Wall clock time and date at job start Tue Mar 31 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99978 * 2 1 4 4 H 1.48494 * 109.47315 * 240.00233 * 3 2 1 5 5 H 1.48500 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46780 * 119.99858 * 3 2 1 7 7 C 1.37874 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00008 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99938 * 179.97438 * 10 9 7 12 12 O 1.21581 * 119.99965 * 5.08155 * 11 10 9 13 13 N 1.34783 * 120.00221 * 185.06827 * 11 10 9 14 14 C 1.46924 * 120.63133 * 174.96543 * 13 11 10 15 15 C 1.53188 * 108.77588 * 233.63305 * 14 13 11 16 16 C 1.53045 * 109.31551 * 305.36742 * 15 14 13 17 17 N 1.46901 * 109.46169 * 181.38578 * 16 15 14 18 18 C 1.46897 * 110.99791 * 154.97473 * 17 16 15 19 19 C 1.53782 * 113.61012 * 254.13210 * 18 17 16 20 20 C 1.53954 * 87.01904 * 220.05042 * 19 18 17 21 21 C 1.53783 * 87.11247 * 25.36517 * 20 19 18 22 22 C 1.53046 * 109.52608 * 61.36944 * 16 15 14 23 23 C 1.46928 * 120.62807 * 354.99312 * 13 11 10 24 24 H 0.96997 * 120.00022 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47167 * 60.00179 * 9 7 2 26 26 H 1.09004 * 109.47268 * 299.99683 * 9 7 2 27 27 H 0.97000 * 120.00646 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.58582 * 113.84604 * 14 13 11 29 29 H 1.09002 * 109.70232 * 353.49609 * 14 13 11 30 30 H 1.08997 * 109.50105 * 185.41658 * 15 14 13 31 31 H 1.09004 * 109.49857 * 65.31734 * 15 14 13 32 32 H 1.08995 * 109.46017 * 301.36140 * 16 15 14 33 33 H 1.00900 * 110.99725 * 31.01591 * 17 16 15 34 34 H 1.08997 * 112.85512 * 25.32927 * 18 17 16 35 35 H 1.08998 * 113.61724 * 334.57231 * 19 18 17 36 36 H 1.08999 * 113.61393 * 105.47706 * 19 18 17 37 37 H 1.08997 * 113.53635 * 270.81201 * 20 19 18 38 38 H 1.08996 * 113.66445 * 139.93564 * 20 19 18 39 39 H 1.09002 * 113.61240 * 220.08915 * 21 20 19 40 40 H 1.08995 * 113.68730 * 89.19568 * 21 20 19 41 41 H 1.09001 * 109.49762 * 58.58270 * 22 16 15 42 42 H 1.08993 * 109.49659 * 178.67500 * 22 16 15 43 43 H 1.09000 * 109.58811 * 246.15464 * 23 13 11 44 44 H 1.09006 * 109.58709 * 6.43749 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5622 -5.1069 -0.0928 13 7 2.6253 -5.9063 0.1031 14 6 2.1452 -7.2903 0.2158 15 6 2.7780 -7.9323 1.4544 16 6 4.3004 -7.7999 1.3713 17 7 4.9123 -8.4439 2.5413 18 6 6.2875 -8.8695 2.2488 19 6 6.4357 -10.3889 2.0637 20 6 7.7556 -10.2746 2.8480 21 6 7.1675 -9.0130 3.5018 22 6 4.6844 -6.3186 1.3456 23 6 4.0735 -5.6584 0.1055 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4355 -0.0002 28 1 2.4332 -7.8505 -0.6737 29 1 1.0598 -7.2958 0.3155 30 1 2.5064 -8.9871 1.4964 31 1 2.4173 -7.4273 2.3505 32 1 4.6579 -8.2835 0.4623 33 1 4.3532 -9.2210 2.8599 34 1 6.7514 -8.2855 1.4540 35 1 5.6701 -10.9684 2.5795 36 1 6.5689 -10.6913 1.0250 37 1 8.6214 -10.0760 2.2164 38 1 7.9204 -11.0931 3.5487 39 1 7.8905 -8.2062 3.6223 40 1 6.6022 -9.2143 4.4117 41 1 4.3055 -5.8289 2.2426 42 1 5.7697 -6.2247 1.3101 43 1 4.5188 -6.0855 -0.7930 44 1 4.2605 -4.5848 0.1311 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894486550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:14 Heat of formation + Delta-G solvation = -10.962717 kcal Electronic energy + Delta-G solvation = -22246.740003 eV Core-core repulsion = 19006.316076 eV Total energy + Delta-G solvation = -3240.423927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06235 -39.20960 -37.25373 -34.22602 -34.14155 -32.36195 -30.93890 -30.21108 -27.10296 -25.90816 -24.97186 -23.61894 -23.18699 -22.10467 -20.63808 -19.81446 -19.03152 -18.03372 -16.32267 -16.01870 -15.92131 -15.58467 -15.07518 -14.99744 -14.65296 -14.14080 -13.95978 -13.50881 -13.24510 -13.02253 -12.83212 -12.76601 -12.62526 -12.24303 -11.97871 -11.86687 -11.70463 -11.24538 -11.21770 -11.02698 -10.93106 -10.84154 -10.72788 -10.61647 -10.34549 -10.24589 -9.35709 -9.30282 -8.69413 -8.57936 -8.37471 -7.68130 -6.11973 -4.18507 3.22454 3.28106 3.32997 3.35306 3.78377 4.00714 4.28384 4.34000 4.36412 4.55423 4.59074 4.66580 4.71115 4.91479 5.11223 5.13849 5.20854 5.23911 5.30357 5.35486 5.42560 5.48860 5.53510 5.59709 5.62073 5.71206 5.74254 5.86116 5.86617 6.00510 6.05541 6.10469 6.30258 6.82935 6.90010 7.17019 7.18264 7.55338 7.58341 7.61593 7.90135 8.06039 8.79386 8.94523 9.36203 9.51458 10.98284 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.003169 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.921355 B = 8832.949504 C = 9656.785785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.698 3.302 12 O -0.600 6.600 13 N -0.638 5.638 14 C 0.135 3.865 15 C -0.136 4.136 16 C 0.091 3.909 17 N -0.676 5.676 18 C 0.068 3.932 19 C -0.171 4.171 20 C -0.143 4.143 21 C -0.130 4.130 22 C -0.121 4.121 23 C 0.113 3.887 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.023 0.977 27 H 0.385 0.615 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.342 0.658 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.069 -20.188 3.944 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.384 5.384 11 C 0.399 3.601 12 O -0.479 6.479 13 N -0.378 5.378 14 C 0.011 3.989 15 C -0.175 4.175 16 C -0.019 4.019 17 N -0.306 5.306 18 C -0.043 4.043 19 C -0.210 4.210 20 C -0.181 4.181 21 C -0.168 4.168 22 C -0.160 4.160 23 C -0.011 4.011 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.220 0.780 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.162 0.838 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.151 -19.549 4.173 24.491 hybrid contribution 0.853 0.191 -0.535 1.026 sum 15.005 -19.358 3.637 24.760 Atomic orbital electron populations 1.69969 1.06081 1.27341 1.48909 1.24939 0.94909 0.99358 0.94789 0.86477 0.79409 0.82368 0.78653 1.20103 1.21088 1.20079 1.21181 0.93172 0.90478 1.53167 0.92091 1.18974 0.87821 0.81107 0.97563 1.45881 1.10806 1.04448 1.77228 1.16058 0.84773 0.81086 0.78187 1.90851 1.14467 1.83877 1.58693 1.47285 1.05211 1.05938 1.79324 1.21244 1.00790 0.80840 0.96025 1.22141 0.94494 1.00748 1.00124 1.21493 0.93821 0.95073 0.91483 1.60439 1.02445 1.33677 1.34029 1.23093 0.89863 0.93396 0.97910 1.23697 0.98573 0.98155 1.00622 1.22747 0.96940 0.98751 0.99646 1.23035 0.98395 0.97334 0.98038 1.21929 1.00322 0.94834 0.98901 1.21565 0.80980 1.01045 0.97534 0.92427 0.95693 0.95864 0.77972 0.92533 0.88735 0.91265 0.90493 0.93760 0.83829 0.88608 0.90088 0.91730 0.90282 0.91436 0.91447 0.89778 0.90554 0.91255 0.92088 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.27 7.31 5.43 -5.19 -0.03 7.28 16 10 N -0.73 -16.28 5.46 -66.41 -0.36 -16.64 16 11 C 0.70 15.08 8.30 -86.91 -0.72 14.36 16 12 O -0.60 -15.42 15.79 5.29 0.08 -15.33 16 13 N -0.64 -10.23 2.97 -178.50 -0.53 -10.76 16 14 C 0.14 1.82 6.41 -3.71 -0.02 1.79 16 15 C -0.14 -1.44 5.36 -26.61 -0.14 -1.59 16 16 C 0.09 0.88 2.32 -67.67 -0.16 0.72 16 17 N -0.68 -5.93 6.42 -98.84 -0.63 -6.57 16 18 C 0.07 0.52 3.85 -66.90 -0.26 0.26 16 19 C -0.17 -1.12 7.72 -25.83 -0.20 -1.32 16 20 C -0.14 -0.89 8.09 -25.83 -0.21 -1.10 16 21 C -0.13 -0.94 7.88 -25.92 -0.20 -1.15 16 22 C -0.12 -1.32 5.58 -26.61 -0.15 -1.47 16 23 C 0.11 1.41 6.43 -3.71 -0.02 1.39 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.39 7.45 5.78 -40.82 -0.24 7.22 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 30 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.42 7.85 -51.93 -0.41 0.01 16 33 H 0.34 2.70 7.81 -39.29 -0.31 2.40 16 34 H 0.10 0.76 7.48 -51.93 -0.39 0.37 16 35 H 0.08 0.51 7.83 -51.93 -0.41 0.10 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.67 7.69 -51.93 -0.40 0.27 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.07 5.56 -51.93 -0.29 0.78 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -32.50 347.49 -10.43 -42.93 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.40 Total: 5.23 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.53 Total: 5.57 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.79 Total: -59.69 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.08 Total: -15.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.50 -10.43 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.966 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds