Wall clock time and date at job start Tue Mar 31 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47479 * 110.99647 * 2 1 4 4 C 1.53517 * 87.93077 * 138.70292 * 3 2 1 5 5 C 1.47481 * 110.99929 * 95.96996 * 2 1 3 6 6 H 1.09003 * 113.47922 * 336.12666 * 5 2 1 7 7 C 1.52994 * 113.47323 * 106.53048 * 5 2 1 8 8 N 1.46501 * 109.47495 * 285.49308 * 7 5 2 9 9 C 1.34780 * 120.00179 * 179.97438 * 8 7 5 10 10 O 1.21586 * 119.99854 * 4.99167 * 9 8 7 11 11 N 1.34777 * 119.99806 * 184.98210 * 9 8 7 12 12 C 1.46934 * 120.60288 * 354.75348 * 11 9 8 13 13 C 1.53194 * 108.76804 * 233.57308 * 12 11 9 14 14 C 1.53047 * 109.33950 * 305.41836 * 13 12 11 15 15 C 1.50698 * 109.45589 * 181.37137 * 14 13 12 16 16 H 1.08001 * 120.00619 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99698 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99681 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99704 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47301 * 60.00169 * 19 17 15 21 21 H 1.48500 * 109.46508 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47099 * 299.99497 * 19 17 15 23 23 C 1.53032 * 109.53917 * 61.34898 * 14 13 12 24 24 C 1.46919 * 120.62775 * 174.77323 * 11 9 8 25 25 H 1.09001 * 109.47557 * 324.02847 * 1 2 3 26 26 H 1.08999 * 109.46950 * 84.02531 * 1 2 3 27 27 H 1.08994 * 109.47188 * 204.02603 * 1 2 3 28 28 H 1.09006 * 113.47989 * 253.46472 * 3 2 1 29 29 H 1.09002 * 113.48059 * 23.88033 * 3 2 1 30 30 H 1.09000 * 114.17007 * 220.32591 * 4 3 2 31 31 H 1.08997 * 114.17265 * 87.62307 * 4 3 2 32 32 H 1.08999 * 109.47228 * 165.49603 * 7 5 2 33 33 H 1.09005 * 109.47148 * 45.49846 * 7 5 2 34 34 H 0.97001 * 119.99846 * 0.02562 * 8 7 5 35 35 H 1.09003 * 109.55932 * 113.81121 * 12 11 9 36 36 H 1.08994 * 109.61815 * 353.37754 * 12 11 9 37 37 H 1.08998 * 109.49798 * 185.44722 * 13 12 11 38 38 H 1.08998 * 109.49380 * 65.38224 * 13 12 11 39 39 H 1.08994 * 109.45361 * 301.33868 * 14 13 12 40 40 H 0.96999 * 119.99448 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.50164 * 58.58492 * 23 14 13 42 42 H 1.08998 * 109.50072 * 178.65084 * 23 14 13 43 43 H 1.09006 * 109.58886 * 6.60345 * 24 11 9 44 44 H 1.09003 * 109.70452 * 246.24815 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3769 0.0000 4 6 3.0536 0.9121 1.0125 5 6 1.9975 -0.1432 1.3694 6 1 1.2996 0.1830 2.1406 7 6 2.5886 -1.5255 1.6530 8 7 1.5039 -2.4967 1.8152 9 6 1.7889 -3.7886 2.0731 10 8 2.9402 -4.1313 2.2611 11 7 0.7976 -4.7004 2.1227 12 6 -0.6074 -4.2847 2.0119 13 6 -1.3825 -4.8435 3.2093 14 6 -1.1784 -6.3585 3.2829 15 6 -1.9670 -6.9156 4.4399 16 1 -2.5545 -6.2555 5.0609 17 6 -1.9376 -8.2681 4.7066 18 7 -1.2218 -9.0719 3.9508 19 14 -2.9146 -8.9587 6.1412 20 1 -4.3566 -8.6627 5.9463 21 1 -2.7167 -10.4287 6.2127 22 1 -2.4472 -8.3337 7.4047 23 6 0.3073 -6.6656 3.4835 24 6 1.1016 -6.1282 2.2889 25 1 -0.3634 0.8317 0.6036 26 1 -0.3633 0.1070 -1.0221 27 1 -0.3633 -0.9386 0.4184 28 1 2.4187 1.6804 -0.9585 29 1 1.2996 2.1099 0.4047 30 1 3.2549 1.6292 1.8084 31 1 3.9571 0.5040 0.5594 32 1 3.1811 -1.4868 2.5671 33 1 3.2245 -1.8266 0.8204 34 1 0.5805 -2.2102 1.7362 35 1 -1.0318 -4.6757 1.0872 36 1 -0.6682 -3.1965 2.0129 37 1 -2.4436 -4.6247 3.0899 38 1 -1.0169 -4.3822 4.1267 39 1 -1.5218 -6.8165 2.3554 40 1 -1.2015 -10.0234 4.1381 41 1 0.6576 -6.1871 4.3981 42 1 0.4490 -7.7437 3.5598 43 1 2.1685 -6.2558 2.4722 44 1 0.8182 -6.6716 1.3875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925414579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:02 Heat of formation + Delta-G solvation = 8.045542 kcal Electronic energy + Delta-G solvation = -22759.130890 eV Core-core repulsion = 19519.531223 eV Total energy + Delta-G solvation = -3239.599667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.66711 -39.64543 -36.88364 -34.41356 -33.44957 -31.25380 -30.94842 -30.14733 -28.19118 -25.99429 -24.53032 -23.53781 -22.86005 -22.01095 -20.36090 -19.93838 -18.76839 -17.70958 -16.49019 -16.32196 -15.95917 -15.37943 -15.27910 -14.73583 -14.54789 -14.07411 -13.66067 -13.51109 -13.31136 -13.11794 -12.77716 -12.65235 -12.29705 -11.98786 -11.84852 -11.78892 -11.72218 -11.20095 -11.08960 -10.92023 -10.86588 -10.66863 -10.41273 -10.03466 -9.70539 -9.53596 -9.25551 -9.16027 -8.91110 -8.84048 -8.34523 -7.83541 -5.99845 -4.06781 3.04281 3.30998 3.36255 3.38326 3.60345 3.66895 4.07643 4.25374 4.42463 4.48533 4.76669 4.85045 4.95639 4.99025 5.10108 5.29644 5.32310 5.38134 5.43059 5.57999 5.62176 5.70840 5.78295 5.83119 5.91599 6.02480 6.09239 6.31148 6.44776 6.52797 6.64130 6.67725 6.75719 6.84955 7.00903 7.18745 7.28400 7.53386 7.73356 7.95915 8.08884 8.36990 8.42409 8.96194 9.01844 9.58046 11.05455 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034709 B = 0.003440 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.507154 B = 8137.207725 C = 8537.712229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.469 5.469 3 C -0.005 4.005 4 C -0.135 4.135 5 C 0.012 3.988 6 H 0.083 0.917 7 C 0.158 3.842 8 N -0.750 5.750 9 C 0.705 3.295 10 O -0.601 6.601 11 N -0.619 5.619 12 C 0.115 3.885 13 C -0.124 4.124 14 C 0.050 3.950 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.126 3.874 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.391 0.609 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.037 0.963 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 19.373 -7.172 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.191 5.191 3 C -0.133 4.133 4 C -0.173 4.173 5 C -0.098 4.098 6 H 0.101 0.899 7 C 0.033 3.967 8 N -0.409 5.409 9 C 0.407 3.593 10 O -0.480 6.480 11 N -0.355 5.355 12 C -0.008 4.008 13 C -0.162 4.162 14 C 0.032 3.968 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.162 4.162 24 C 0.004 3.996 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.921 18.412 -7.614 20.522 hybrid contribution -1.582 0.292 1.376 2.117 sum 3.338 18.703 -6.238 19.997 Atomic orbital electron populations 1.22930 0.89424 1.01331 1.02563 1.68964 1.09412 1.18796 1.21939 1.23799 0.97339 0.91535 1.00670 1.23143 0.97628 0.97488 0.99053 1.23727 0.97822 0.96094 0.92178 0.89888 1.21068 0.89206 0.84888 1.01555 1.45239 1.09594 1.07428 1.78632 1.15864 0.84893 0.80588 0.78001 1.90858 1.19278 1.79689 1.58225 1.47430 1.04926 1.07540 1.75624 1.21679 0.81707 0.97289 1.00143 1.22018 0.98086 1.00486 0.95617 1.18609 0.92409 0.88416 0.97381 1.21149 1.28113 0.92477 1.13553 0.92845 1.24965 0.95456 0.97138 0.96390 1.69837 1.40237 1.04067 1.38695 0.86679 0.80521 0.77864 0.83037 1.20362 1.21297 1.20357 1.22019 0.96711 1.03493 0.93961 1.21754 1.00765 0.77270 0.99777 0.94467 0.90787 0.91359 0.89519 0.91284 0.90208 0.88313 0.91294 0.91035 0.77278 0.91967 0.92656 0.92227 0.92958 0.95485 0.92886 0.94384 0.87874 0.90546 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.69 60.06 0.58 0.47 16 2 N -0.47 -4.38 6.52 -244.80 -1.60 -5.98 16 3 C 0.00 -0.03 7.70 -7.54 -0.06 -0.09 16 4 C -0.13 -0.94 8.01 -26.20 -0.21 -1.15 16 5 C 0.01 0.10 3.12 -71.44 -0.22 -0.12 16 6 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 7 C 0.16 1.93 5.69 -4.04 -0.02 1.91 16 8 N -0.75 -10.80 5.46 -65.22 -0.36 -11.16 16 9 C 0.70 13.31 8.29 -86.91 -0.72 12.59 16 10 O -0.60 -13.41 15.77 5.29 0.08 -13.32 16 11 N -0.62 -11.70 2.97 -178.49 -0.53 -12.23 16 12 C 0.12 1.90 6.39 -3.71 -0.02 1.88 16 13 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 14 C 0.05 1.21 2.06 -91.73 -0.19 1.02 16 15 C -0.51 -13.81 8.56 -34.44 -0.29 -14.10 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.95 11.30 55.43 0.63 -24.33 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.12 -2.92 5.15 -26.62 -0.14 -3.05 16 24 C 0.13 2.64 6.44 -3.71 -0.02 2.61 16 25 H 0.04 0.26 7.52 -51.93 -0.39 -0.13 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.59 6.86 -51.93 -0.36 0.23 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.41 7.54 -51.93 -0.39 0.02 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.71 8.12 -51.93 -0.42 0.28 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.39 4.87 4.68 -40.82 -0.19 4.68 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.74 5.65 -51.93 -0.29 0.44 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 2.71 6.03 -51.93 -0.31 2.39 16 43 H 0.08 1.64 7.00 -51.93 -0.36 1.28 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -31.03 341.51 -10.53 -41.55 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.32 Total: 3.27 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.56 Total: 1.00 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -1.86 Total: -53.70 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.03 -10.53 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925414579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.600 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds