Wall clock time and date at job start Tue Mar 31 2020 05:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 C 1.52995 * 109.47167 * 120.00209 * 2 1 3 5 5 N 1.46903 * 109.47353 * 63.72260 * 4 2 1 6 6 C 1.46908 * 110.99782 * 88.87195 * 5 4 2 7 7 C 1.50697 * 109.46844 * 286.63632 * 6 5 4 8 8 C 1.39871 * 126.03803 * 291.47141 * 7 6 5 9 9 N 1.30840 * 108.20310 * 179.82341 * 8 7 6 10 10 N 1.40086 * 108.20432 * 0.43673 * 9 8 7 11 11 C 1.46503 * 126.03820 * 179.69839 * 10 9 8 12 12 C 1.34952 * 107.92442 * 359.72154 * 10 9 8 13 13 C 1.46895 * 111.00341 * 212.82561 * 5 4 2 14 14 C 1.53000 * 109.47218 * 78.48320 * 13 5 4 15 15 H 1.08999 * 109.46597 * 52.18963 * 14 13 5 16 16 O 1.42895 * 109.47149 * 292.18796 * 14 13 5 17 17 C 1.50697 * 109.47139 * 172.18815 * 14 13 5 18 18 H 1.08006 * 120.00226 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99991 * 180.02562 * 17 14 13 20 20 N 1.31507 * 119.99863 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99863 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47243 * 89.99841 * 21 19 17 23 23 H 1.48502 * 109.46779 * 210.00052 * 21 19 17 24 24 H 1.48501 * 109.47363 * 329.99352 * 21 19 17 25 25 H 1.09007 * 109.47185 * 300.00320 * 1 2 3 26 26 H 1.09004 * 109.46921 * 59.99726 * 1 2 3 27 27 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47472 * 240.00047 * 2 1 3 29 29 H 1.09000 * 109.47069 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47481 * 299.99568 * 3 2 1 31 31 H 1.09004 * 109.47323 * 60.00283 * 3 2 1 32 32 H 1.09002 * 109.46996 * 303.72484 * 4 2 1 33 33 H 1.09004 * 109.47401 * 183.72547 * 4 2 1 34 34 H 1.09001 * 109.47216 * 46.63080 * 6 5 4 35 35 H 1.08996 * 109.47013 * 166.63618 * 6 5 4 36 36 H 1.07996 * 125.90358 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.47181 * 270.02643 * 11 10 9 38 38 H 1.09000 * 109.47064 * 30.02746 * 11 10 9 39 39 H 1.09004 * 109.46899 * 150.02931 * 11 10 9 40 40 H 1.08005 * 126.12422 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47028 * 198.48643 * 13 5 4 42 42 H 1.09005 * 109.46794 * 318.48758 * 13 5 4 43 43 H 0.96700 * 114.00105 * 299.99888 * 16 14 13 44 44 H 0.97003 * 120.00470 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6251 -2.1298 1.2051 6 6 2.6234 -2.9510 0.5071 7 6 2.5541 -2.6759 -0.9729 8 6 1.5014 -3.0229 -1.8260 9 7 1.8019 -2.6160 -3.0326 10 7 3.0617 -2.0050 -2.9873 11 6 3.7757 -1.4167 -4.1233 12 6 3.5018 -2.0547 -1.7125 13 6 1.3705 -2.6463 2.5564 14 6 -0.0015 -2.1674 3.0353 15 1 -0.7538 -2.4128 2.2858 16 8 0.0302 -0.7526 3.2332 17 6 -0.3459 -2.8488 4.3346 18 1 0.3448 -3.5526 4.7751 19 6 -1.5430 -2.5736 4.9612 20 7 -2.3838 -1.7162 4.4252 21 14 -1.9696 -3.4176 6.5721 22 1 -1.4725 -2.5988 7.7068 23 1 -3.4433 -3.5668 6.6775 24 1 -1.3323 -4.7583 6.6125 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6231 -0.2474 2.1379 33 1 3.1279 -0.6638 1.2832 34 1 3.6190 -2.7044 0.8762 35 1 2.4187 -4.0057 0.6906 36 1 0.5953 -3.5352 -1.5379 37 1 4.3987 -2.1771 -4.5942 38 1 3.0554 -1.0371 -4.8480 39 1 4.4043 -0.5980 -3.7727 40 1 4.4422 -1.6682 -1.3480 41 1 1.3891 -3.7359 2.5384 42 1 2.1404 -2.2808 3.2361 43 1 0.6787 -0.4615 3.8887 44 1 -3.2261 -1.5229 4.8657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930687434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:57 Heat of formation + Delta-G solvation = 29.072368 kcal Electronic energy + Delta-G solvation = -23391.281141 eV Core-core repulsion = 20152.593266 eV Total energy + Delta-G solvation = -3238.687875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09551 -37.88810 -35.21850 -33.97011 -32.98068 -32.04851 -30.59914 -28.37638 -27.32868 -26.49522 -25.49007 -24.80365 -22.27783 -20.89540 -20.20787 -19.93774 -19.35641 -16.87876 -16.67726 -15.56115 -15.05239 -14.74618 -14.48872 -14.44488 -14.16251 -13.76300 -13.63557 -13.30908 -12.98383 -12.79012 -12.72117 -12.55803 -12.34466 -11.98685 -11.64601 -11.34860 -11.16487 -11.02885 -10.88692 -10.74508 -10.71696 -10.44257 -10.23595 -10.19217 -9.87434 -9.84036 -9.22829 -8.94356 -8.50926 -8.21523 -7.91491 -7.45131 -5.93891 -4.11814 2.01915 2.62927 3.02954 3.30781 3.38315 3.40618 4.40579 4.52451 4.72424 4.92272 5.00792 5.22771 5.29798 5.32410 5.39091 5.49804 5.55654 5.68295 5.77848 5.87912 5.98380 6.01507 6.13321 6.17563 6.28456 6.31073 6.37439 6.43134 6.52450 6.62869 6.72882 6.76527 6.85579 6.93147 7.10114 7.11252 7.29670 7.69906 7.83540 7.83827 7.91030 8.09539 8.30100 8.92107 9.46429 9.65696 11.09672 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.004386 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.631499 B = 6382.885752 C = 6802.712207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.144 4.144 4 C 0.060 3.940 5 N -0.524 5.524 6 C 0.127 3.873 7 C -0.206 4.206 8 C 0.075 3.925 9 N -0.305 5.305 10 N -0.383 5.383 11 C 0.106 3.894 12 C 0.047 3.953 13 C 0.032 3.968 14 C 0.241 3.759 15 H 0.064 0.936 16 O -0.554 6.554 17 C -0.573 4.573 18 H 0.052 0.948 19 C 0.081 3.919 20 N -0.856 5.856 21 Si 0.885 3.115 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.015 0.985 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.182 0.818 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.164 0.836 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.336 0.664 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.462 1.957 -12.473 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.068 4.068 5 N -0.247 5.247 6 C -0.002 4.002 7 C -0.218 4.218 8 C -0.111 4.111 9 N -0.126 5.126 10 N -0.166 5.166 11 C -0.036 4.036 12 C -0.099 4.099 13 C -0.095 4.095 14 C 0.183 3.817 15 H 0.082 0.918 16 O -0.357 6.357 17 C -0.612 4.612 18 H 0.071 0.929 19 C -0.125 4.125 20 N -0.492 5.492 21 Si 0.713 3.287 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.199 0.801 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.182 0.818 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.180 0.820 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.065 2.127 -14.531 19.007 hybrid contribution 1.284 -0.462 2.621 2.955 sum 13.349 1.665 -11.910 17.967 Atomic orbital electron populations 1.21573 0.94341 1.02601 0.99797 1.21131 0.97090 0.93851 0.98548 1.21816 0.99565 0.97580 1.01238 1.22401 0.95561 0.88898 0.99932 1.61913 1.42621 1.01740 1.18418 1.20450 0.93484 0.97852 0.88398 1.20000 0.95851 1.09083 0.96872 1.23742 0.99345 0.98609 0.89413 1.77350 0.96080 1.16756 1.22449 1.48343 1.14774 1.46550 1.06958 1.21736 0.96357 0.97989 0.87485 1.22189 1.00495 1.02325 0.84916 1.23091 1.00641 0.99220 0.86578 1.19333 0.89333 0.78475 0.94548 0.91833 1.86617 1.62294 1.25295 1.61456 1.21676 1.03880 1.27121 1.08493 0.92930 1.24996 0.96030 0.94315 0.97130 1.70079 1.08904 1.32026 1.38177 0.86738 0.77574 0.80046 0.84353 1.20710 1.21205 1.19929 0.92206 0.95632 0.91607 0.91445 0.94030 0.93650 0.92717 0.88800 0.96667 0.95308 0.90701 0.80101 0.91282 0.89596 0.89942 0.81832 0.91721 0.96116 0.82029 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.07 37.15 0.34 -1.96 16 2 C -0.09 -1.38 2.89 -90.63 -0.26 -1.65 16 3 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 4 C 0.06 0.99 4.07 -3.82 -0.02 0.97 16 5 N -0.52 -9.03 3.68 -236.07 -0.87 -9.90 16 6 C 0.13 1.86 5.45 -4.97 -0.03 1.83 16 7 C -0.21 -2.87 3.60 -105.05 -0.38 -3.25 16 8 C 0.08 1.12 11.80 -17.36 -0.20 0.92 16 9 N -0.31 -4.58 12.58 30.62 0.39 -4.19 16 10 N -0.38 -4.68 4.01 -68.16 -0.27 -4.96 16 11 C 0.11 0.81 11.47 59.85 0.69 1.50 16 12 C 0.05 0.56 10.13 -17.22 -0.17 0.39 16 13 C 0.03 0.63 4.70 -3.83 -0.02 0.62 16 14 C 0.24 5.87 3.04 -27.88 -0.08 5.78 16 15 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 16 O -0.55 -13.41 10.24 -35.23 -0.36 -13.77 16 17 C -0.57 -15.39 8.75 -34.44 -0.30 -15.70 16 18 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 20 N -0.86 -25.07 12.84 55.43 0.71 -24.36 16 21 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.33 7.71 -51.93 -0.40 0.93 16 28 H 0.07 1.08 4.59 -51.93 -0.24 0.84 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.74 4.97 -51.93 -0.26 1.48 16 33 H 0.02 0.23 7.52 -51.93 -0.39 -0.16 16 34 H 0.03 0.39 7.66 -51.93 -0.40 0.00 16 35 H 0.07 1.08 7.62 -51.93 -0.40 0.69 16 36 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 41 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 42 H 0.02 0.40 7.96 -51.93 -0.41 -0.01 16 43 H 0.34 7.40 8.63 45.56 0.39 7.79 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -30.97 353.32 -6.98 -37.95 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.68 Total: 7.92 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.20 Total: -10.04 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.05 Total: -43.41 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.36 Total: -13.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.97 -6.98 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930687434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.027 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds