16 11 C 0.11 1.27 6.05 -2.80 -0.02 1.26 16 12 N -0.63 -9.06 3.17 -170.45 -0.54 -9.60 16 13 C 0.72 13.41 7.96 -86.92 -0.69 12.72 16 14 O -0.59 -12.76 13.83 5.29 0.07 -12.69 16 15 N -0.74 -13.99 5.52 -65.22 -0.36 -14.35 16 16 C 0.14 3.16 5.61 -4.04 -0.02 3.14 16 17 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 22 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.07 0.49 6.19 -51.93 -0.32 0.17 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 0.51 8.03 -51.93 -0.42 0.09 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.70 8.01 -51.93 -0.42 0.29 16 31 H 0.07 1.17 7.76 -51.92 -0.40 0.76 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.80 5.50 -51.93 -0.29 1.51 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.64 6.03 -51.93 -0.31 0.32 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.39 6.70 7.48 -40.82 -0.31 6.39 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -31.83 339.48 -10.09 -41.92 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.50 Total: 2.23 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.60 Total: 2.92 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -1.16 Total: -56.13 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.83 -10.09 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.317 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds