Wall clock time and date at job start Tue Mar 31 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47185 * 2 1 4 4 C 1.35969 * 126.07526 * 124.99956 * 3 2 1 5 5 C 1.35700 * 107.55171 * 180.02562 * 4 3 2 6 6 N 1.40803 * 126.06655 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00388 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46678 * 270.00101 * 7 6 5 9 9 C 1.53001 * 109.47324 * 65.00025 * 8 7 6 10 10 C 1.53004 * 109.46774 * 184.99588 * 8 7 6 11 11 C 1.46506 * 119.99687 * 0.02562 * 6 5 4 12 12 C 1.52998 * 109.46919 * 90.00258 * 11 6 5 13 13 H 1.09004 * 109.47223 * 59.99467 * 12 11 6 14 14 O 1.42910 * 109.47077 * 299.99758 * 12 11 6 15 15 C 1.50696 * 109.47188 * 180.02562 * 12 11 6 16 16 H 1.07995 * 120.00332 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99983 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00210 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.40213 * 107.86905 * 0.22880 * 5 4 3 24 24 N 1.30865 * 108.36564 * 359.61468 * 23 5 4 25 25 H 1.09005 * 109.46685 * 60.00457 * 1 2 3 26 26 H 1.09001 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46825 * 300.00503 * 1 2 3 28 28 H 1.09000 * 109.47178 * 239.99140 * 2 1 3 29 29 H 1.09005 * 109.47129 * 119.99838 * 2 1 3 30 30 H 1.08001 * 126.22079 * 0.04192 * 4 3 2 31 31 H 1.08999 * 109.46553 * 29.99800 * 7 6 5 32 32 H 1.08993 * 109.47336 * 150.00167 * 7 6 5 33 33 H 1.08991 * 109.46943 * 304.99696 * 8 7 6 34 34 H 1.08999 * 109.47162 * 179.97438 * 9 8 7 35 35 H 1.09007 * 109.46513 * 300.00070 * 9 8 7 36 36 H 1.08997 * 109.47388 * 59.99208 * 9 8 7 37 37 H 1.09000 * 109.47121 * 60.00250 * 10 8 7 38 38 H 1.08997 * 109.46943 * 179.97438 * 10 8 7 39 39 H 1.08996 * 109.47386 * 300.00257 * 10 8 7 40 40 H 1.08996 * 109.47200 * 330.00453 * 11 6 5 41 41 H 1.08997 * 109.47351 * 209.99862 * 11 6 5 42 42 H 0.96696 * 113.99416 * 300.00064 * 14 12 11 43 43 H 0.97000 * 119.99462 * 359.97438 * 18 17 15 44 44 H 1.07997 * 125.82179 * 179.74218 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8796 1.9259 0.9002 5 6 3.0749 3.2216 0.5474 6 7 3.8981 4.1478 1.2161 7 6 4.0116 5.5206 0.7175 8 6 5.1655 5.6056 -0.2838 9 6 4.8384 4.7544 -1.5124 10 6 5.3643 7.0615 -0.7103 11 6 4.6410 3.7385 2.4106 12 6 6.0139 3.2033 1.9988 13 1 6.5668 3.9844 1.4768 14 8 5.8467 2.0785 1.1332 15 6 6.7779 2.7817 3.2274 16 1 6.3294 2.8855 4.2043 17 6 8.0501 2.2644 3.1044 18 7 8.5966 2.1384 1.9148 19 14 8.9974 1.7425 4.6274 20 1 9.7833 2.8935 5.1401 21 1 8.0443 1.2893 5.6722 22 1 9.9178 0.6299 4.2808 23 6 2.3070 3.4761 -0.5978 24 7 1.6805 2.3754 -0.9272 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5140 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.3269 1.4194 1.7427 31 1 3.0819 5.8064 0.2256 32 1 4.2039 6.1954 1.5515 33 1 6.0787 5.2354 0.1820 34 1 5.6602 4.8154 -2.2258 35 1 4.6967 3.7172 -1.2084 36 1 3.9251 5.1245 -1.9781 37 1 5.5974 7.6679 0.1650 38 1 6.1866 7.1221 -1.4232 39 1 4.4511 7.4316 -1.1760 40 1 4.0882 2.9574 2.9325 41 1 4.7687 4.5963 3.0708 42 1 5.3619 1.3434 1.5329 43 1 8.1045 2.4091 1.1240 44 1 2.2448 4.4192 -1.1204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930659164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:36 Heat of formation + Delta-G solvation = 19.621238 kcal Electronic energy + Delta-G solvation = -23592.822244 eV Core-core repulsion = 20353.724537 eV Total energy + Delta-G solvation = -3239.097707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70037 -37.61114 -35.69292 -34.22598 -33.17199 -32.05170 -29.82361 -29.03984 -27.84350 -26.77446 -25.21081 -23.92379 -23.12462 -21.38600 -20.47955 -19.47484 -19.04698 -17.44436 -16.98932 -15.44644 -15.31598 -15.09415 -14.38862 -14.13104 -13.89965 -13.86459 -13.70730 -13.56540 -13.30904 -12.76042 -12.44386 -12.36570 -12.22517 -12.07194 -11.87319 -11.60491 -11.49302 -11.32768 -11.03625 -10.87263 -10.75313 -10.49071 -10.29513 -10.20377 -10.13587 -9.96738 -9.53889 -8.98533 -8.86888 -8.44429 -8.03189 -6.40487 -6.20490 -4.17838 2.33993 2.83866 3.40543 3.43122 3.48230 3.59307 3.95608 4.51669 4.72146 5.00908 5.14982 5.20112 5.28410 5.32575 5.36802 5.41124 5.47338 5.56550 5.70599 5.75497 5.85842 5.88462 5.94515 5.99846 6.03795 6.12380 6.17453 6.17901 6.28278 6.35616 6.44899 6.54257 6.62086 6.75149 6.82391 6.85306 7.43846 7.54548 7.84451 8.03963 8.22444 8.28522 8.39308 8.87193 9.19018 9.68848 11.06048 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.006288 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.694453 B = 4451.971162 C = 5951.197112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 N -0.375 5.375 4 C -0.029 4.029 5 C 0.094 3.906 6 N -0.615 5.615 7 C 0.148 3.852 8 C -0.121 4.121 9 C -0.139 4.139 10 C -0.143 4.143 11 C 0.116 3.884 12 C 0.199 3.801 13 H 0.050 0.950 14 O -0.569 6.569 15 C -0.653 4.653 16 H 0.048 0.952 17 C 0.036 3.964 18 N -0.892 5.892 19 Si 1.066 2.934 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.003 3.997 24 N -0.287 5.287 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.164 0.836 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.343 0.657 43 H 0.285 0.715 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 1.934 -3.058 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 N -0.165 5.165 4 C -0.175 4.175 5 C -0.013 4.013 6 N -0.331 5.331 7 C 0.023 3.977 8 C -0.141 4.141 9 C -0.196 4.196 10 C -0.201 4.201 11 C -0.007 4.007 12 C 0.141 3.859 13 H 0.068 0.932 14 O -0.373 6.373 15 C -0.691 4.691 16 H 0.066 0.934 17 C -0.173 4.173 18 N -0.527 5.527 19 Si 0.895 3.105 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.185 4.185 24 N -0.110 5.110 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.181 0.819 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.188 0.812 43 H 0.097 0.903 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.076 1.107 -3.703 12.679 hybrid contribution -0.921 0.751 0.602 1.332 sum -12.997 1.858 -3.101 13.490 Atomic orbital electron populations 1.22061 0.94572 1.02227 1.03254 1.21459 0.95179 0.78109 1.03298 1.48080 1.37452 1.09294 1.21655 1.21616 1.01894 0.94196 0.99774 1.17542 0.97947 0.90121 0.95665 1.45850 1.49767 1.07788 1.29732 1.21203 0.97008 0.83223 0.96262 1.21740 1.00518 0.94857 0.97022 1.21856 0.99675 1.01435 0.96635 1.21790 1.01069 0.96370 1.00902 1.22143 0.94311 0.99029 0.85231 1.20012 0.90238 0.85802 0.89879 0.93216 1.86549 1.79038 1.27405 1.44273 1.22470 1.03617 1.49682 0.93343 0.93408 1.25714 0.95276 0.93833 1.02468 1.70598 1.40990 1.41894 0.99200 0.83609 0.75680 0.76821 0.74385 1.21494 1.21573 1.21073 1.23462 0.99529 0.97771 0.97694 1.77017 1.23651 0.96460 1.13913 0.91390 0.91248 0.92314 0.90504 0.89054 0.81913 0.92328 0.91852 0.90245 0.93889 0.91099 0.93893 0.92994 0.92942 0.93185 0.92666 0.92004 0.81231 0.90289 0.81114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.10 37.16 0.38 -1.22 16 2 C 0.14 1.61 7.24 -4.04 -0.03 1.58 16 3 N -0.38 -5.79 3.71 -61.00 -0.23 -6.02 16 4 C -0.03 -0.48 9.41 -16.63 -0.16 -0.63 16 5 C 0.09 1.62 4.95 -83.90 -0.42 1.20 16 6 N -0.62 -10.70 2.43 -171.94 -0.42 -11.12 16 7 C 0.15 2.24 5.05 -4.04 -0.02 2.22 16 8 C -0.12 -1.91 3.13 -90.61 -0.28 -2.19 16 9 C -0.14 -2.22 7.76 37.16 0.29 -1.93 16 10 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 11 C 0.12 2.28 5.13 -4.04 -0.02 2.26 16 12 C 0.20 4.75 2.68 -27.89 -0.07 4.68 16 13 H 0.05 1.32 6.01 -51.93 -0.31 1.01 16 14 O -0.57 -13.80 10.74 -35.23 -0.38 -14.18 16 15 C -0.65 -17.46 8.76 -34.44 -0.30 -17.77 16 16 H 0.05 1.26 7.74 -52.49 -0.41 0.86 16 17 C 0.04 1.01 5.40 -17.82 -0.10 0.92 16 18 N -0.89 -26.90 13.53 55.43 0.75 -26.15 16 19 Si 1.07 24.64 29.90 -169.99 -5.08 19.56 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.00 0.05 9.24 -17.22 -0.16 -0.11 16 24 N -0.29 -4.79 12.41 30.70 0.38 -4.41 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.16 2.62 6.24 -52.49 -0.33 2.29 16 31 H 0.06 0.79 6.90 -51.93 -0.36 0.43 16 32 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 33 H 0.08 1.54 6.11 -51.93 -0.32 1.22 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.35 5.88 -51.92 -0.31 1.05 16 36 H 0.04 0.59 6.94 -51.93 -0.36 0.23 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 1.07 6.88 -51.93 -0.36 0.71 16 41 H 0.06 1.19 7.89 -51.93 -0.41 0.79 16 42 H 0.34 7.69 7.47 45.56 0.34 8.03 16 43 H 0.29 8.80 6.47 -40.82 -0.26 8.54 16 44 H 0.17 2.43 6.01 -52.49 -0.32 2.12 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -31.03 343.73 -6.75 -37.78 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.40 Total: 11.85 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -0.55 Total: -12.49 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.49 Total: -47.69 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.38 Total: -14.18 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.03 -6.75 -37.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930659164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.399 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds