Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46498 * 111.00397 * 2 1 4 4 C 1.53284 * 108.68599 * 171.26806 * 3 2 1 5 5 C 1.53009 * 108.23435 * 62.41298 * 4 3 2 6 6 C 1.51410 * 110.81867 * 302.94383 * 5 4 3 7 7 H 1.09002 * 108.78956 * 171.91940 * 6 5 4 8 8 C 1.46836 * 110.99633 * 233.97496 * 2 1 3 9 9 H 1.09000 * 112.38852 * 54.71430 * 8 2 1 10 10 C 1.55915 * 106.55744 * 289.97486 * 8 2 1 11 11 C 1.54457 * 102.69043 * 281.07912 * 10 8 2 12 12 N 1.46561 * 112.69725 * 292.00443 * 6 5 4 13 13 C 1.34779 * 125.99046 * 328.92516 * 12 6 5 14 14 O 1.21587 * 119.99669 * 359.97438 * 13 12 6 15 15 N 1.34775 * 119.99877 * 179.97438 * 13 12 6 16 16 C 1.46505 * 119.99866 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47417 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47538 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99732 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00259 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99604 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46828 * 89.99783 * 22 20 18 24 24 H 1.48492 * 109.47040 * 209.99791 * 22 20 18 25 25 H 1.48496 * 109.47074 * 330.00093 * 22 20 18 26 26 H 1.09002 * 109.47401 * 186.02294 * 1 2 3 27 27 H 1.09001 * 109.46874 * 66.02306 * 1 2 3 28 28 H 1.09004 * 109.46970 * 306.02440 * 1 2 3 29 29 H 1.08996 * 109.60259 * 291.03065 * 3 2 1 30 30 H 1.08999 * 109.60451 * 51.50778 * 3 2 1 31 31 H 1.09008 * 109.71038 * 302.73270 * 4 3 2 32 32 H 1.09001 * 109.74921 * 182.12339 * 4 3 2 33 33 H 1.09001 * 109.20205 * 182.59916 * 5 4 3 34 34 H 1.09002 * 109.20095 * 63.28995 * 5 4 3 35 35 H 1.09005 * 110.76361 * 39.37726 * 10 8 2 36 36 H 1.08994 * 110.76314 * 162.77534 * 10 8 2 37 37 H 1.09003 * 109.89904 * 217.89927 * 11 10 8 38 38 H 1.08997 * 109.90205 * 96.67463 * 11 10 8 39 39 H 0.96996 * 120.00316 * 359.97438 * 15 13 12 40 40 H 1.09003 * 109.47274 * 300.00641 * 16 15 13 41 41 H 1.09003 * 109.46858 * 59.99650 * 16 15 13 42 42 H 1.09003 * 109.47416 * 300.00547 * 17 16 15 43 43 H 1.09003 * 109.47398 * 59.99974 * 17 16 15 44 44 H 0.97004 * 119.99268 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3676 0.0000 4 6 3.5100 1.3117 0.2204 5 6 4.1365 0.5526 -0.9511 6 6 3.5351 -0.8311 -1.0789 7 1 3.8954 -1.2866 -2.0013 8 6 1.9951 -0.8063 -1.1087 9 1 1.6004 -0.4916 -2.0747 10 6 1.6777 -2.2938 -0.7660 11 6 2.7804 -2.6495 0.2554 12 7 3.8942 -1.7093 0.0381 13 6 5.0420 -1.6648 0.7432 14 8 5.8923 -0.8400 0.4690 15 7 5.2473 -2.5346 1.7520 16 6 6.4952 -2.4866 2.5181 17 6 6.4742 -3.5724 3.5957 18 6 7.7581 -3.5235 4.3833 19 1 8.5134 -2.7908 4.1398 20 6 7.9686 -4.4140 5.4146 21 7 7.0487 -5.3058 5.7114 22 14 9.5598 -4.3528 6.3913 23 1 9.3959 -3.4355 7.5476 24 1 9.8916 -5.7143 6.8826 25 1 10.6567 -3.8599 5.5201 26 1 -0.3634 -1.0220 0.1078 27 1 -0.3633 0.4176 -0.9390 28 1 -0.3633 0.6044 0.8312 29 1 1.7812 1.8411 -0.9584 30 1 1.5286 1.9381 0.8037 31 1 3.7269 0.7915 1.1535 32 1 3.9139 2.3233 0.2611 33 1 5.2103 0.4631 -0.7871 34 1 3.9600 1.1069 -1.8729 35 1 0.6894 -2.3841 -0.3150 36 1 1.7570 -2.9203 -1.6544 37 1 3.1210 -3.6721 0.0927 38 1 2.3957 -2.5410 1.2695 39 1 4.5688 -3.1923 1.9710 40 1 7.3390 -2.6554 1.8490 41 1 6.5950 -1.5086 2.9890 42 1 5.6304 -3.4041 4.2648 43 1 6.3746 -4.5502 3.1244 44 1 7.1970 -5.9326 6.4367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894130271.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = -43.448000 kcal Electronic energy + Delta-G solvation = -23119.534336 eV Core-core repulsion = 19877.701742 eV Total energy + Delta-G solvation = -3241.832594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86079 -39.81725 -36.75745 -36.54614 -34.93130 -34.44981 -32.29127 -30.69145 -29.86768 -27.37416 -26.73468 -24.54749 -24.08901 -22.90822 -22.44239 -21.20941 -20.14962 -18.59630 -18.28362 -17.58748 -16.89020 -16.50204 -16.42822 -16.33379 -15.77619 -15.44879 -15.25686 -14.83492 -14.32159 -14.27779 -14.26439 -14.06750 -13.56095 -13.21612 -13.19350 -12.97521 -12.89787 -12.56082 -12.51773 -12.42367 -12.32921 -12.20532 -11.85457 -11.62635 -11.46159 -11.38553 -11.30188 -10.61026 -10.59121 -10.07848 -9.34431 -9.15930 -8.23512 -6.34090 1.41889 1.42939 1.54301 1.72095 2.23298 2.41528 2.95634 3.09754 3.11062 3.52044 3.66587 3.93341 4.07723 4.12119 4.22116 4.35551 4.45770 4.50689 4.52761 4.59059 4.61217 4.65869 4.72528 4.81166 4.83390 4.85834 4.89555 4.99688 5.04304 5.13235 5.23261 5.26678 5.31621 5.36448 5.56059 5.58673 5.66759 5.80881 6.14884 6.18556 6.21046 6.25113 6.78744 7.08702 7.35193 7.67158 8.88623 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029363 B = 0.003534 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.349399 B = 7921.521624 C = 8215.847229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.067 3.933 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.159 3.841 7 H 0.070 0.930 8 C 0.079 3.921 9 H 0.096 0.904 10 C -0.111 4.111 11 C 0.103 3.897 12 N -0.622 5.622 13 C 0.716 3.284 14 O -0.629 6.629 15 N -0.736 5.736 16 C 0.164 3.836 17 C 0.026 3.974 18 C -0.547 4.547 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.927 5.927 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.266 1.266 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.401 0.599 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.005 0.995 43 H 0.007 0.993 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 8.916 -16.080 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.282 5.282 3 C -0.061 4.061 4 C -0.142 4.142 5 C -0.177 4.177 6 C 0.055 3.945 7 H 0.088 0.912 8 C -0.029 4.029 9 H 0.114 0.886 10 C -0.149 4.149 11 C -0.019 4.019 12 N -0.359 5.359 13 C 0.418 3.582 14 O -0.511 6.511 15 N -0.390 5.390 16 C 0.040 3.960 17 C -0.011 4.011 18 C -0.585 4.585 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.236 0.764 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.026 0.974 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.533 9.142 -15.689 24.557 hybrid contribution 0.492 -0.091 0.346 0.608 sum -16.041 9.051 -15.343 23.972 Atomic orbital electron populations 1.22418 0.85574 1.03153 1.00896 1.61491 1.08760 1.13366 1.44597 1.21992 0.94229 0.89092 1.00784 1.21402 0.95526 0.99523 0.97735 1.21593 1.02204 0.94807 0.99080 1.21155 0.94517 0.90703 0.88169 0.91234 1.22944 0.92130 0.94354 0.93520 0.88620 1.22927 0.98603 0.94297 0.99057 1.22142 0.86807 0.92331 1.00654 1.47275 1.16038 1.37005 1.35583 1.15637 0.81708 0.81351 0.79504 1.90759 1.46349 1.41817 1.72197 1.45276 1.21739 1.37302 1.34696 1.21024 0.83983 0.98878 0.92129 1.19103 0.96603 0.92969 0.92467 1.21454 1.03271 1.17318 1.16469 0.92328 1.25880 1.00479 0.94644 0.98115 1.70068 1.35839 1.19958 1.30742 0.85424 0.79188 0.77613 0.78701 1.19742 1.20371 1.19054 0.90109 0.94606 0.91469 0.93436 0.90545 0.95014 0.91423 0.91249 0.89902 0.87862 0.88426 0.91311 0.92118 0.76408 0.93933 0.94184 0.97620 0.97431 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.40 127.69 1.20 1.53 16 2 N -0.56 -9.94 4.29 -889.70 -3.82 -13.75 16 3 C 0.07 1.25 5.48 86.47 0.47 1.72 16 4 C -0.10 -2.64 6.09 30.69 0.19 -2.46 16 5 C -0.14 -3.59 4.95 30.08 0.15 -3.44 16 6 C 0.16 3.71 2.97 44.81 0.13 3.84 16 7 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 8 C 0.08 1.27 3.07 46.29 0.14 1.42 16 9 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 10 C -0.11 -1.51 6.37 32.10 0.20 -1.30 16 11 C 0.10 2.19 6.05 86.71 0.52 2.72 16 12 N -0.62 -17.86 3.17 -811.44 -2.58 -20.44 16 13 C 0.72 27.48 7.96 179.05 1.43 28.90 16 14 O -0.63 -28.34 13.83 -3.99 -0.06 -28.40 16 15 N -0.74 -28.92 5.52 -478.53 -2.64 -31.56 16 16 C 0.16 7.63 5.61 86.38 0.48 8.12 16 17 C 0.03 1.38 5.09 29.85 0.15 1.53 16 18 C -0.55 -31.51 9.11 25.60 0.23 -31.27 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.43 5.46 84.65 0.46 0.89 16 21 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 22 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H 0.08 0.81 6.19 -2.39 -0.01 0.80 16 27 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 0.83 8.03 -2.38 -0.02 0.81 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 1.36 8.01 -2.39 -0.02 1.34 16 31 H 0.03 1.05 7.76 -2.38 -0.02 1.04 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.39 5.50 -2.39 -0.01 2.38 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.10 6.03 -2.38 -0.01 1.09 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.40 14.10 7.48 -92.71 -0.69 13.40 16 40 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -70.55 339.48 -0.72 -71.27 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.28 Total: 19.21 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.77 Total: 12.20 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -8.75 Total: -120.75 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.06 Total: -28.40 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.55 -0.72 -71.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130271.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.826 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds