Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47960 * 111.00189 * 2 1 4 4 C 1.53942 * 86.18096 * 222.41716 * 3 2 1 5 5 C 1.47963 * 111.00075 * 260.64020 * 2 1 3 6 6 H 1.09004 * 113.85530 * 23.25591 * 5 2 1 7 7 C 1.52998 * 113.75941 * 251.90211 * 5 2 1 8 8 N 1.46502 * 109.46988 * 78.43900 * 7 5 2 9 9 C 1.34771 * 119.99891 * 179.97438 * 8 7 5 10 10 O 1.21586 * 120.00411 * 4.97436 * 9 8 7 11 11 N 1.34780 * 120.00280 * 184.97946 * 9 8 7 12 12 C 1.46927 * 120.62538 * 354.69338 * 11 9 8 13 13 C 1.53195 * 108.77352 * 233.33513 * 12 11 9 14 14 C 1.53032 * 109.31502 * 305.36806 * 13 12 11 15 15 C 1.53037 * 109.54066 * 61.36422 * 14 13 12 16 16 H 1.09003 * 109.49727 * 58.62113 * 15 14 13 17 17 C 1.50702 * 109.50091 * 178.68331 * 15 14 13 18 18 H 1.08002 * 119.99871 * 5.25652 * 17 15 14 19 19 C 1.37878 * 120.00072 * 185.25328 * 17 15 14 20 20 N 1.31509 * 120.00013 * 5.11193 * 19 17 15 21 21 Si 1.86800 * 119.99889 * 185.10766 * 19 17 15 22 22 H 1.48493 * 109.47207 * 85.00182 * 21 19 17 23 23 H 1.48497 * 109.46950 * 205.00510 * 21 19 17 24 24 H 1.48506 * 109.46900 * 324.99947 * 21 19 17 25 25 C 1.46924 * 120.63152 * 174.41672 * 11 9 8 26 26 H 1.08993 * 109.47264 * 159.35839 * 1 2 3 27 27 H 1.09003 * 109.47191 * 279.36065 * 1 2 3 28 28 H 1.09008 * 109.46961 * 39.35536 * 1 2 3 29 29 H 1.09002 * 113.75951 * 108.10082 * 3 2 1 30 30 H 1.08998 * 113.85864 * 336.75005 * 3 2 1 31 31 H 1.08997 * 113.73149 * 269.36177 * 4 3 2 32 32 H 1.08998 * 113.72546 * 138.08279 * 4 3 2 33 33 H 1.08998 * 109.47221 * 318.43923 * 7 5 2 34 34 H 1.09007 * 109.47091 * 198.43512 * 7 5 2 35 35 H 0.97000 * 120.00136 * 0.02562 * 8 7 5 36 36 H 1.08997 * 109.58653 * 353.12536 * 12 11 9 37 37 H 1.08995 * 109.58509 * 113.55159 * 12 11 9 38 38 H 1.08999 * 109.49324 * 65.32187 * 13 12 11 39 39 H 1.09006 * 109.49471 * 185.41043 * 13 12 11 40 40 H 1.09001 * 109.46322 * 181.38718 * 14 13 12 41 41 H 1.09008 * 109.46006 * 301.34417 * 14 13 12 42 42 H 0.97003 * 120.00164 * 180.02562 * 20 19 17 43 43 H 1.09005 * 109.58529 * 246.44568 * 25 11 9 44 44 H 1.08992 * 109.58760 * 6.87801 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0361 5 6 1.9992 -0.2247 -1.3630 6 1 1.3021 0.0434 -2.1569 7 6 2.6263 -1.6062 -1.5605 8 7 1.5671 -2.6010 -1.7471 9 6 1.8856 -3.8961 -1.9408 10 8 3.0455 -4.2541 -1.8706 11 7 0.9184 -4.7947 -2.2122 12 6 -0.4971 -4.4017 -2.1862 13 6 -1.2572 -5.3576 -1.2613 14 6 -1.0134 -6.7994 -1.7127 15 6 0.4799 -7.1201 -1.6168 16 1 0.8173 -6.9785 -0.5901 17 6 0.7149 -8.5500 -2.0306 18 1 -0.1030 -9.1430 -2.4126 19 6 1.9740 -9.1012 -1.9218 20 7 2.9467 -8.4139 -1.3642 21 14 2.2981 -10.8243 -2.5661 22 1 2.6070 -10.7602 -4.0171 23 1 3.4508 -11.4155 -1.8402 24 1 1.0941 -11.6671 -2.3530 25 6 1.2598 -6.1843 -2.5457 26 1 -0.3633 -0.9616 -0.3622 27 1 -0.3634 0.1672 1.0140 28 1 -0.3633 0.7947 -0.6517 29 1 2.4460 1.6802 0.9483 30 1 1.3022 2.1211 -0.3935 31 1 3.9451 0.5050 -0.5952 32 1 3.1921 1.5759 -1.8567 33 1 3.2178 -1.8657 -0.6825 34 1 3.2694 -1.5909 -2.4404 35 1 0.6366 -2.3274 -1.7321 36 1 -0.5864 -3.3822 -1.8112 37 1 -0.9112 -4.4606 -3.1927 38 1 -0.9034 -5.2318 -0.2381 39 1 -2.3238 -5.1372 -1.3076 40 1 -1.5729 -7.4803 -1.0713 41 1 -1.3448 -6.9179 -2.7444 42 1 3.8326 -8.8015 -1.2879 43 1 0.9889 -6.3886 -3.5816 44 1 2.3296 -6.3408 -2.4079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925429443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = 6.078026 kcal Electronic energy + Delta-G solvation = -22953.147032 eV Core-core repulsion = 19713.462047 eV Total energy + Delta-G solvation = -3239.684985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36695 -39.40727 -36.78851 -34.22135 -33.17227 -31.69643 -30.91163 -29.78782 -28.20686 -25.01272 -24.50651 -24.36365 -22.94535 -21.78508 -20.22226 -19.77869 -18.66972 -17.54322 -16.45694 -16.13859 -15.79009 -15.33643 -15.03147 -14.73594 -14.41799 -13.80638 -13.63748 -13.48674 -13.38592 -13.19628 -12.66369 -12.53225 -12.31178 -11.92965 -11.83276 -11.72068 -11.64035 -11.04487 -10.98456 -10.92142 -10.86599 -10.49581 -10.37362 -10.19909 -9.81776 -9.40119 -9.07746 -8.98914 -8.92513 -8.65671 -8.35477 -7.59512 -5.93730 -4.00931 3.22824 3.36376 3.42679 3.44369 3.62486 3.91838 4.22190 4.40264 4.49396 4.57257 4.85279 4.92135 5.03898 5.07447 5.18068 5.30656 5.37284 5.38934 5.49603 5.52875 5.62239 5.65886 5.73543 5.82482 5.97763 6.03144 6.18028 6.19866 6.35175 6.62201 6.69598 6.77273 6.84940 6.91321 7.03103 7.06171 7.36800 7.55581 7.81155 7.95805 8.07537 8.46148 8.63738 9.03530 9.32013 9.63811 11.13220 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028663 B = 0.003933 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.639182 B = 7117.070733 C = 7784.608307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.476 5.476 3 C -0.001 4.001 4 C -0.136 4.136 5 C 0.017 3.983 6 H 0.082 0.918 7 C 0.160 3.840 8 N -0.754 5.754 9 C 0.700 3.300 10 O -0.583 6.583 11 N -0.624 5.624 12 C 0.118 3.882 13 C -0.134 4.134 14 C -0.109 4.109 15 C 0.038 3.962 16 H 0.035 0.965 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.876 5.876 21 Si 0.889 3.111 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.134 3.866 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.387 0.613 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.263 0.737 43 H 0.040 0.960 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 19.840 -0.389 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.198 5.198 3 C -0.130 4.130 4 C -0.174 4.174 5 C -0.093 4.093 6 H 0.100 0.900 7 C 0.035 3.965 8 N -0.414 5.414 9 C 0.402 3.598 10 O -0.460 6.460 11 N -0.361 5.361 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.019 3.981 16 H 0.053 0.947 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.513 5.513 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.200 1.200 25 C 0.013 3.987 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.222 0.778 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.958 19.082 0.232 19.716 hybrid contribution -0.788 -0.224 -0.918 1.231 sum -5.746 18.857 -0.686 19.725 Atomic orbital electron populations 1.22879 0.89669 1.01265 1.02164 1.68573 1.09097 1.18182 1.23981 1.23903 0.97352 0.91263 1.00455 1.23323 0.98392 0.96820 0.98849 1.23772 0.97607 0.96067 0.91862 0.89978 1.20985 0.89618 0.84100 1.01839 1.45270 1.09203 1.06625 1.80270 1.15951 0.85325 0.80353 0.78211 1.90924 1.18060 1.78589 1.58444 1.47740 1.03965 1.11856 1.72490 1.21457 0.82828 0.96868 0.99463 1.21951 0.98268 0.97530 0.99447 1.21608 1.00344 0.92986 0.99715 1.18987 0.88712 0.93908 0.96480 0.94721 1.21039 0.94828 0.96183 1.44133 0.92480 1.25053 0.96507 0.97519 0.94839 1.69969 1.02032 1.37354 1.41960 0.86658 0.77763 0.84777 0.79087 1.20576 1.21297 1.20030 1.22075 1.04536 0.74936 0.97144 0.91415 0.90988 0.94808 0.89204 0.91336 0.88482 0.90660 0.90822 0.91450 0.77757 0.92436 0.92266 0.92124 0.92406 0.93012 0.93324 0.92719 0.94191 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.06 0.58 0.49 16 2 N -0.48 -4.93 6.36 -238.94 -1.52 -6.45 16 3 C 0.00 -0.01 7.96 -2.76 -0.02 -0.03 16 4 C -0.14 -1.08 7.85 -25.80 -0.20 -1.28 16 5 C 0.02 0.16 3.35 -66.66 -0.22 -0.06 16 6 H 0.08 0.72 7.93 -51.93 -0.41 0.31 16 7 C 0.16 2.19 5.71 -4.04 -0.02 2.17 16 8 N -0.75 -11.84 5.46 -65.22 -0.36 -12.20 16 9 C 0.70 14.86 8.29 -86.92 -0.72 14.14 16 10 O -0.58 -15.18 15.77 5.29 0.08 -15.10 16 11 N -0.62 -12.92 2.97 -178.50 -0.53 -13.45 16 12 C 0.12 1.87 6.38 -3.71 -0.02 1.84 16 13 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 14 C -0.11 -2.20 5.11 -26.70 -0.14 -2.34 16 15 C 0.04 0.97 2.12 -91.65 -0.19 0.78 16 16 H 0.03 1.00 8.12 -51.93 -0.42 0.58 16 17 C -0.52 -14.44 8.49 -34.44 -0.29 -14.74 16 18 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 19 C 0.06 1.82 5.29 -17.82 -0.09 1.72 16 20 N -0.88 -26.33 12.00 55.43 0.67 -25.66 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.13 3.32 5.49 -3.71 -0.02 3.30 16 26 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.25 7.62 -51.92 -0.40 -0.15 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.44 7.62 -51.93 -0.40 0.05 16 31 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.39 5.05 5.13 -40.82 -0.21 4.84 16 36 H 0.06 0.73 5.65 -51.93 -0.29 0.44 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.11 3.18 5.73 -51.93 -0.30 2.89 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -33.25 344.05 -10.45 -43.69 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.42 Total: 3.76 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.54 Total: 3.63 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -1.74 Total: -57.76 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.08 Total: -15.10 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.25 -10.45 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925429443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.771 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds