Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46832 * 110.99950 * 2 1 4 4 C 1.53185 * 109.45660 * 172.30691 * 3 2 1 5 5 C 1.52916 * 108.99235 * 57.08019 * 4 3 2 6 6 C 1.53142 * 113.52942 * 175.28730 * 5 4 3 7 7 C 1.53854 * 83.15486 * 218.97974 * 6 5 4 8 8 N 1.46720 * 113.47799 * 76.35847 * 5 4 3 9 9 C 1.34775 * 136.10424 * 321.91858 * 8 5 4 10 10 O 1.21582 * 120.00249 * 354.38918 * 9 8 5 11 11 N 1.34775 * 119.99577 * 174.39299 * 9 8 5 12 12 C 1.46507 * 119.99605 * 179.72219 * 11 9 8 13 13 C 1.53002 * 109.46898 * 180.27381 * 12 11 9 14 14 C 1.50695 * 109.47036 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00328 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00116 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00246 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47134 * 89.99408 * 18 16 14 20 20 H 1.48494 * 109.47530 * 209.99993 * 18 16 14 21 21 H 1.48502 * 109.47031 * 330.00105 * 18 16 14 22 22 C 1.52917 * 112.42769 * 305.87318 * 5 4 3 23 23 C 1.46822 * 110.99758 * 235.48271 * 2 1 3 24 24 H 1.09004 * 109.46490 * 59.99895 * 1 2 3 25 25 H 1.08996 * 109.46833 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46698 * 300.00494 * 1 2 3 27 27 H 1.08995 * 109.47745 * 52.30987 * 3 2 1 28 28 H 1.09008 * 109.47217 * 292.29868 * 3 2 1 29 29 H 1.09003 * 109.54981 * 297.23618 * 4 3 2 30 30 H 1.08992 * 109.55544 * 176.93686 * 4 3 2 31 31 H 1.09004 * 114.22276 * 332.73617 * 6 5 4 32 32 H 1.09001 * 114.22244 * 105.40840 * 6 5 4 33 33 H 1.09008 * 113.44744 * 271.22834 * 7 6 5 34 34 H 1.08997 * 113.55620 * 140.73902 * 7 6 5 35 35 H 0.97000 * 120.00387 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47205 * 300.27594 * 12 11 9 37 37 H 1.09000 * 109.46869 * 60.27682 * 12 11 9 38 38 H 1.09001 * 109.47214 * 299.99838 * 13 12 11 39 39 H 1.09000 * 109.47115 * 60.00451 * 13 12 11 40 40 H 0.96998 * 120.00531 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.54903 * 173.97068 * 22 5 4 42 42 H 1.09001 * 109.55147 * 294.26225 * 22 5 4 43 43 H 1.09000 * 109.47263 * 307.68456 * 23 2 1 44 44 H 1.09000 * 109.47393 * 67.68653 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5144 1.3342 0.1934 5 6 4.1363 0.4794 -0.9116 6 6 5.6674 0.4652 -0.8850 7 6 5.5110 0.5123 -2.4149 8 7 4.2070 1.1617 -2.2086 9 6 3.4214 2.0062 -2.9058 10 8 2.3129 2.2865 -2.4925 11 7 3.8647 2.5399 -4.0613 12 6 3.0084 3.4532 -4.8223 13 6 3.7422 3.9062 -6.0861 14 6 2.8617 4.8461 -6.8686 15 1 1.8770 5.0951 -6.5015 16 6 3.3127 5.3873 -8.0537 17 7 4.5116 5.0838 -8.5011 18 14 2.2210 6.5518 -9.0240 19 1 2.4682 7.9473 -8.5804 20 1 2.5305 6.4302 -10.4713 21 1 0.7962 6.2037 -8.7916 22 6 3.5144 -0.9154 -0.9900 23 6 1.9952 -0.7767 -1.1294 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5390 1.9352 0.8132 28 1 1.7615 1.8498 -0.9509 29 1 3.7481 0.8999 1.1654 30 1 3.9136 2.3470 0.1393 31 1 6.1155 1.3586 -0.4499 32 1 6.0996 -0.4614 -0.5072 33 1 5.4369 -0.4737 -2.8738 34 1 6.2418 1.1533 -2.9079 35 1 4.7492 2.3166 -4.3909 36 1 2.0876 2.9407 -5.1007 37 1 2.7694 4.3224 -4.2096 38 1 4.6630 4.4188 -5.8076 39 1 3.9812 3.0370 -6.6988 40 1 4.8291 5.4649 -9.3346 41 1 3.9133 -1.4445 -1.8555 42 1 3.7482 -1.4706 -0.0816 43 1 1.5389 -1.7666 -1.1336 44 1 1.7612 -0.2649 -2.0629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894131303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = 13.719883 kcal Electronic energy + Delta-G solvation = -23085.305096 eV Core-core repulsion = 19845.951487 eV Total energy + Delta-G solvation = -3239.353609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21504 -38.37557 -37.20760 -34.78432 -32.88751 -31.70566 -30.93814 -30.09347 -28.67016 -26.06175 -24.69785 -23.72858 -22.93373 -21.91946 -20.87273 -20.59128 -18.51493 -17.32072 -16.50215 -15.96122 -15.76268 -15.29801 -15.06542 -14.63277 -14.44722 -14.40091 -14.06496 -13.75572 -13.32271 -13.04828 -12.53991 -12.50223 -12.48868 -12.28545 -12.13692 -11.67473 -11.46804 -11.36879 -11.20081 -11.04592 -11.00541 -10.69427 -10.62832 -10.32993 -10.12119 -9.67306 -9.48925 -9.24653 -8.74176 -8.46401 -8.18078 -7.98419 -6.10007 -4.12761 2.71261 3.28986 3.35096 3.39505 3.53155 4.03452 4.13939 4.30630 4.45074 4.66975 4.75360 4.84797 5.08095 5.20208 5.22465 5.27134 5.37351 5.43426 5.46425 5.52286 5.57749 5.59645 5.71349 5.78908 5.82374 5.88259 5.94044 6.08713 6.13267 6.18490 6.37581 6.39161 6.48089 6.76149 7.11894 7.14419 7.24136 7.48490 7.61956 7.62457 7.89068 8.25949 8.42267 8.92497 9.07403 9.52046 11.01689 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.003705 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.964677 B = 7556.088998 C = 8267.722055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.543 5.543 3 C 0.006 3.994 4 C -0.105 4.105 5 C 0.180 3.820 6 C -0.146 4.146 7 C 0.098 3.902 8 N -0.661 5.661 9 C 0.730 3.270 10 O -0.585 6.585 11 N -0.735 5.735 12 C 0.142 3.858 13 C 0.014 3.986 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.111 4.111 23 C 0.058 3.942 24 H 0.026 0.974 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -13.169 16.942 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.268 5.268 3 C -0.120 4.120 4 C -0.143 4.143 5 C 0.094 3.906 6 C -0.184 4.184 7 C -0.025 4.025 8 N -0.401 5.401 9 C 0.434 3.566 10 O -0.465 6.465 11 N -0.387 5.387 12 C 0.019 3.981 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.150 4.150 23 C -0.070 4.070 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.225 0.775 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.457 -12.941 17.341 21.687 hybrid contribution -0.351 0.863 -1.575 1.830 sum 1.106 -12.077 15.767 19.892 Atomic orbital electron populations 1.22267 0.87830 1.01251 1.00673 1.61915 1.07232 1.14840 1.42826 1.23062 0.94074 0.89232 1.05638 1.21650 0.95974 0.99354 0.97368 1.21598 0.94025 0.91893 0.83056 1.23492 0.95324 1.03468 0.96139 1.22938 0.85131 0.97701 0.96752 1.48907 1.22166 1.47401 1.21670 1.15429 0.82765 0.78416 0.79979 1.90515 1.19688 1.66850 1.69442 1.45506 1.20494 1.50118 1.22576 1.21591 0.93029 0.90423 0.93055 1.19317 0.96131 0.96689 0.90257 1.21042 1.01660 1.27158 1.06070 0.92252 1.24991 0.95180 0.96658 0.97428 1.69954 1.17463 1.44243 1.21682 0.86511 0.80888 0.81114 0.79037 1.20541 1.21161 1.19726 1.21779 0.95447 0.95198 1.02584 1.21970 0.94564 0.97677 0.92809 0.95492 0.92009 0.91797 0.92305 0.86920 0.90811 0.91323 0.88672 0.89400 0.90174 0.90582 0.77478 0.92898 0.92794 0.96011 0.96049 0.92853 0.91076 0.89881 0.91383 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.58 60.07 0.58 0.91 16 2 N -0.54 -7.13 4.87 -242.79 -1.18 -8.31 16 3 C 0.01 0.09 5.33 -3.77 -0.02 0.07 16 4 C -0.11 -1.29 5.34 -26.68 -0.14 -1.43 16 5 C 0.18 2.02 0.93 -137.34 -0.13 1.89 16 6 C -0.15 -1.20 7.63 -26.21 -0.20 -1.40 16 7 C 0.10 0.95 7.95 -8.88 -0.07 0.88 16 8 N -0.66 -9.00 3.37 -177.10 -0.60 -9.59 16 9 C 0.73 13.07 8.66 -86.92 -0.75 12.32 16 10 O -0.58 -12.11 12.69 5.29 0.07 -12.05 16 11 N -0.73 -13.47 5.56 -65.22 -0.36 -13.84 16 12 C 0.14 3.09 5.61 -4.04 -0.02 3.06 16 13 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 14 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.11 -1.15 5.39 -26.68 -0.14 -1.29 16 23 C 0.06 0.73 5.48 -3.77 -0.02 0.71 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.63 8.07 -51.93 -0.42 0.22 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.11 2.03 3.77 -54.16 -0.20 1.83 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.08 0.67 7.29 -51.92 -0.38 0.29 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 6.44 8.21 -40.82 -0.33 6.10 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.07 0.67 7.03 -51.93 -0.36 0.30 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 44 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -31.59 344.22 -10.21 -41.80 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.56 Total: 3.20 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.48 Total: 2.64 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -1.40 Total: -57.23 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.59 -10.21 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894131303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.515 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds