Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48189 * 111.06866 * 2 1 4 4 C 1.53937 * 86.22112 * 222.54006 * 3 2 1 5 5 C 1.47960 * 110.99820 * 260.71188 * 2 1 3 6 6 H 1.08998 * 113.76203 * 23.15298 * 5 2 1 7 7 C 1.53003 * 113.75779 * 251.89438 * 5 2 1 8 8 N 1.46499 * 109.46802 * 76.31695 * 7 5 2 9 9 C 1.34775 * 119.99917 * 179.97438 * 8 7 5 10 10 O 1.21587 * 119.99571 * 5.06865 * 9 8 7 11 11 N 1.34771 * 120.00156 * 184.79160 * 9 8 7 12 12 C 1.46929 * 120.62987 * 354.96047 * 11 9 8 13 13 C 1.53628 * 108.54341 * 126.36757 * 12 11 9 14 14 C 1.53042 * 109.24108 * 54.85541 * 13 12 11 15 15 C 1.50699 * 109.45704 * 178.48864 * 14 13 12 16 16 H 1.08000 * 120.00157 * 120.06681 * 15 14 13 17 17 C 1.37878 * 120.00140 * 300.06730 * 15 14 13 18 18 N 1.31514 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46729 * 59.99982 * 19 17 15 21 21 H 1.48499 * 109.46960 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47069 * 300.00179 * 19 17 15 23 23 C 1.53042 * 109.53813 * 298.50730 * 14 13 12 24 24 C 1.46922 * 120.63277 * 175.23700 * 11 9 8 25 25 H 1.09002 * 109.46917 * 159.29105 * 1 2 3 26 26 H 1.09000 * 109.46753 * 279.28847 * 1 2 3 27 27 H 1.08993 * 109.47472 * 39.29255 * 1 2 3 28 28 H 1.09004 * 113.82324 * 108.19704 * 3 2 1 29 29 H 1.09001 * 113.76100 * 336.87453 * 3 2 1 30 30 H 1.09006 * 113.73383 * 269.26665 * 4 3 2 31 31 H 1.09007 * 113.73407 * 137.99347 * 4 3 2 32 32 H 1.08994 * 109.47102 * 316.31095 * 7 5 2 33 33 H 1.09005 * 109.46847 * 196.31435 * 7 5 2 34 34 H 0.97001 * 120.00123 * 359.97438 * 8 7 5 35 35 H 1.09001 * 109.58557 * 246.19688 * 12 11 9 36 36 H 1.08997 * 109.58377 * 6.62137 * 12 11 9 37 37 H 1.08995 * 109.63135 * 294.86070 * 13 12 11 38 38 H 1.08997 * 109.42800 * 174.72341 * 13 12 11 39 39 H 1.08999 * 109.45801 * 58.53270 * 14 13 12 40 40 H 0.96998 * 119.99808 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.49702 * 301.41799 * 23 14 13 42 42 H 1.08991 * 109.49448 * 181.31651 * 23 14 13 43 43 H 1.09005 * 109.58558 * 353.37042 * 24 11 9 44 44 H 1.08998 * 109.59229 * 113.80097 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3828 0.0000 4 6 3.0213 0.8813 -1.0385 5 6 1.9992 -0.2229 -1.3632 6 1 1.3003 0.0449 -2.1556 7 6 2.6264 -1.6042 -1.5624 8 7 1.5667 -2.6064 -1.6996 9 6 1.8851 -3.9027 -1.8857 10 8 3.0484 -4.2544 -1.8478 11 7 0.9138 -4.8101 -2.1083 12 6 -0.5020 -4.4226 -2.0419 13 6 -1.1855 -4.8430 -3.3519 14 6 -0.9535 -6.3377 -3.5848 15 6 -1.6534 -6.7633 -4.8497 16 1 -1.0851 -7.1846 -5.6658 17 6 -3.0193 -6.6149 -4.9652 18 7 -3.7114 -6.1015 -3.9717 19 14 -3.8868 -7.1418 -6.5335 20 1 -3.6631 -8.5924 -6.7594 21 1 -5.3427 -6.8788 -6.4061 22 1 -3.3439 -6.3725 -7.6818 23 6 0.5470 -6.6084 -3.7165 24 6 1.2502 -6.2067 -2.4161 25 1 -0.3633 -0.9613 -0.3634 26 1 -0.3633 0.1659 1.0142 27 1 -0.3634 0.7953 -0.6507 28 1 2.4506 1.6817 0.9473 29 1 1.3035 2.1225 -0.3918 30 1 3.9466 0.5075 -0.5999 31 1 3.1902 1.5781 -1.8596 32 1 3.2483 -1.8485 -0.7013 33 1 3.2397 -1.5982 -2.4636 34 1 0.6358 -2.3371 -1.6564 35 1 -0.9791 -4.9246 -1.2002 36 1 -0.5797 -3.3425 -1.9177 37 1 -0.7655 -4.2759 -4.1826 38 1 -2.2555 -4.6475 -3.2815 39 1 -1.3519 -6.9026 -2.7419 40 1 -4.6722 -5.9967 -4.0532 41 1 0.9507 -6.0246 -4.5437 42 1 0.7100 -7.6693 -3.9056 43 1 2.3289 -6.3042 -2.5390 44 1 0.9131 -6.8513 -1.6043 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925414580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = 4.753273 kcal Electronic energy + Delta-G solvation = -22813.873946 eV Core-core repulsion = 19574.131516 eV Total energy + Delta-G solvation = -3239.742430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42543 -39.58125 -36.87138 -34.39734 -33.44624 -31.33736 -30.81494 -29.98992 -28.28188 -26.00193 -24.36870 -23.64766 -22.75245 -22.11794 -20.29022 -19.86716 -18.72208 -17.70014 -16.45237 -16.24579 -15.96946 -15.36753 -15.21523 -14.79290 -14.55291 -14.09935 -13.60917 -13.38600 -13.28045 -13.11618 -12.74943 -12.59770 -12.43751 -11.94005 -11.74720 -11.71753 -11.52417 -11.30005 -11.05636 -11.00317 -10.93025 -10.66177 -10.37072 -10.14809 -9.71593 -9.52864 -9.15933 -9.09900 -8.94579 -8.82000 -8.37613 -7.84159 -6.03545 -4.09595 3.05133 3.29145 3.33731 3.37019 3.56585 3.66753 4.15748 4.31427 4.40342 4.52590 4.85129 4.88398 5.04127 5.06048 5.18808 5.25647 5.36509 5.46218 5.56960 5.65234 5.66674 5.74722 5.82931 5.94188 5.98811 6.09564 6.12454 6.20975 6.26837 6.50315 6.70013 6.70720 6.79902 6.90107 7.01886 7.15766 7.24237 7.49681 7.66831 7.92752 8.03237 8.37058 8.40950 8.93707 9.01697 9.55371 11.01774 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022969 B = 0.003859 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.740783 B = 7254.508056 C = 7999.943463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.477 5.477 3 C -0.001 4.001 4 C -0.135 4.135 5 C 0.015 3.985 6 H 0.085 0.915 7 C 0.161 3.839 8 N -0.748 5.748 9 C 0.706 3.294 10 O -0.606 6.606 11 N -0.619 5.619 12 C 0.111 3.889 13 C -0.122 4.122 14 C 0.050 3.950 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.124 4.124 24 C 0.130 3.870 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.393 0.607 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.102 0.898 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.732 14.170 6.819 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.200 5.200 3 C -0.129 4.129 4 C -0.173 4.173 5 C -0.095 4.095 6 H 0.103 0.897 7 C 0.036 3.964 8 N -0.407 5.407 9 C 0.408 3.592 10 O -0.486 6.486 11 N -0.356 5.356 12 C -0.011 4.011 13 C -0.161 4.161 14 C 0.031 3.969 15 C -0.550 4.550 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.162 4.162 24 C 0.008 3.992 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.230 0.770 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.121 0.879 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.528 13.492 7.416 17.600 hybrid contribution -1.627 0.468 -1.468 2.241 sum 6.902 13.961 5.948 16.671 Atomic orbital electron populations 1.22896 0.89412 1.01553 1.02261 1.68601 1.09280 1.18280 1.23812 1.23938 0.97341 0.91305 1.00359 1.23313 0.98262 0.96852 0.98905 1.23780 0.97750 0.95862 0.92120 0.89734 1.21006 0.89521 0.84106 1.01815 1.45214 1.09759 1.06006 1.79703 1.15836 0.84849 0.80711 0.77832 1.90844 1.18030 1.79547 1.60191 1.47396 1.05657 1.09606 1.72924 1.21960 0.80324 0.97626 1.01233 1.22089 1.02338 0.99462 0.92206 1.18612 0.89061 0.91998 0.97214 1.21190 0.92168 1.40688 1.00943 0.92752 1.24957 0.97521 0.95164 0.96304 1.69827 1.07081 1.45090 1.31164 0.86679 0.78404 0.79198 0.83840 1.20289 1.21333 1.20375 1.22028 0.99039 1.00072 0.95102 1.21556 1.00322 0.79587 0.97773 0.91287 0.90927 0.94587 0.89213 0.91214 0.88593 0.90580 0.90916 0.91391 0.76989 0.92009 0.92851 0.94313 0.87946 0.95450 0.92970 0.93029 0.92137 0.90331 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.48 -4.80 6.37 -237.96 -1.52 -6.31 16 3 C 0.00 -0.01 7.98 -2.64 -0.02 -0.03 16 4 C -0.13 -1.02 7.86 -25.79 -0.20 -1.22 16 5 C 0.01 0.14 3.34 -66.65 -0.22 -0.08 16 6 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 7 C 0.16 2.04 5.71 -4.04 -0.02 2.01 16 8 N -0.75 -11.21 5.47 -65.23 -0.36 -11.57 16 9 C 0.71 13.31 8.30 -86.92 -0.72 12.59 16 10 O -0.61 -13.18 15.79 5.29 0.08 -13.10 16 11 N -0.62 -11.67 2.97 -178.23 -0.53 -12.20 16 12 C 0.11 2.02 6.46 -3.48 -0.02 1.99 16 13 C -0.12 -2.69 5.17 -26.38 -0.14 -2.82 16 14 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 15 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.32 11.30 55.43 0.63 -23.69 16 19 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.12 -2.58 5.30 -26.61 -0.14 -2.73 16 24 C 0.13 2.49 6.42 -3.71 -0.02 2.46 16 25 H 0.07 0.68 7.15 -51.93 -0.37 0.31 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.29 7.63 -51.93 -0.40 -0.11 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.46 7.62 -51.93 -0.40 0.06 16 30 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.39 5.34 4.93 -40.82 -0.20 5.14 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.82 5.56 -51.93 -0.29 0.53 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 2.49 6.03 -51.93 -0.31 2.17 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.51 7.04 -51.93 -0.37 1.14 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -30.16 342.45 -10.42 -40.58 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.36 Total: 4.10 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.51 Total: 1.26 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.77 Total: -53.77 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.16 -10.42 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925414580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.330 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds