Wall clock time and date at job start Tue Mar 31 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47957 * 110.99727 * 2 1 4 4 C 1.53944 * 86.17991 * 222.41647 * 3 2 1 5 5 C 1.47957 * 110.99709 * 260.64251 * 2 1 3 6 6 H 1.09003 * 113.76350 * 23.26097 * 5 2 1 7 7 C 1.53003 * 113.75897 * 251.89793 * 5 2 1 8 8 N 1.46501 * 109.47031 * 78.43863 * 7 5 2 9 9 C 1.34777 * 119.99997 * 179.97438 * 8 7 5 10 10 O 1.21587 * 120.00450 * 355.02136 * 9 8 7 11 11 N 1.34779 * 119.99676 * 175.02102 * 9 8 7 12 12 C 1.46921 * 120.63385 * 5.22639 * 11 9 8 13 13 C 1.53196 * 108.77615 * 126.37041 * 12 11 9 14 14 C 1.53035 * 109.31288 * 54.63556 * 13 12 11 15 15 C 1.53038 * 109.54027 * 298.63560 * 14 13 12 16 16 H 1.08997 * 109.50078 * 301.38127 * 15 14 13 17 17 C 1.50697 * 109.50063 * 181.31402 * 15 14 13 18 18 H 1.07998 * 119.99929 * 0.02562 * 17 15 14 19 19 C 1.37877 * 120.00344 * 180.02562 * 17 15 14 20 20 N 1.31523 * 119.99506 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00286 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47125 * 90.00040 * 21 19 17 23 23 H 1.48499 * 109.46951 * 209.99751 * 21 19 17 24 24 H 1.48493 * 109.47047 * 329.99647 * 21 19 17 25 25 C 1.46927 * 120.63084 * 184.94948 * 11 9 8 26 26 H 1.09002 * 109.47168 * 38.46984 * 1 2 3 27 27 H 1.08996 * 109.47099 * 158.47667 * 1 2 3 28 28 H 1.09001 * 109.46665 * 278.46971 * 1 2 3 29 29 H 1.09006 * 113.75669 * 108.10848 * 3 2 1 30 30 H 1.08997 * 113.86274 * 336.74614 * 3 2 1 31 31 H 1.08996 * 113.73043 * 138.07988 * 4 3 2 32 32 H 1.09001 * 113.73335 * 269.36534 * 4 3 2 33 33 H 1.08993 * 109.47480 * 198.43763 * 7 5 2 34 34 H 1.09001 * 109.47538 * 318.44333 * 7 5 2 35 35 H 0.97006 * 119.99948 * 0.02562 * 8 7 5 36 36 H 1.08999 * 109.59329 * 246.15485 * 12 11 9 37 37 H 1.09001 * 109.58490 * 6.44018 * 12 11 9 38 38 H 1.09005 * 109.49871 * 174.58990 * 13 12 11 39 39 H 1.09000 * 109.49415 * 294.65073 * 13 12 11 40 40 H 1.09006 * 109.46059 * 58.65564 * 14 13 12 41 41 H 1.09001 * 109.46403 * 178.62785 * 14 13 12 42 42 H 0.97000 * 119.99466 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.58398 * 353.41482 * 25 11 9 44 44 H 1.09001 * 109.59274 * 113.83789 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 1.9992 -0.2246 -1.3629 6 1 1.3009 0.0441 -2.1557 7 6 2.6263 -1.6062 -1.5605 8 7 1.5672 -2.6010 -1.7471 9 6 1.8857 -3.8962 -1.9408 10 8 3.0508 -4.2258 -2.0511 11 7 0.9127 -4.8260 -2.0121 12 6 -0.5025 -4.4316 -1.9952 13 6 -1.2000 -5.0451 -3.2133 14 6 -0.9693 -6.5580 -3.2199 15 6 0.5299 -6.8467 -3.3255 16 1 0.9241 -6.3957 -4.2362 17 6 0.7538 -8.3364 -3.3644 18 1 -0.0888 -9.0105 -3.3189 19 6 2.0343 -8.8390 -3.4582 20 7 3.0604 -8.0181 -3.5131 21 14 2.3118 -10.6856 -3.5071 22 1 2.2921 -11.1519 -4.9169 23 1 3.6283 -11.0046 -2.8986 24 1 1.2357 -11.3682 -2.7448 25 6 1.2470 -6.2531 -2.1143 26 1 -0.3633 0.8046 -0.6393 27 1 -0.3633 -0.9560 -0.3770 28 1 -0.3633 0.1514 1.0165 29 1 2.4460 1.6802 0.9483 30 1 1.3022 2.1211 -0.3935 31 1 3.1920 1.5758 -1.8568 32 1 3.9451 0.5051 -0.5952 33 1 3.2694 -1.5908 -2.4404 34 1 3.2178 -1.8657 -0.6826 35 1 0.6366 -2.3274 -1.7320 36 1 -0.9729 -4.7970 -1.0824 37 1 -0.5794 -3.3450 -2.0362 38 1 -2.2694 -4.8404 -3.1617 39 1 -0.7899 -4.6101 -4.1247 40 1 -1.3579 -6.9886 -2.2970 41 1 -1.4849 -7.0003 -4.0723 42 1 3.9613 -8.3716 -3.5794 43 1 2.3241 -6.3682 -2.2364 44 1 0.9223 -6.7702 -1.2113 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925429441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:07 Heat of formation + Delta-G solvation = 7.170549 kcal Electronic energy + Delta-G solvation = -22944.574857 eV Core-core repulsion = 19704.937248 eV Total energy + Delta-G solvation = -3239.637609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36486 -39.38910 -36.78840 -34.20138 -33.19103 -31.70247 -30.91202 -29.74145 -28.19997 -25.02778 -24.49136 -24.36848 -22.94139 -21.76185 -20.21275 -19.78689 -18.64035 -17.53264 -16.41266 -16.17989 -15.75771 -15.31607 -15.11841 -14.57272 -14.48082 -13.84342 -13.65105 -13.48985 -13.38535 -13.00824 -12.79759 -12.53785 -12.29002 -11.97490 -11.79720 -11.72161 -11.60689 -11.03855 -10.99149 -10.92816 -10.85633 -10.45342 -10.36722 -10.17812 -9.82500 -9.36192 -9.08576 -9.04123 -8.88978 -8.63562 -8.36007 -7.56503 -5.92726 -4.02216 3.24990 3.35628 3.42164 3.44458 3.62391 3.94936 4.22654 4.41382 4.49013 4.58199 4.84820 4.93099 5.03391 5.07537 5.17837 5.31409 5.36736 5.38414 5.50258 5.53308 5.61194 5.65816 5.74580 5.82799 5.98812 6.04095 6.16082 6.19664 6.35055 6.63094 6.72021 6.76798 6.85355 6.92846 7.04096 7.10709 7.42909 7.57906 7.80758 7.99421 8.13271 8.46852 8.67304 9.01543 9.35146 9.63164 11.12072 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029698 B = 0.003884 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.593730 B = 7206.806966 C = 7902.151818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.477 5.477 3 C -0.001 4.001 4 C -0.136 4.136 5 C 0.017 3.983 6 H 0.083 0.917 7 C 0.160 3.840 8 N -0.755 5.755 9 C 0.700 3.300 10 O -0.582 6.582 11 N -0.623 5.623 12 C 0.117 3.883 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.878 5.878 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.129 3.871 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.387 0.613 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 18.780 5.115 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.199 5.199 3 C -0.130 4.130 4 C -0.174 4.174 5 C -0.093 4.093 6 H 0.101 0.899 7 C 0.035 3.965 8 N -0.414 5.414 9 C 0.402 3.598 10 O -0.459 6.459 11 N -0.360 5.360 12 C -0.007 4.007 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.008 3.992 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.222 0.778 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.141 0.859 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.099 18.045 5.587 19.567 hybrid contribution -0.851 -0.273 -0.650 1.105 sum -5.950 17.772 4.937 19.381 Atomic orbital electron populations 1.22880 0.89697 1.01257 1.02159 1.68565 1.09072 1.18199 1.24088 1.23906 0.97380 0.91255 1.00429 1.23324 0.98360 0.96853 0.98856 1.23777 0.97600 0.96105 0.91808 0.89934 1.20977 0.89632 0.84103 1.01776 1.45278 1.09177 1.06668 1.80323 1.15948 0.85388 0.80307 0.78203 1.90927 1.17550 1.79984 1.57466 1.47764 1.03690 1.08330 1.76236 1.21453 0.83155 0.97443 0.98636 1.21949 0.98587 0.98864 0.97775 1.21608 1.00354 0.92251 1.00478 1.18908 0.88932 0.95732 0.94466 0.95393 1.21067 0.92357 0.90964 1.51658 0.92430 1.25065 0.96301 0.97782 0.94910 1.69910 0.98721 1.33930 1.48945 0.86604 0.77561 0.85792 0.78096 1.20749 1.21192 1.19946 1.22075 1.05694 0.73469 0.97922 0.94763 0.91433 0.91033 0.89234 0.91321 0.90624 0.88505 0.91246 0.91050 0.77787 0.92257 0.92504 0.92418 0.92242 0.93213 0.93107 0.92679 0.85876 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.66 60.07 0.58 0.49 16 2 N -0.48 -4.82 6.36 -238.95 -1.52 -6.34 16 3 C 0.00 -0.01 7.96 -2.76 -0.02 -0.03 16 4 C -0.14 -1.08 7.85 -25.79 -0.20 -1.29 16 5 C 0.02 0.17 3.35 -66.65 -0.22 -0.06 16 6 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 7 C 0.16 2.21 5.71 -4.04 -0.02 2.19 16 8 N -0.76 -11.95 5.47 -65.22 -0.36 -12.30 16 9 C 0.70 14.98 8.30 -86.92 -0.72 14.26 16 10 O -0.58 -15.23 15.77 5.29 0.08 -15.15 16 11 N -0.62 -13.07 2.98 -178.76 -0.53 -13.60 16 12 C 0.12 1.88 6.39 -3.71 -0.02 1.86 16 13 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 14 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 15 C 0.04 0.98 2.24 -91.88 -0.21 0.78 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.39 8.56 -34.44 -0.29 -14.69 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -26.19 11.39 55.43 0.63 -25.56 16 21 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.13 3.24 5.39 -3.93 -0.02 3.22 16 26 H 0.03 0.25 7.60 -51.93 -0.39 -0.15 16 27 H 0.07 0.60 7.28 -51.93 -0.38 0.22 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.44 7.61 -51.93 -0.40 0.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.39 5.10 5.10 -40.82 -0.21 4.89 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 43 H 0.12 3.63 5.10 -51.93 -0.26 3.36 16 44 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -32.97 342.84 -10.48 -43.45 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.38 Total: 4.08 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.55 Total: 3.69 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -1.78 Total: -57.80 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.08 Total: -15.15 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.97 -10.48 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925429441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.618 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds