Wall clock time and date at job start Tue Mar 31 2020 05:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47212 * 2 1 4 4 C 1.52995 * 109.47167 * 120.00209 * 2 1 3 5 5 N 1.46903 * 109.47353 * 63.72260 * 4 2 1 6 6 C 1.46908 * 110.99782 * 88.87195 * 5 4 2 7 7 C 1.50697 * 109.46844 * 286.63632 * 6 5 4 8 8 C 1.39871 * 126.03803 * 291.47141 * 7 6 5 9 9 N 1.30840 * 108.20310 * 179.82341 * 8 7 6 10 10 N 1.40086 * 108.20432 * 0.43673 * 9 8 7 11 11 C 1.46503 * 126.03820 * 179.69839 * 10 9 8 12 12 C 1.34952 * 107.92442 * 359.72154 * 10 9 8 13 13 C 1.46895 * 111.00341 * 212.82561 * 5 4 2 14 14 C 1.53000 * 109.47218 * 78.48320 * 13 5 4 15 15 H 1.08999 * 109.46597 * 52.18963 * 14 13 5 16 16 O 1.42895 * 109.47149 * 292.18796 * 14 13 5 17 17 C 1.50697 * 109.47139 * 172.18815 * 14 13 5 18 18 H 1.08006 * 120.00226 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99991 * 180.02562 * 17 14 13 20 20 N 1.31507 * 119.99863 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99863 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47243 * 89.99841 * 21 19 17 23 23 H 1.48502 * 109.46779 * 210.00052 * 21 19 17 24 24 H 1.48501 * 109.47363 * 329.99352 * 21 19 17 25 25 H 1.09007 * 109.47185 * 300.00320 * 1 2 3 26 26 H 1.09004 * 109.46921 * 59.99726 * 1 2 3 27 27 H 1.09001 * 109.47376 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47472 * 240.00047 * 2 1 3 29 29 H 1.09000 * 109.47069 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47481 * 299.99568 * 3 2 1 31 31 H 1.09004 * 109.47323 * 60.00283 * 3 2 1 32 32 H 1.09002 * 109.46996 * 303.72484 * 4 2 1 33 33 H 1.09004 * 109.47401 * 183.72547 * 4 2 1 34 34 H 1.09001 * 109.47216 * 46.63080 * 6 5 4 35 35 H 1.08996 * 109.47013 * 166.63618 * 6 5 4 36 36 H 1.07996 * 125.90358 * 0.02562 * 8 7 6 37 37 H 1.09000 * 109.47181 * 270.02643 * 11 10 9 38 38 H 1.09000 * 109.47064 * 30.02746 * 11 10 9 39 39 H 1.09004 * 109.46899 * 150.02931 * 11 10 9 40 40 H 1.08005 * 126.12422 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47028 * 198.48643 * 13 5 4 42 42 H 1.09005 * 109.46794 * 318.48758 * 13 5 4 43 43 H 0.96700 * 114.00105 * 299.99888 * 16 14 13 44 44 H 0.97003 * 120.00470 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6251 -2.1298 1.2051 6 6 2.6234 -2.9510 0.5071 7 6 2.5541 -2.6759 -0.9729 8 6 1.5014 -3.0229 -1.8260 9 7 1.8019 -2.6160 -3.0326 10 7 3.0617 -2.0050 -2.9873 11 6 3.7757 -1.4167 -4.1233 12 6 3.5018 -2.0547 -1.7125 13 6 1.3705 -2.6463 2.5564 14 6 -0.0015 -2.1674 3.0353 15 1 -0.7538 -2.4128 2.2858 16 8 0.0302 -0.7526 3.2332 17 6 -0.3459 -2.8488 4.3346 18 1 0.3448 -3.5526 4.7751 19 6 -1.5430 -2.5736 4.9612 20 7 -2.3838 -1.7162 4.4252 21 14 -1.9696 -3.4176 6.5721 22 1 -1.4725 -2.5988 7.7068 23 1 -3.4433 -3.5668 6.6775 24 1 -1.3323 -4.7583 6.6125 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6231 -0.2474 2.1379 33 1 3.1279 -0.6638 1.2832 34 1 3.6190 -2.7044 0.8762 35 1 2.4187 -4.0057 0.6906 36 1 0.5953 -3.5352 -1.5379 37 1 4.3987 -2.1771 -4.5942 38 1 3.0554 -1.0371 -4.8480 39 1 4.4043 -0.5980 -3.7727 40 1 4.4422 -1.6682 -1.3480 41 1 1.3891 -3.7359 2.5384 42 1 2.1404 -2.2808 3.2361 43 1 0.6787 -0.4615 3.8887 44 1 -3.2261 -1.5229 4.8657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930687434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:57 Heat of formation + Delta-G solvation = 7.801620 kcal Electronic energy + Delta-G solvation = -23392.203510 eV Core-core repulsion = 20152.593266 eV Total energy + Delta-G solvation = -3239.610244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09795 -39.34620 -36.97613 -35.25104 -34.17777 -33.93171 -31.79183 -30.03108 -28.31792 -27.82441 -27.02693 -26.17738 -23.79815 -22.02228 -21.77206 -21.00355 -20.64779 -18.89926 -17.62611 -16.77242 -16.60003 -16.29763 -16.17602 -15.81190 -15.26506 -15.20021 -15.04897 -14.58091 -14.36399 -14.23522 -13.75031 -13.50588 -13.41888 -13.27067 -13.00784 -12.90041 -12.87557 -12.80074 -12.56499 -12.33495 -12.17928 -11.98536 -11.66869 -11.44662 -11.32935 -11.25206 -10.90806 -10.63409 -10.21075 -9.90333 -9.10185 -8.84481 -8.05090 -6.30380 1.05963 1.42701 1.43896 1.53971 1.81109 1.93566 2.43577 3.20326 3.34311 3.80271 4.06594 4.15436 4.26213 4.30884 4.41916 4.42992 4.48847 4.50581 4.58162 4.62972 4.74235 4.79640 4.83696 4.89777 4.92300 4.98817 5.08211 5.15985 5.18203 5.23783 5.29493 5.31536 5.42211 5.65792 5.69322 5.77875 5.78808 5.91678 6.15292 6.26486 6.51182 6.58154 6.84803 6.86532 7.42464 7.67938 8.98080 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026746 B = 0.004386 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.631499 B = 6382.885752 C = 6802.712207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 C -0.139 4.139 4 C 0.064 3.936 5 N -0.536 5.536 6 C 0.132 3.868 7 C -0.226 4.226 8 C 0.057 3.943 9 N -0.336 5.336 10 N -0.379 5.379 11 C 0.095 3.905 12 C 0.064 3.936 13 C 0.051 3.949 14 C 0.247 3.753 15 H 0.017 0.983 16 O -0.563 6.563 17 C -0.585 4.585 18 H 0.057 0.943 19 C 0.028 3.972 20 N -0.897 5.897 21 Si 0.954 3.046 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.170 0.830 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.201 0.799 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.346 0.654 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.368 2.328 -12.783 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.063 4.063 5 N -0.260 5.260 6 C 0.004 3.996 7 C -0.238 4.238 8 C -0.128 4.128 9 N -0.158 5.158 10 N -0.162 5.162 11 C -0.045 4.045 12 C -0.084 4.084 13 C -0.077 4.077 14 C 0.189 3.811 15 H 0.035 0.965 16 O -0.367 6.367 17 C -0.623 4.623 18 H 0.075 0.925 19 C -0.174 4.174 20 N -0.535 5.535 21 Si 0.779 3.221 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.187 0.813 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.218 0.782 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.190 0.810 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.992 2.492 -14.862 21.256 hybrid contribution 0.419 -0.545 2.600 2.689 sum 15.411 1.947 -12.261 19.789 Atomic orbital electron populations 1.21442 0.96713 1.00334 0.98789 1.21067 0.94813 0.95474 0.98415 1.21759 1.01052 0.95632 1.01211 1.22324 0.96635 0.88187 0.99196 1.61794 1.44671 1.02598 1.16924 1.20403 0.93407 0.97102 0.88676 1.19938 0.96519 1.10920 0.96432 1.23717 0.99703 0.99322 0.90092 1.77286 0.98027 1.17968 1.22525 1.48722 1.13858 1.45320 1.08252 1.22139 0.96537 0.99330 0.86463 1.22662 1.00874 1.00427 0.84434 1.22657 0.97863 0.98963 0.88250 1.19059 0.90889 0.78517 0.92642 0.96469 1.86576 1.63044 1.25167 1.61872 1.22110 1.03980 1.26970 1.09289 0.92455 1.25823 0.96008 0.94931 1.00632 1.70230 1.09383 1.33918 1.39930 0.85652 0.77072 0.79248 0.80111 1.19942 1.21311 1.18995 0.94894 0.94762 0.94482 0.90926 0.91581 0.92896 0.93602 0.91010 0.94411 0.93330 0.91128 0.81285 0.89565 0.89647 0.86890 0.78215 0.91777 0.95291 0.80955 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 9.07 71.98 0.65 -3.68 16 2 C -0.08 -2.40 2.89 -10.80 -0.03 -2.44 16 3 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 4 C 0.06 2.04 4.07 86.30 0.35 2.39 16 5 N -0.54 -18.36 3.68 -900.79 -3.32 -21.67 16 6 C 0.13 3.67 5.45 85.55 0.47 4.14 16 7 C -0.23 -5.96 3.60 -20.14 -0.07 -6.03 16 8 C 0.06 1.71 11.80 85.24 1.01 2.72 16 9 N -0.34 -9.85 12.58 -57.02 -0.72 -10.57 16 10 N -0.38 -8.24 4.01 -369.55 -1.48 -9.72 16 11 C 0.10 1.12 11.47 127.77 1.47 2.58 16 12 C 0.06 1.31 10.13 83.54 0.85 2.16 16 13 C 0.05 2.01 4.70 86.30 0.41 2.41 16 14 C 0.25 12.43 3.04 29.85 0.09 12.52 16 15 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 16 O -0.56 -28.15 10.24 -148.98 -1.52 -29.67 16 17 C -0.59 -31.88 8.75 25.60 0.22 -31.65 16 18 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 19 C 0.03 1.59 5.40 84.66 0.46 2.05 16 20 N -0.90 -54.09 12.84 21.45 0.28 -53.81 16 21 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H 0.03 1.37 8.03 -2.38 -0.02 1.36 16 26 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.04 1.57 7.71 -2.39 -0.02 1.55 16 28 H 0.07 2.18 4.59 -2.39 -0.01 2.17 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 2.63 4.97 -2.39 -0.01 2.62 16 33 H 0.04 1.04 7.52 -2.39 -0.02 1.02 16 34 H 0.05 1.16 7.66 -2.39 -0.02 1.15 16 35 H 0.07 1.99 7.62 -2.39 -0.02 1.97 16 36 H 0.17 5.22 8.06 -2.91 -0.02 5.20 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 41 H 0.06 2.51 7.56 -2.39 -0.02 2.49 16 42 H 0.03 1.09 7.96 -2.38 -0.02 1.07 16 43 H 0.35 15.52 8.63 -74.06 -0.64 14.89 16 44 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -68.90 353.32 2.12 -66.78 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.33 Total: 28.73 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 6.52 Total: -15.66 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -5.24 Total: -95.78 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.52 Total: -29.67 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.90 2.12 -66.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930687434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.587 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds