Wall clock time and date at job start Tue Mar 31 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47475 * 110.99752 * 2 1 4 4 C 1.53511 * 87.93207 * 138.70603 * 3 2 1 5 5 C 1.47480 * 110.99994 * 95.96965 * 2 1 3 6 6 H 1.08992 * 113.47934 * 336.12910 * 5 2 1 7 7 C 1.53003 * 113.47362 * 106.52983 * 5 2 1 8 8 N 1.46500 * 109.47470 * 285.49723 * 7 5 2 9 9 C 1.34770 * 120.00300 * 179.97438 * 8 7 5 10 10 O 1.21593 * 120.00087 * 355.01421 * 9 8 7 11 11 N 1.34775 * 120.00174 * 175.00924 * 9 8 7 12 12 C 1.46922 * 120.63138 * 4.94386 * 11 9 8 13 13 C 1.53625 * 108.54468 * 126.36684 * 12 11 9 14 14 C 1.53041 * 109.24023 * 54.85816 * 13 12 11 15 15 C 1.53039 * 109.53881 * 298.50827 * 14 13 12 16 16 H 1.09001 * 109.52570 * 301.40406 * 15 14 13 17 17 C 1.50701 * 109.49727 * 181.31585 * 15 14 13 18 18 H 1.07996 * 120.00094 * 0.16606 * 17 15 14 19 19 C 1.37878 * 119.99968 * 180.16535 * 17 15 14 20 20 N 1.31516 * 119.99637 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00081 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47077 * 60.00069 * 21 19 17 23 23 H 1.48497 * 109.46981 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47182 * 300.00039 * 21 19 17 25 25 C 1.46929 * 120.63306 * 185.22168 * 11 9 8 26 26 H 1.09002 * 109.47102 * 324.02397 * 1 2 3 27 27 H 1.08997 * 109.47642 * 84.02915 * 1 2 3 28 28 H 1.08998 * 109.47211 * 204.02728 * 1 2 3 29 29 H 1.09003 * 113.47847 * 253.47184 * 3 2 1 30 30 H 1.08996 * 113.47713 * 23.87850 * 3 2 1 31 31 H 1.09007 * 114.17127 * 220.32981 * 4 3 2 32 32 H 1.09000 * 114.17094 * 87.61993 * 4 3 2 33 33 H 1.09006 * 109.47136 * 45.49318 * 7 5 2 34 34 H 1.08997 * 109.46965 * 165.49107 * 7 5 2 35 35 H 0.96999 * 119.99382 * 359.97438 * 8 7 5 36 36 H 1.08998 * 109.59266 * 246.20133 * 12 11 9 37 37 H 1.09010 * 109.58524 * 6.62861 * 12 11 9 38 38 H 1.09006 * 109.63279 * 294.86630 * 13 12 11 39 39 H 1.09003 * 109.45780 * 174.74563 * 13 12 11 40 40 H 1.08999 * 109.45633 * 178.49268 * 14 13 12 41 41 H 1.08993 * 109.44957 * 58.52609 * 14 13 12 42 42 H 0.97007 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58693 * 353.38031 * 25 11 9 44 44 H 1.09008 * 109.58491 * 113.65507 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3768 0.0000 4 6 3.0537 0.9121 1.0124 5 6 1.9975 -0.1432 1.3694 6 1 1.2997 0.1829 2.1405 7 6 2.5887 -1.5256 1.6530 8 7 1.5039 -2.4968 1.8151 9 6 1.7889 -3.7886 2.0730 10 8 2.9446 -4.1663 2.0814 11 7 0.7928 -4.6617 2.3217 12 6 -0.6121 -4.2466 2.2093 13 6 -1.3356 -5.2207 1.2672 14 6 -1.1421 -6.6513 1.7755 15 6 0.3485 -6.9978 1.7738 16 1 0.7457 -6.8935 0.7641 17 6 0.5355 -8.4174 2.2437 18 1 -0.3231 -9.0142 2.5139 19 6 1.8026 -8.9543 2.3287 20 7 2.8481 -8.2272 2.0001 21 14 2.0342 -10.7141 2.9106 22 1 1.3144 -11.6366 1.9962 23 1 3.4811 -11.0481 2.9132 24 1 1.4914 -10.8565 4.2855 25 6 1.0911 -6.0453 2.7162 26 1 -0.3633 0.8317 0.6037 27 1 -0.3634 0.1069 -1.0220 28 1 -0.3633 -0.9386 0.4184 29 1 2.4186 1.6803 -0.9585 30 1 1.2996 2.1098 0.4047 31 1 3.2549 1.6291 1.8084 32 1 3.9571 0.5039 0.5592 33 1 3.2245 -1.8267 0.8204 34 1 3.1812 -1.4867 2.5670 35 1 0.5806 -2.2100 1.7368 36 1 -1.0800 -4.2702 3.1934 37 1 -0.6632 -3.2366 1.8023 38 1 -0.9230 -5.1328 0.2621 39 1 -2.3992 -4.9829 1.2460 40 1 -1.6765 -7.3432 1.1246 41 1 -1.5325 -6.7319 2.7899 42 1 3.7396 -8.6051 2.0595 43 1 2.1641 -6.2225 2.6439 44 1 0.7616 -6.2119 3.7418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925429444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:13 Heat of formation + Delta-G solvation = 10.034870 kcal Electronic energy + Delta-G solvation = -23012.345653 eV Core-core repulsion = 19772.832250 eV Total energy + Delta-G solvation = -3239.513403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56007 -39.40655 -36.76100 -34.18824 -33.17719 -31.69375 -31.00914 -29.70628 -28.14046 -25.02042 -24.47251 -24.42103 -22.85007 -21.75882 -20.23773 -19.81647 -18.68031 -17.52430 -16.47232 -16.13853 -15.77826 -15.28755 -14.99486 -14.70711 -14.42520 -13.77004 -13.61400 -13.49123 -13.44584 -13.17781 -12.65305 -12.50926 -12.28869 -11.91223 -11.82487 -11.72970 -11.65723 -11.13720 -10.94011 -10.85006 -10.78262 -10.47839 -10.36540 -10.17114 -9.81701 -9.35409 -9.16586 -9.03569 -8.88787 -8.63090 -8.35586 -7.56176 -5.91762 -4.01448 3.26467 3.37060 3.42194 3.43513 3.71747 3.95063 4.17738 4.40961 4.49588 4.58309 4.84045 4.94818 5.02328 5.06040 5.15867 5.32004 5.37417 5.39142 5.50410 5.52985 5.61514 5.66073 5.73851 5.82415 5.97836 6.03089 6.15087 6.20478 6.35656 6.63602 6.72493 6.78390 6.85822 6.93180 7.04704 7.10954 7.42404 7.57967 7.81277 8.00152 8.13520 8.47388 8.67416 9.02028 9.35459 9.63769 11.12950 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.003976 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.404747 B = 7040.983713 C = 7735.595631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.468 5.468 3 C -0.005 4.005 4 C -0.135 4.135 5 C 0.013 3.987 6 H 0.081 0.919 7 C 0.158 3.842 8 N -0.755 5.755 9 C 0.700 3.300 10 O -0.582 6.582 11 N -0.624 5.624 12 C 0.117 3.883 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.892 3.108 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.129 3.871 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.386 0.614 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.123 0.877 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 19.656 -1.056 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.190 5.190 3 C -0.134 4.134 4 C -0.173 4.173 5 C -0.097 4.097 6 H 0.099 0.901 7 C 0.033 3.967 8 N -0.414 5.414 9 C 0.401 3.599 10 O -0.459 6.459 11 N -0.361 5.361 12 C -0.007 4.007 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.009 3.991 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.222 0.778 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.642 18.855 -1.576 19.481 hybrid contribution -0.898 -0.224 0.834 1.246 sum -5.540 18.630 -0.742 19.451 Atomic orbital electron populations 1.22918 0.89584 1.01156 1.02477 1.68977 1.09274 1.18681 1.22071 1.23797 0.97343 0.91533 1.00688 1.23146 0.97720 0.97477 0.98997 1.23719 0.97688 0.96275 0.92006 0.90081 1.21035 0.89380 0.84742 1.01586 1.45286 1.09130 1.07653 1.79373 1.15959 0.85350 0.80341 0.78253 1.90928 1.18647 1.77428 1.58890 1.47774 1.03567 1.13153 1.71572 1.21548 0.83356 0.96598 0.99222 1.22021 0.98469 0.97436 0.99212 1.21607 1.00415 0.93110 0.99549 1.18974 0.88924 0.93882 0.96179 0.95318 1.21037 0.92448 0.96851 1.45830 0.92493 1.25061 0.96199 0.97620 0.95140 1.69902 0.98475 1.36084 1.47007 0.86669 0.77001 0.85142 0.79231 1.20337 1.21276 1.20298 1.22162 1.05937 0.74740 0.96298 0.94616 0.90845 0.91426 0.89540 0.91397 0.90288 0.88239 0.90910 0.91550 0.77806 0.92255 0.92516 0.92149 0.92466 0.93108 0.93251 0.92621 0.85914 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.69 60.06 0.58 0.47 16 2 N -0.47 -4.87 6.52 -244.83 -1.60 -6.47 16 3 C 0.00 -0.04 7.70 -7.56 -0.06 -0.10 16 4 C -0.14 -1.07 8.01 -26.20 -0.21 -1.28 16 5 C 0.01 0.13 3.12 -71.44 -0.22 -0.09 16 6 H 0.08 0.71 7.91 -51.93 -0.41 0.30 16 7 C 0.16 2.19 5.69 -4.04 -0.02 2.16 16 8 N -0.75 -12.01 5.46 -65.22 -0.36 -12.37 16 9 C 0.70 15.01 8.30 -86.93 -0.72 14.29 16 10 O -0.58 -15.28 15.77 5.28 0.08 -15.19 16 11 N -0.62 -13.09 2.97 -178.23 -0.53 -13.62 16 12 C 0.12 1.88 6.42 -3.49 -0.02 1.86 16 13 C -0.13 -2.21 6.10 -26.39 -0.16 -2.37 16 14 C -0.11 -2.22 5.10 -26.69 -0.14 -2.36 16 15 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.52 -14.47 8.56 -34.44 -0.29 -14.76 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -26.26 11.39 55.43 0.63 -25.63 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.13 3.24 5.41 -3.71 -0.02 3.22 16 26 H 0.04 0.26 7.52 -51.93 -0.39 -0.13 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.62 6.86 -51.93 -0.36 0.26 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.44 7.54 -51.93 -0.39 0.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.39 5.14 4.68 -40.82 -0.19 4.95 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.73 5.64 -51.92 -0.29 0.44 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.12 3.62 5.11 -51.93 -0.27 3.35 16 44 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -33.16 341.75 -10.56 -43.72 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.33 Total: 4.29 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.59 Total: 3.53 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -1.85 Total: -58.09 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.08 Total: -15.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.16 -10.56 -43.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925429444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.755 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds