Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47003 * 2 1 4 4 C 1.34951 * 126.03971 * 125.00199 * 3 2 1 5 5 C 1.35316 * 107.74522 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.03553 * 179.97438 * 5 4 3 7 7 N 1.46910 * 109.46723 * 95.50618 * 6 5 4 8 8 C 1.46900 * 111.00010 * 284.03992 * 7 6 5 9 9 C 1.52996 * 109.46995 * 170.00027 * 8 7 6 10 10 H 1.08999 * 109.47329 * 59.99333 * 9 8 7 11 11 O 1.42900 * 109.47104 * 299.99992 * 9 8 7 12 12 C 1.50697 * 109.47324 * 180.02562 * 9 8 7 13 13 H 1.08008 * 119.99729 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00422 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99911 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00251 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47235 * 270.00072 * 16 14 12 18 18 H 1.48499 * 109.47128 * 30.00724 * 16 14 12 19 19 H 1.48505 * 109.47161 * 150.00317 * 16 14 12 20 20 C 1.46894 * 110.99700 * 160.08155 * 7 6 5 21 21 C 1.52994 * 109.47584 * 293.41769 * 20 7 6 22 22 C 1.53001 * 109.47027 * 53.41955 * 20 7 6 23 23 C 1.39867 * 107.92148 * 0.26273 * 5 4 3 24 24 N 1.30831 * 108.20163 * 359.55302 * 23 5 4 25 25 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47033 * 300.00186 * 1 2 3 27 27 H 1.08996 * 109.46825 * 60.00024 * 1 2 3 28 28 H 1.08998 * 109.47604 * 239.99395 * 2 1 3 29 29 H 1.09009 * 109.47062 * 119.99781 * 2 1 3 30 30 H 1.08003 * 126.12689 * 0.03474 * 4 3 2 31 31 H 1.08997 * 109.47517 * 335.51278 * 6 5 4 32 32 H 1.08990 * 109.46913 * 215.50351 * 6 5 4 33 33 H 1.09003 * 109.47033 * 49.99950 * 8 7 6 34 34 H 1.08996 * 109.46828 * 290.00117 * 8 7 6 35 35 H 0.96703 * 114.00467 * 300.00299 * 11 9 8 36 36 H 0.97000 * 119.99629 * 359.97438 * 15 14 12 37 37 H 1.08999 * 109.46980 * 173.41401 * 20 7 6 38 38 H 1.08998 * 109.47309 * 60.57689 * 21 20 7 39 39 H 1.09007 * 109.47269 * 180.57432 * 21 20 7 40 40 H 1.09001 * 109.46910 * 300.57608 * 21 20 7 41 41 H 1.09004 * 109.47299 * 59.99505 * 22 20 7 42 42 H 1.08995 * 109.47467 * 179.97438 * 22 20 7 43 43 H 1.08999 * 109.46789 * 299.99563 * 22 20 7 44 44 H 1.08002 * 125.89501 * 179.73037 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0712 3.2138 0.5463 6 6 3.9539 4.2003 1.2665 7 7 5.2733 4.2387 0.6214 8 6 6.0682 3.0559 0.9779 9 6 7.3224 3.0019 0.1034 10 1 7.9167 3.9013 0.2646 11 8 6.9413 2.9230 -1.2716 12 6 8.1376 1.7882 0.4686 13 1 7.7955 1.1222 1.2470 14 6 9.3201 1.5280 -0.1909 15 7 9.7369 2.3392 -1.1384 16 14 10.3309 0.0239 0.2624 17 1 11.2954 0.3802 1.3338 18 1 9.4285 -1.0516 0.7462 19 1 11.0725 -0.4526 -0.9328 20 6 5.9891 5.4758 0.9603 21 6 5.2606 6.6718 0.3441 22 6 6.0378 5.6366 2.4811 23 6 2.3068 3.4744 -0.5957 24 7 1.6800 2.3750 -0.9276 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.3193 1.4126 1.7357 31 1 4.0670 3.8948 2.3067 32 1 3.5006 5.1906 1.2258 33 1 5.4738 2.1566 0.8167 34 1 6.3588 3.1161 2.0267 35 1 6.4087 2.1454 -1.4882 36 1 9.2122 3.1204 -1.3734 37 1 7.0046 5.4272 0.5675 38 1 4.2483 6.7264 0.7447 39 1 5.7974 7.5889 0.5871 40 1 5.2169 6.5522 -0.7384 41 1 6.5568 4.7846 2.9201 42 1 6.5693 6.5544 2.7326 43 1 5.0222 5.6852 2.8739 44 1 2.2468 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930859632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = 22.944258 kcal Electronic energy + Delta-G solvation = -23134.036700 eV Core-core repulsion = 19895.083090 eV Total energy + Delta-G solvation = -3238.953610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02069 -38.32196 -35.45981 -34.47201 -32.02211 -31.86567 -30.19634 -29.92059 -27.62012 -26.85210 -25.15832 -23.71950 -23.25276 -21.43667 -20.47688 -20.14154 -18.66527 -17.25532 -16.79429 -15.59073 -15.43865 -15.05274 -14.66300 -14.22087 -13.99113 -13.80226 -13.69636 -13.42171 -13.21602 -12.79135 -12.74410 -12.49552 -12.22499 -12.18783 -12.01676 -11.69811 -11.53261 -11.45728 -11.15432 -10.92173 -10.79150 -10.51731 -10.32485 -10.27110 -10.11695 -9.88850 -9.20624 -9.05469 -8.40720 -8.18755 -7.92021 -7.52906 -6.29924 -4.12787 2.09372 2.64543 3.04082 3.41875 3.45252 3.61278 4.44382 4.50689 4.65753 4.82019 4.94707 5.06466 5.18976 5.26672 5.35874 5.38721 5.41827 5.47673 5.58747 5.67113 5.71159 5.81815 5.85239 5.90527 6.00597 6.05121 6.11745 6.14917 6.22379 6.28164 6.37246 6.44902 6.57254 6.70119 6.81187 6.88579 7.19170 7.52642 7.70774 7.81828 7.92410 8.11122 8.41429 8.91752 9.31914 9.73819 11.10176 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012848 B = 0.005719 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.857268 B = 4894.636602 C = 6407.467236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 N -0.375 5.375 4 C 0.056 3.944 5 C -0.214 4.214 6 C 0.127 3.873 7 N -0.515 5.515 8 C 0.040 3.960 9 C 0.222 3.778 10 H 0.046 0.954 11 O -0.569 6.569 12 C -0.650 4.650 13 H 0.045 0.955 14 C 0.035 3.965 15 N -0.894 5.894 16 Si 1.067 2.933 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.073 3.927 21 C -0.139 4.139 22 C -0.185 4.185 23 C 0.067 3.933 24 N -0.303 5.303 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.349 0.651 36 H 0.285 0.715 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.893 0.806 6.292 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.158 5.158 4 C -0.091 4.091 5 C -0.226 4.226 6 C -0.002 4.002 7 N -0.238 5.238 8 C -0.088 4.088 9 C 0.164 3.836 10 H 0.063 0.937 11 O -0.372 6.372 12 C -0.688 4.688 13 H 0.064 0.936 14 C -0.174 4.174 15 N -0.528 5.528 16 Si 0.896 3.104 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.210 1.210 20 C -0.035 4.035 21 C -0.196 4.196 22 C -0.244 4.244 23 C -0.119 4.119 24 N -0.124 5.124 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.183 0.817 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.101 -0.147 4.558 15.775 hybrid contribution -0.888 0.501 2.103 2.338 sum -15.990 0.354 6.661 17.325 Atomic orbital electron populations 1.22040 0.94111 1.02525 1.03388 1.21612 0.95686 0.77984 1.03702 1.48528 1.36114 1.09905 1.21294 1.22292 0.95532 0.94659 0.96574 1.19946 1.06238 0.94979 1.01387 1.20334 0.89346 0.96746 0.93750 1.62214 1.01799 1.01890 1.57918 1.22877 0.96588 0.91368 0.97945 1.19464 0.88705 0.96545 0.78860 0.93668 1.86456 1.73933 1.47870 1.28983 1.22472 1.09894 1.12093 1.24383 0.93631 1.25715 0.95868 1.02136 0.93663 1.70590 1.41131 1.14057 1.27066 0.83603 0.75652 0.75120 0.76054 1.21499 1.21672 1.20986 1.21708 0.99192 0.90050 0.92576 1.21820 0.99543 0.96500 1.01774 1.22488 1.01348 1.01938 0.98581 1.23650 0.95399 0.97172 0.95705 1.77243 1.24828 0.96829 1.13507 0.90979 0.92310 0.91153 0.89898 0.88940 0.81741 0.95072 0.90600 0.91960 0.95573 0.80678 0.90281 0.89397 0.93164 0.93001 0.91815 0.92408 0.92661 0.92967 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.10 37.16 0.38 -1.01 16 2 C 0.13 1.31 7.23 -4.04 -0.03 1.29 16 3 N -0.38 -5.20 3.68 -61.36 -0.23 -5.42 16 4 C 0.06 0.79 10.38 -17.22 -0.18 0.61 16 5 C -0.21 -3.21 5.16 -105.05 -0.54 -3.76 16 6 C 0.13 1.87 4.05 -4.97 -0.02 1.85 16 7 N -0.51 -9.07 4.23 -228.09 -0.97 -10.04 16 8 C 0.04 0.82 4.27 -3.83 -0.02 0.80 16 9 C 0.22 5.60 2.32 -27.89 -0.06 5.53 16 10 H 0.05 1.24 6.22 -51.93 -0.32 0.92 16 11 O -0.57 -14.90 11.88 -35.23 -0.42 -15.31 16 12 C -0.65 -18.12 8.76 -34.44 -0.30 -18.42 16 13 H 0.05 1.25 7.74 -52.48 -0.41 0.85 16 14 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 15 N -0.89 -27.55 13.53 55.43 0.75 -26.80 16 16 Si 1.07 25.21 29.90 -169.99 -5.08 20.12 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.07 1.21 2.79 -67.72 -0.19 1.02 16 21 C -0.14 -1.92 9.16 37.15 0.34 -1.58 16 22 C -0.18 -2.67 8.52 37.16 0.32 -2.35 16 23 C 0.07 1.02 11.96 -17.37 -0.21 0.81 16 24 N -0.30 -4.76 12.42 30.62 0.38 -4.38 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.72 8.07 -51.92 -0.42 0.30 16 30 H 0.17 2.00 8.06 -52.48 -0.42 1.57 16 31 H 0.03 0.45 7.33 -51.93 -0.38 0.07 16 32 H 0.08 1.02 5.88 -51.93 -0.31 0.71 16 33 H 0.06 1.29 6.66 -51.93 -0.35 0.95 16 34 H 0.03 0.54 6.43 -51.93 -0.33 0.21 16 35 H 0.35 8.64 9.04 45.56 0.41 9.05 16 36 H 0.29 8.99 6.47 -40.82 -0.26 8.72 16 37 H 0.09 1.72 6.07 -51.93 -0.32 1.41 16 38 H 0.05 0.62 6.29 -51.93 -0.33 0.29 16 39 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.92 6.60 -51.93 -0.34 0.58 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.67 6.75 -51.93 -0.35 0.32 16 44 H 0.18 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -32.58 349.73 -7.21 -39.78 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.30 Total: 11.08 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.61 Total: -14.30 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.06 Total: -46.64 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.42 Total: -15.31 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.58 -7.21 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930859632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.728 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds