Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47960 * 111.00234 * 2 1 4 4 C 1.53938 * 86.18283 * 137.58276 * 3 2 1 5 5 C 1.47964 * 111.00135 * 99.36148 * 2 1 3 6 6 H 1.09001 * 113.75465 * 336.73428 * 5 2 1 7 7 C 1.52991 * 113.86298 * 108.08505 * 5 2 1 8 8 N 1.46502 * 109.47402 * 281.61311 * 7 5 2 9 9 C 1.34771 * 120.00258 * 180.02562 * 8 7 5 10 10 O 1.21584 * 120.00427 * 354.91751 * 9 8 7 11 11 N 1.34779 * 119.99763 * 174.92272 * 9 8 7 12 12 C 1.46926 * 120.63531 * 4.74019 * 11 9 8 13 13 C 1.52762 * 109.00896 * 233.58720 * 12 11 9 14 14 C 1.53043 * 109.37948 * 305.58575 * 13 12 11 15 15 C 1.53035 * 109.53830 * 61.24238 * 14 13 12 16 16 H 1.09000 * 109.49905 * 58.58696 * 15 14 13 17 17 C 1.50704 * 109.52162 * 178.66535 * 15 14 13 18 18 H 1.07993 * 120.00205 * 359.85492 * 17 15 14 19 19 C 1.37881 * 120.00013 * 179.85430 * 17 15 14 20 20 N 1.31511 * 119.99863 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00025 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46943 * 89.99917 * 21 19 17 23 23 H 1.48501 * 109.46896 * 209.99818 * 21 19 17 24 24 H 1.48505 * 109.47030 * 329.99754 * 21 19 17 25 25 C 1.46931 * 120.62651 * 185.01851 * 11 9 8 26 26 H 1.09006 * 109.46849 * 81.53027 * 1 2 3 27 27 H 1.08995 * 109.46943 * 201.52554 * 1 2 3 28 28 H 1.08998 * 109.47010 * 321.53087 * 1 2 3 29 29 H 1.09001 * 113.75776 * 23.26396 * 3 2 1 30 30 H 1.08998 * 113.75910 * 251.90231 * 3 2 1 31 31 H 1.08990 * 113.73312 * 90.63836 * 4 3 2 32 32 H 1.09003 * 113.72967 * 221.81981 * 4 3 2 33 33 H 1.09000 * 109.47415 * 41.61192 * 7 5 2 34 34 H 1.09002 * 109.47510 * 161.61141 * 7 5 2 35 35 H 0.97003 * 119.99674 * 359.97438 * 8 7 5 36 36 H 1.09007 * 109.58205 * 353.42117 * 12 11 9 37 37 H 1.08999 * 109.58545 * 113.84390 * 12 11 9 38 38 H 1.08999 * 109.56029 * 185.55059 * 13 12 11 39 39 H 1.08997 * 109.38677 * 65.51228 * 13 12 11 40 40 H 1.08999 * 109.46164 * 301.21554 * 14 13 12 41 41 H 1.09007 * 109.45652 * 181.26493 * 14 13 12 42 42 H 0.97001 * 120.00107 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.58701 * 246.15159 * 25 11 9 44 44 H 1.08998 * 109.58637 * 6.58219 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 1.0360 5 6 1.9993 -0.2247 1.3630 6 1 1.3010 0.0440 2.1556 7 6 2.6266 -1.6057 1.5631 8 7 1.5676 -2.6007 1.7496 9 6 1.8864 -3.8955 1.9453 10 8 3.0463 -4.2533 1.8754 11 7 0.9194 -4.7937 2.2185 12 6 -0.4955 -4.3981 2.2042 13 6 -1.1357 -4.7918 3.5342 14 6 -0.9020 -6.2827 3.7887 15 6 0.6010 -6.5580 3.8738 16 1 1.0356 -5.9600 4.6749 17 6 0.8299 -8.0204 4.1570 18 1 -0.0123 -8.6872 4.2678 19 6 2.1146 -8.5070 4.2745 20 7 3.1402 -7.6951 4.1390 21 14 2.3984 -10.3198 4.6247 22 1 2.5002 -11.0617 3.3423 23 1 3.6584 -10.4842 5.3931 24 1 1.2620 -10.8547 5.4171 25 6 1.2606 -6.1857 2.5422 26 1 -0.3633 0.1514 -1.0165 27 1 -0.3633 -0.9560 0.3771 28 1 -0.3633 0.8046 0.6393 29 1 1.3010 2.1198 0.3940 30 1 2.4460 1.6802 -0.9483 31 1 3.9451 0.5051 0.5952 32 1 3.1934 1.5766 1.8559 33 1 3.2194 -1.8660 0.6863 34 1 3.2686 -1.5890 2.4439 35 1 0.6370 -2.3275 1.7328 36 1 -0.5719 -3.3192 2.0687 37 1 -1.0093 -4.9082 1.3894 38 1 -2.2066 -4.5925 3.4969 39 1 -0.6852 -4.2104 4.3387 40 1 -1.3317 -6.8623 2.9716 41 1 -1.3776 -6.5699 4.7266 42 1 4.0441 -8.0374 4.2213 43 1 0.8928 -6.8445 1.7555 44 1 2.3424 -6.2859 2.6296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925429442.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = 7.063675 kcal Electronic energy + Delta-G solvation = -22954.166261 eV Core-core repulsion = 19714.524017 eV Total energy + Delta-G solvation = -3239.642244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36019 -39.39356 -36.79519 -34.20670 -33.19524 -31.71049 -30.91142 -29.75227 -28.19996 -25.03670 -24.49101 -24.36539 -22.93677 -21.76798 -20.21367 -19.78780 -18.62831 -17.55100 -16.42242 -16.17154 -15.74856 -15.33620 -15.06263 -14.59736 -14.51641 -13.83520 -13.68370 -13.47997 -13.37858 -13.07736 -12.73113 -12.55420 -12.30751 -11.95389 -11.79499 -11.71295 -11.60361 -11.03384 -10.99639 -10.93883 -10.84158 -10.47743 -10.35718 -10.19221 -9.83719 -9.37090 -9.08233 -9.06038 -8.89635 -8.62361 -8.38027 -7.57033 -5.94220 -4.03303 3.25138 3.35200 3.41620 3.43804 3.62264 3.95923 4.23171 4.40838 4.48462 4.58180 4.85103 4.93885 5.03921 5.08143 5.18345 5.31190 5.35698 5.38864 5.50866 5.53571 5.61081 5.65428 5.75000 5.83356 5.99094 6.04349 6.17046 6.19120 6.34383 6.62260 6.70691 6.77015 6.84998 6.93205 7.02758 7.12228 7.40662 7.56814 7.79886 7.98063 8.11824 8.45593 8.67045 9.00291 9.34731 9.62120 11.10867 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029807 B = 0.003897 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.164106 B = 7183.558034 C = 7875.263166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.477 5.477 3 C -0.001 4.001 4 C -0.136 4.136 5 C 0.017 3.983 6 H 0.083 0.917 7 C 0.160 3.840 8 N -0.755 5.755 9 C 0.701 3.299 10 O -0.584 6.584 11 N -0.624 5.624 12 C 0.117 3.883 13 C -0.134 4.134 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.130 3.870 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.387 0.613 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.038 0.962 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 18.086 -6.057 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.199 5.199 3 C -0.130 4.130 4 C -0.174 4.174 5 C -0.093 4.093 6 H 0.101 0.899 7 C 0.035 3.965 8 N -0.414 5.414 9 C 0.403 3.597 10 O -0.461 6.461 11 N -0.360 5.360 12 C -0.007 4.007 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.009 3.991 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.222 0.778 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.303 17.336 -6.628 19.303 hybrid contribution -0.841 -0.256 0.795 1.185 sum -6.145 17.080 -5.833 19.066 Atomic orbital electron populations 1.22879 0.89711 1.01252 1.02145 1.68555 1.09050 1.18227 1.24112 1.23908 0.97379 0.91246 1.00424 1.23321 0.98356 0.96856 0.98864 1.23771 0.97600 0.96106 0.91793 0.89937 1.20977 0.89632 0.84072 1.01828 1.45265 1.09178 1.06671 1.80306 1.15930 0.85257 0.80333 0.78211 1.90913 1.17953 1.78654 1.58611 1.47773 1.03951 1.12016 1.72291 1.21373 0.83283 0.97867 0.98165 1.21880 0.98858 0.99518 0.96965 1.21608 1.00326 0.92522 1.00240 1.18991 0.89071 0.96522 0.93411 0.95402 1.21072 0.92102 0.93298 1.49562 0.92412 1.25058 0.96294 0.97690 0.94985 1.69895 0.98566 1.34431 1.48725 0.86599 0.77585 0.85518 0.78320 1.20642 1.21234 1.19986 1.22167 1.05512 0.74831 0.96584 0.91044 0.91457 0.94749 0.91323 0.89226 0.88511 0.90615 0.90928 0.91341 0.77760 0.92491 0.92234 0.92394 0.92258 0.93201 0.93102 0.92665 0.94358 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.66 60.06 0.58 0.49 16 2 N -0.48 -4.85 6.36 -238.94 -1.52 -6.37 16 3 C 0.00 -0.01 7.97 -2.77 -0.02 -0.03 16 4 C -0.14 -1.10 7.85 -25.79 -0.20 -1.30 16 5 C 0.02 0.17 3.35 -66.66 -0.22 -0.05 16 6 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 7 C 0.16 2.23 5.72 -4.05 -0.02 2.21 16 8 N -0.75 -12.01 5.47 -65.23 -0.36 -12.37 16 9 C 0.70 15.02 8.30 -86.92 -0.72 14.30 16 10 O -0.58 -15.25 15.78 5.29 0.08 -15.17 16 11 N -0.62 -13.07 2.98 -178.76 -0.53 -13.60 16 12 C 0.12 1.88 6.40 -3.93 -0.03 1.85 16 13 C -0.13 -2.18 6.07 -26.83 -0.16 -2.34 16 14 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.34 8.57 -34.44 -0.29 -14.64 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -26.11 11.39 55.43 0.63 -25.48 16 21 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.13 3.25 5.39 -3.71 -0.02 3.23 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.60 7.28 -51.93 -0.38 0.22 16 28 H 0.03 0.25 7.60 -51.93 -0.39 -0.15 16 29 H 0.07 0.45 7.60 -51.93 -0.39 0.05 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 5.13 5.07 -40.82 -0.21 4.92 16 36 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.12 3.60 5.15 -51.93 -0.27 3.33 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -32.83 342.82 -10.48 -43.31 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.38 Total: 4.15 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.55 Total: 3.84 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -1.78 Total: -57.82 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.83 -10.48 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925429442.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.375 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds