Wall clock time and date at job start Tue Mar 31 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46832 * 110.99950 * 2 1 4 4 C 1.53185 * 109.45660 * 172.30691 * 3 2 1 5 5 C 1.52916 * 108.99235 * 57.08019 * 4 3 2 6 6 C 1.53142 * 113.52942 * 175.28730 * 5 4 3 7 7 C 1.53854 * 83.15486 * 218.97974 * 6 5 4 8 8 N 1.46720 * 113.47799 * 76.35847 * 5 4 3 9 9 C 1.34775 * 136.10424 * 321.91858 * 8 5 4 10 10 O 1.21582 * 120.00249 * 354.38918 * 9 8 5 11 11 N 1.34775 * 119.99577 * 174.39299 * 9 8 5 12 12 C 1.46507 * 119.99605 * 179.72219 * 11 9 8 13 13 C 1.53002 * 109.46898 * 180.27381 * 12 11 9 14 14 C 1.50695 * 109.47036 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00328 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00116 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00246 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47134 * 89.99408 * 18 16 14 20 20 H 1.48494 * 109.47530 * 209.99993 * 18 16 14 21 21 H 1.48502 * 109.47031 * 330.00105 * 18 16 14 22 22 C 1.52917 * 112.42769 * 305.87318 * 5 4 3 23 23 C 1.46822 * 110.99758 * 235.48271 * 2 1 3 24 24 H 1.09004 * 109.46490 * 59.99895 * 1 2 3 25 25 H 1.08996 * 109.46833 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46698 * 300.00494 * 1 2 3 27 27 H 1.08995 * 109.47745 * 52.30987 * 3 2 1 28 28 H 1.09008 * 109.47217 * 292.29868 * 3 2 1 29 29 H 1.09003 * 109.54981 * 297.23618 * 4 3 2 30 30 H 1.08992 * 109.55544 * 176.93686 * 4 3 2 31 31 H 1.09004 * 114.22276 * 332.73617 * 6 5 4 32 32 H 1.09001 * 114.22244 * 105.40840 * 6 5 4 33 33 H 1.09008 * 113.44744 * 271.22834 * 7 6 5 34 34 H 1.08997 * 113.55620 * 140.73902 * 7 6 5 35 35 H 0.97000 * 120.00387 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47205 * 300.27594 * 12 11 9 37 37 H 1.09000 * 109.46869 * 60.27682 * 12 11 9 38 38 H 1.09001 * 109.47214 * 299.99838 * 13 12 11 39 39 H 1.09000 * 109.47115 * 60.00451 * 13 12 11 40 40 H 0.96998 * 120.00531 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.54903 * 173.97068 * 22 5 4 42 42 H 1.09001 * 109.55147 * 294.26225 * 22 5 4 43 43 H 1.09000 * 109.47263 * 307.68456 * 23 2 1 44 44 H 1.09000 * 109.47393 * 67.68653 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5144 1.3342 0.1934 5 6 4.1363 0.4794 -0.9116 6 6 5.6674 0.4652 -0.8850 7 6 5.5110 0.5123 -2.4149 8 7 4.2070 1.1617 -2.2086 9 6 3.4214 2.0062 -2.9058 10 8 2.3129 2.2865 -2.4925 11 7 3.8647 2.5399 -4.0613 12 6 3.0084 3.4532 -4.8223 13 6 3.7422 3.9062 -6.0861 14 6 2.8617 4.8461 -6.8686 15 1 1.8770 5.0951 -6.5015 16 6 3.3127 5.3873 -8.0537 17 7 4.5116 5.0838 -8.5011 18 14 2.2210 6.5518 -9.0240 19 1 2.4682 7.9473 -8.5804 20 1 2.5305 6.4302 -10.4713 21 1 0.7962 6.2037 -8.7916 22 6 3.5144 -0.9154 -0.9900 23 6 1.9952 -0.7767 -1.1294 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.5390 1.9352 0.8132 28 1 1.7615 1.8498 -0.9509 29 1 3.7481 0.8999 1.1654 30 1 3.9136 2.3470 0.1393 31 1 6.1155 1.3586 -0.4499 32 1 6.0996 -0.4614 -0.5072 33 1 5.4369 -0.4737 -2.8738 34 1 6.2418 1.1533 -2.9079 35 1 4.7492 2.3166 -4.3909 36 1 2.0876 2.9407 -5.1007 37 1 2.7694 4.3224 -4.2096 38 1 4.6630 4.4188 -5.8076 39 1 3.9812 3.0370 -6.6988 40 1 4.8291 5.4649 -9.3346 41 1 3.9133 -1.4445 -1.8555 42 1 3.7482 -1.4706 -0.0816 43 1 1.5389 -1.7666 -1.1336 44 1 1.7612 -0.2649 -2.0629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894131303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:44 Heat of formation + Delta-G solvation = -8.600879 kcal Electronic energy + Delta-G solvation = -23086.272997 eV Core-core repulsion = 19845.951487 eV Total energy + Delta-G solvation = -3240.321510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21696 -39.72442 -38.22073 -36.53319 -34.82956 -32.85722 -31.91501 -31.57785 -30.03376 -27.01344 -26.63260 -24.63904 -23.88165 -23.35007 -22.46835 -21.69643 -19.83591 -18.57216 -18.28944 -17.22782 -16.97144 -16.54625 -16.41891 -16.07742 -15.83101 -15.61739 -15.24461 -15.06476 -14.69537 -14.31633 -14.14289 -13.54280 -13.46822 -13.41247 -13.25020 -13.01785 -12.95748 -12.59298 -12.55219 -12.36305 -12.29599 -12.23988 -11.97359 -11.64630 -11.62212 -11.46075 -11.05785 -10.69497 -10.62678 -10.14883 -9.43615 -9.12311 -8.26446 -6.37199 1.39674 1.40662 1.50823 1.55986 2.17511 2.38703 2.98325 3.08201 3.09361 3.41852 3.78314 3.84341 3.99313 4.21954 4.27717 4.37085 4.45828 4.47318 4.50178 4.55027 4.56687 4.60178 4.66198 4.78307 4.81177 4.82725 4.91706 4.98304 4.99501 5.01711 5.12679 5.16985 5.27943 5.37906 5.41650 5.54738 5.66767 5.80986 6.10274 6.13386 6.15437 6.35919 6.75639 7.10595 7.32354 7.70795 8.85607 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.003705 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.964677 B = 7556.088998 C = 8267.722055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.538 5.538 3 C 0.005 3.995 4 C -0.102 4.102 5 C 0.168 3.832 6 C -0.121 4.121 7 C 0.092 3.908 8 N -0.665 5.665 9 C 0.722 3.278 10 O -0.620 6.620 11 N -0.734 5.734 12 C 0.165 3.835 13 C 0.026 3.974 14 C -0.548 4.548 15 H 0.057 0.943 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.105 4.105 23 C 0.056 3.944 24 H 0.001 0.999 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.266 0.734 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.085 0.915 44 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -14.649 18.079 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.262 5.262 3 C -0.122 4.122 4 C -0.140 4.140 5 C 0.084 3.916 6 C -0.159 4.159 7 C -0.030 4.030 8 N -0.404 5.404 9 C 0.426 3.574 10 O -0.503 6.503 11 N -0.388 5.388 12 C 0.041 3.959 13 C -0.011 4.011 14 C -0.586 4.586 15 H 0.075 0.925 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.144 4.144 23 C -0.072 4.072 24 H 0.020 0.980 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.593 -14.466 18.513 23.638 hybrid contribution -0.698 1.269 -1.864 2.361 sum 1.895 -13.197 16.649 21.329 Atomic orbital electron populations 1.22339 0.87526 1.02321 0.99913 1.62019 1.07626 1.13906 1.42639 1.22936 0.96037 0.89756 1.03489 1.21636 0.94189 0.99165 0.99058 1.22000 0.96505 0.91819 0.81310 1.23449 0.92358 1.05507 0.94599 1.23297 0.82952 0.98272 0.98476 1.49061 1.22957 1.46246 1.22172 1.15594 0.82870 0.79169 0.79766 1.90543 1.21423 1.68140 1.70174 1.45210 1.20499 1.50070 1.22983 1.21013 0.92535 0.90467 0.91869 1.19100 0.95403 0.95489 0.91113 1.21437 1.02092 1.28085 1.06992 0.92452 1.25864 0.96574 0.98205 0.98375 1.70054 1.18985 1.45245 1.22252 0.85438 0.79031 0.78937 0.77602 1.19668 1.20322 1.19173 1.21813 0.93255 0.94828 1.04486 1.22047 0.96826 0.97666 0.90657 0.98019 0.89985 0.90838 0.92520 0.90600 0.88540 0.92729 0.88402 0.85636 0.88194 0.90023 0.76373 0.94301 0.94068 0.97443 0.97513 0.92468 0.89680 0.87248 0.89713 0.98379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.58 127.69 1.22 1.88 16 2 N -0.54 -13.73 4.87 -922.05 -4.49 -18.22 16 3 C 0.01 0.15 5.33 86.38 0.46 0.61 16 4 C -0.10 -2.37 5.34 30.63 0.16 -2.21 16 5 C 0.17 3.39 0.93 -0.09 0.00 3.39 16 6 C -0.12 -1.50 7.63 30.93 0.24 -1.26 16 7 C 0.09 1.51 7.95 82.90 0.66 2.17 16 8 N -0.67 -17.52 3.37 -832.47 -2.80 -20.32 16 9 C 0.72 26.57 8.66 179.06 1.55 28.12 16 10 O -0.62 -27.11 12.69 -3.97 -0.05 -27.16 16 11 N -0.73 -27.74 5.56 -478.53 -2.66 -30.40 16 12 C 0.17 7.53 5.61 86.38 0.48 8.02 16 13 C 0.03 1.38 5.09 29.85 0.15 1.53 16 14 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.01 0.49 5.46 84.65 0.46 0.96 16 17 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 18 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 C -0.11 -1.86 5.39 30.63 0.17 -1.69 16 23 C 0.06 1.37 5.48 86.38 0.47 1.84 16 24 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 25 H 0.08 1.59 8.07 -2.39 -0.02 1.58 16 26 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 28 H 0.08 2.90 3.77 -37.79 -0.14 2.76 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.10 1.22 8.12 -2.38 -0.02 1.20 16 32 H 0.13 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.10 1.30 7.29 -2.38 -0.02 1.28 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.40 13.38 8.21 -92.71 -0.76 12.62 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 41 H 0.08 1.29 7.03 -2.38 -0.02 1.27 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.73 8.05 -2.39 -0.02 1.72 16 44 H 0.00 -0.07 7.83 -2.39 -0.02 -0.09 16 Total: -1.00 -71.13 344.22 -1.35 -72.48 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.08 Total: 19.64 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.26 Total: 12.30 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -9.67 Total: -123.42 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.05 Total: -27.16 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -71.13 -1.35 -72.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894131303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.875 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds