Wall clock time and date at job start Tue Mar 31 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47003 * 2 1 4 4 C 1.34951 * 126.03971 * 125.00199 * 3 2 1 5 5 C 1.35316 * 107.74522 * 180.02562 * 4 3 2 6 6 C 1.50707 * 126.03553 * 179.97438 * 5 4 3 7 7 N 1.46910 * 109.46723 * 95.50618 * 6 5 4 8 8 C 1.46900 * 111.00010 * 284.03992 * 7 6 5 9 9 C 1.52996 * 109.46995 * 170.00027 * 8 7 6 10 10 H 1.08999 * 109.47329 * 59.99333 * 9 8 7 11 11 O 1.42900 * 109.47104 * 299.99992 * 9 8 7 12 12 C 1.50697 * 109.47324 * 180.02562 * 9 8 7 13 13 H 1.08008 * 119.99729 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00422 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99911 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00251 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47235 * 270.00072 * 16 14 12 18 18 H 1.48499 * 109.47128 * 30.00724 * 16 14 12 19 19 H 1.48505 * 109.47161 * 150.00317 * 16 14 12 20 20 C 1.46894 * 110.99700 * 160.08155 * 7 6 5 21 21 C 1.52994 * 109.47584 * 293.41769 * 20 7 6 22 22 C 1.53001 * 109.47027 * 53.41955 * 20 7 6 23 23 C 1.39867 * 107.92148 * 0.26273 * 5 4 3 24 24 N 1.30831 * 108.20163 * 359.55302 * 23 5 4 25 25 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47033 * 300.00186 * 1 2 3 27 27 H 1.08996 * 109.46825 * 60.00024 * 1 2 3 28 28 H 1.08998 * 109.47604 * 239.99395 * 2 1 3 29 29 H 1.09009 * 109.47062 * 119.99781 * 2 1 3 30 30 H 1.08003 * 126.12689 * 0.03474 * 4 3 2 31 31 H 1.08997 * 109.47517 * 335.51278 * 6 5 4 32 32 H 1.08990 * 109.46913 * 215.50351 * 6 5 4 33 33 H 1.09003 * 109.47033 * 49.99950 * 8 7 6 34 34 H 1.08996 * 109.46828 * 290.00117 * 8 7 6 35 35 H 0.96703 * 114.00467 * 300.00299 * 11 9 8 36 36 H 0.97000 * 119.99629 * 359.97438 * 15 14 12 37 37 H 1.08999 * 109.46980 * 173.41401 * 20 7 6 38 38 H 1.08998 * 109.47309 * 60.57689 * 21 20 7 39 39 H 1.09007 * 109.47269 * 180.57432 * 21 20 7 40 40 H 1.09001 * 109.46910 * 300.57608 * 21 20 7 41 41 H 1.09004 * 109.47299 * 59.99505 * 22 20 7 42 42 H 1.08995 * 109.47467 * 179.97438 * 22 20 7 43 43 H 1.08999 * 109.46789 * 299.99563 * 22 20 7 44 44 H 1.08002 * 125.89501 * 179.73037 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0712 3.2138 0.5463 6 6 3.9539 4.2003 1.2665 7 7 5.2733 4.2387 0.6214 8 6 6.0682 3.0559 0.9779 9 6 7.3224 3.0019 0.1034 10 1 7.9167 3.9013 0.2646 11 8 6.9413 2.9230 -1.2716 12 6 8.1376 1.7882 0.4686 13 1 7.7955 1.1222 1.2470 14 6 9.3201 1.5280 -0.1909 15 7 9.7369 2.3392 -1.1384 16 14 10.3309 0.0239 0.2624 17 1 11.2954 0.3802 1.3338 18 1 9.4285 -1.0516 0.7462 19 1 11.0725 -0.4526 -0.9328 20 6 5.9891 5.4758 0.9603 21 6 5.2606 6.6718 0.3441 22 6 6.0378 5.6366 2.4811 23 6 2.3068 3.4744 -0.5957 24 7 1.6800 2.3750 -0.9276 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.3193 1.4126 1.7357 31 1 4.0670 3.8948 2.3067 32 1 3.5006 5.1906 1.2258 33 1 5.4738 2.1566 0.8167 34 1 6.3588 3.1161 2.0267 35 1 6.4087 2.1454 -1.4882 36 1 9.2122 3.1204 -1.3734 37 1 7.0046 5.4272 0.5675 38 1 4.2483 6.7264 0.7447 39 1 5.7974 7.5889 0.5871 40 1 5.2169 6.5522 -0.7384 41 1 6.5568 4.7846 2.9201 42 1 6.5693 6.5544 2.7326 43 1 5.0222 5.6852 2.8739 44 1 2.2468 4.4192 -1.1155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930859632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:33 Heat of formation + Delta-G solvation = -0.319534 kcal Electronic energy + Delta-G solvation = -23135.045494 eV Core-core repulsion = 19895.083090 eV Total energy + Delta-G solvation = -3239.962404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10656 -39.77580 -37.39859 -35.37574 -34.20221 -33.12645 -31.57495 -30.99722 -29.17485 -28.03984 -26.70312 -25.07928 -24.47463 -23.21646 -21.54913 -21.31975 -20.00408 -19.33968 -17.91492 -17.04842 -16.75280 -16.33211 -16.18335 -15.72947 -15.45166 -15.17202 -15.10856 -14.71290 -14.61227 -14.21491 -14.04112 -13.80837 -13.59152 -13.28436 -13.07670 -12.94370 -12.84660 -12.63387 -12.56222 -12.24794 -12.17410 -12.10845 -11.94217 -11.88583 -11.53504 -11.41514 -11.00475 -10.58370 -10.28080 -10.01948 -9.29173 -8.92415 -8.58615 -6.43037 1.01046 1.51603 1.60494 1.69954 1.77707 1.89387 2.56527 3.18737 3.26052 3.63573 3.96772 3.99717 4.08023 4.09971 4.17662 4.19854 4.27728 4.37464 4.43179 4.45777 4.52675 4.61847 4.71653 4.80715 4.81144 4.85914 4.92753 4.92841 4.99387 5.04751 5.16187 5.22306 5.24877 5.32629 5.46616 5.54996 5.78962 5.89217 6.12889 6.19787 6.35121 6.44338 6.60035 6.82296 7.26145 7.54781 8.78609 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012848 B = 0.005719 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.857268 B = 4894.636602 C = 6407.467236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.119 3.881 3 N -0.375 5.375 4 C 0.054 3.946 5 C -0.232 4.232 6 C 0.134 3.866 7 N -0.525 5.525 8 C 0.062 3.938 9 C 0.222 3.778 10 H 0.016 0.984 11 O -0.581 6.581 12 C -0.657 4.657 13 H 0.049 0.951 14 C -0.018 4.018 15 N -0.923 5.923 16 Si 1.116 2.884 17 H -0.273 1.273 18 H -0.269 1.269 19 H -0.286 1.286 20 C 0.069 3.931 21 C -0.130 4.130 22 C -0.175 4.175 23 C 0.056 3.944 24 N -0.329 5.329 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.185 0.815 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.353 0.647 36 H 0.267 0.733 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.122 -0.038 7.964 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.000 4.000 3 N -0.158 5.158 4 C -0.093 4.093 5 C -0.244 4.244 6 C 0.006 3.994 7 N -0.249 5.249 8 C -0.066 4.066 9 C 0.164 3.836 10 H 0.034 0.966 11 O -0.384 6.384 12 C -0.695 4.695 13 H 0.067 0.933 14 C -0.219 4.219 15 N -0.559 5.559 16 Si 0.938 3.062 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.212 1.212 20 C -0.040 4.040 21 C -0.187 4.187 22 C -0.234 4.234 23 C -0.129 4.129 24 N -0.151 5.151 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.137 0.863 30 H 0.202 0.798 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.198 0.802 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -16.367 -0.986 6.240 17.544 hybrid contribution -0.561 0.768 1.574 1.839 sum -16.929 -0.218 7.814 18.646 Atomic orbital electron populations 1.21974 0.92997 1.03934 1.02259 1.21996 0.96688 0.76359 1.04999 1.48873 1.35651 1.10734 1.20554 1.22663 0.95120 0.94645 0.96909 1.20065 1.06867 0.95629 1.01857 1.20341 0.87401 0.97879 0.93786 1.62131 1.02711 1.01088 1.58933 1.22412 0.94784 0.92952 0.96472 1.19364 0.90556 0.94398 0.79252 0.96618 1.86424 1.74174 1.48084 1.29765 1.22875 1.10148 1.12629 1.23881 0.93299 1.27257 0.97513 1.04227 0.92941 1.70742 1.41476 1.14532 1.29163 0.82973 0.74867 0.72244 0.76124 1.19879 1.19340 1.21233 1.21712 0.97364 0.90672 0.94217 1.21747 1.00634 0.95786 1.00564 1.22384 1.02645 1.01784 0.96588 1.23927 0.95404 0.97645 0.95961 1.77190 1.25736 0.97561 1.14655 0.88287 0.92568 0.93043 0.89954 0.86287 0.79801 0.94199 0.88806 0.91980 0.95722 0.80205 0.92285 0.93589 0.90937 0.91340 0.93435 0.94357 0.91226 0.90746 0.79416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 10.10 71.98 0.73 -1.63 16 2 C 0.12 2.16 7.23 86.38 0.62 2.79 16 3 N -0.38 -9.87 3.68 -348.05 -1.28 -11.15 16 4 C 0.05 1.43 10.38 83.54 0.87 2.30 16 5 C -0.23 -6.64 5.16 -20.14 -0.10 -6.74 16 6 C 0.13 3.68 4.05 85.56 0.35 4.03 16 7 N -0.53 -18.20 4.23 -875.54 -3.71 -21.91 16 8 C 0.06 2.54 4.27 86.30 0.37 2.91 16 9 C 0.22 11.48 2.32 29.85 0.07 11.55 16 10 H 0.02 0.92 6.22 -2.39 -0.01 0.91 16 11 O -0.58 -31.29 11.88 -148.98 -1.77 -33.06 16 12 C -0.66 -36.88 8.76 25.60 0.22 -36.66 16 13 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 14 C -0.02 -1.02 5.40 84.65 0.46 -0.56 16 15 N -0.92 -58.26 13.53 21.45 0.29 -57.97 16 16 Si 1.12 50.22 29.90 68.60 2.05 52.27 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 20 C 0.07 2.25 2.79 44.91 0.13 2.38 16 21 C -0.13 -3.41 9.16 71.98 0.66 -2.75 16 22 C -0.18 -4.80 8.52 71.98 0.61 -4.18 16 23 C 0.06 1.65 11.96 85.24 1.02 2.67 16 24 N -0.33 -10.14 12.42 -57.03 -0.71 -10.85 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.12 1.50 8.07 -2.38 -0.02 1.49 16 30 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.04 1.04 7.33 -2.39 -0.02 1.03 16 32 H 0.09 2.24 5.88 -2.39 -0.01 2.23 16 33 H 0.06 2.53 6.66 -2.39 -0.02 2.51 16 34 H 0.02 1.01 6.43 -2.39 -0.02 1.00 16 35 H 0.35 17.88 9.04 -74.06 -0.67 17.21 16 36 H 0.27 17.50 6.47 -92.71 -0.60 16.90 16 37 H 0.05 1.88 6.07 -2.39 -0.01 1.87 16 38 H 0.07 1.58 6.29 -2.39 -0.02 1.56 16 39 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.18 6.60 -2.38 -0.02 1.17 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.70 6.75 -2.39 -0.02 1.69 16 44 H 0.19 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -71.58 349.73 1.36 -70.22 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.49 Total: 36.35 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 6.00 Total: -23.90 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -5.41 Total: -101.87 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.77 Total: -33.06 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -71.58 1.36 -70.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930859632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.897 kcal (2) G-P(sol) polarization free energy of solvation -71.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds