Wall clock time and date at job start Tue Mar 31 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.44955 * 110.99969 * 2 1 4 4 C 1.55411 * 109.39417 * 217.46206 * 3 2 1 5 5 C 1.52853 * 109.84945 * 330.25198 * 4 3 2 6 6 H 1.09000 * 107.56977 * 187.82766 * 5 4 3 7 7 C 1.51887 * 113.48778 * 68.96566 * 5 4 3 8 8 C 1.54494 * 104.48358 * 230.42941 * 7 5 4 9 9 C 1.54856 * 102.54004 * 25.45265 * 8 7 5 10 10 H 1.09004 * 113.20712 * 199.57327 * 9 8 7 11 11 C 1.45172 * 110.99980 * 127.25511 * 2 1 3 12 12 N 1.48264 * 110.41682 * 304.81690 * 5 4 3 13 13 C 1.46905 * 111.00279 * 227.62889 * 12 5 4 14 14 C 1.50703 * 109.46900 * 61.38517 * 13 12 5 15 15 O 1.21274 * 120.00181 * 6.03896 * 14 13 12 16 16 N 1.34781 * 119.99343 * 186.04037 * 14 13 12 17 17 C 1.46502 * 119.99189 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.46815 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99773 * 359.97438 * 18 17 16 20 20 C 1.37867 * 120.00032 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00211 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00263 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46706 * 90.00188 * 22 20 18 24 24 H 1.48500 * 109.47217 * 210.00279 * 22 20 18 25 25 H 1.48497 * 109.46968 * 330.00736 * 22 20 18 26 26 H 1.08999 * 109.46934 * 292.74569 * 1 2 3 27 27 H 1.08999 * 109.47560 * 52.74344 * 1 2 3 28 28 H 1.09001 * 109.47310 * 172.74994 * 1 2 3 29 29 H 1.09004 * 109.44462 * 337.33724 * 3 2 1 30 30 H 1.08999 * 109.44747 * 97.23310 * 3 2 1 31 31 H 1.09003 * 108.77727 * 210.41429 * 4 3 2 32 32 H 1.08993 * 109.68337 * 90.65108 * 4 3 2 33 33 H 1.08998 * 110.43096 * 349.18069 * 7 5 4 34 34 H 1.09000 * 110.43126 * 111.67966 * 7 5 4 35 35 H 1.08998 * 110.79440 * 267.18969 * 8 7 5 36 36 H 1.09000 * 110.79241 * 143.71747 * 8 7 5 37 37 H 1.08993 * 108.49273 * 270.76057 * 11 2 1 38 38 H 1.09001 * 108.49440 * 28.21085 * 11 2 1 39 39 H 1.08998 * 109.47272 * 181.38672 * 13 12 5 40 40 H 1.08995 * 109.46384 * 301.38870 * 13 12 5 41 41 H 0.96994 * 120.00202 * 359.97438 * 16 14 13 42 42 H 1.09001 * 109.47175 * 299.99478 * 17 16 14 43 43 H 1.08996 * 109.47203 * 60.00277 * 17 16 14 44 44 H 0.96999 * 120.00217 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9885 1.3533 0.0000 4 6 3.2598 1.4181 -0.8916 5 6 3.9746 0.0671 -0.8753 6 1 4.9262 0.1921 -1.3919 7 6 3.2070 -1.0326 -1.5882 8 6 3.1755 -2.2000 -0.5768 9 6 3.3180 -1.4714 0.7822 10 1 3.6524 -2.1257 1.5874 11 6 1.9893 -0.8204 1.0787 12 7 4.2749 -0.3423 0.5177 13 6 5.6677 -0.7917 0.6458 14 6 6.5957 0.3426 0.2945 15 8 6.1470 1.4479 0.0762 16 7 7.9245 0.1284 0.2229 17 6 8.8267 1.2312 -0.1180 18 6 10.2483 0.7312 -0.1318 19 1 10.4587 -0.3044 0.0916 20 6 11.2804 1.5958 -0.4284 21 7 12.5210 1.1596 -0.4399 22 14 10.9166 3.3871 -0.8140 23 1 10.9446 4.1792 0.4418 24 1 11.9424 3.9097 -1.7519 25 1 9.5736 3.4961 -1.4382 26 1 -0.3633 0.3973 0.9477 27 1 -0.3634 0.6221 -0.8179 28 1 -0.3634 -1.0194 -0.1297 29 1 1.2330 2.0320 -0.3960 30 1 2.2394 1.6457 1.0196 31 1 3.9253 2.1866 -0.4985 32 1 2.9784 1.6684 -1.9144 33 1 2.1944 -0.7017 -1.8190 34 1 3.7273 -1.3314 -2.4982 35 1 4.0129 -2.8779 -0.7421 36 1 2.2271 -2.7344 -0.6319 37 1 2.1004 -0.1961 1.9652 38 1 1.2628 -1.6024 1.2997 39 1 5.8542 -1.1093 1.6717 40 1 5.8433 -1.6277 -0.0311 41 1 8.2834 -0.7555 0.3979 42 1 8.5692 1.6200 -1.1032 43 1 8.7273 2.0243 0.6230 44 1 13.2471 1.7679 -0.6490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931728752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:16 Heat of formation + Delta-G solvation = -5.317270 kcal Electronic energy + Delta-G solvation = -23386.225496 eV Core-core repulsion = 20146.046374 eV Total energy + Delta-G solvation = -3240.179122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71795 -38.63619 -36.20839 -34.22845 -32.77671 -32.34143 -31.67446 -29.05868 -28.16173 -26.36498 -25.47517 -24.60188 -21.93536 -21.37362 -20.03344 -19.88747 -19.09746 -17.25357 -16.60969 -16.10718 -15.59569 -15.34096 -15.07514 -14.79198 -14.39408 -14.16874 -13.61665 -13.54843 -13.36788 -13.19231 -12.78350 -12.60480 -12.42149 -12.25838 -11.92523 -11.80791 -11.38192 -11.25432 -11.09068 -10.98372 -10.94681 -10.76089 -10.69585 -10.45460 -10.05294 -9.95853 -9.47866 -9.03138 -8.76015 -8.35377 -8.08788 -8.06343 -6.20435 -4.22463 3.27063 3.32379 3.34257 3.43107 3.69954 3.84328 4.27615 4.34837 4.76386 4.80533 4.93661 5.05463 5.10123 5.14961 5.26919 5.27025 5.33708 5.39174 5.47124 5.51954 5.60027 5.63256 5.65805 5.71178 5.77889 5.83168 5.93915 5.98655 6.18550 6.20878 6.27295 6.54084 6.63088 6.82451 6.99492 7.10064 7.10346 7.17059 7.23009 7.30410 7.42739 8.17396 8.55872 8.77508 9.01513 9.40209 10.91598 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034180 B = 0.003884 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.001431 B = 7206.886258 C = 7627.702977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.548 5.548 3 C 0.072 3.928 4 C -0.090 4.090 5 C 0.084 3.916 6 H 0.055 0.945 7 C -0.126 4.126 8 C -0.134 4.134 9 C 0.057 3.943 10 H 0.097 0.903 11 C 0.082 3.918 12 N -0.481 5.481 13 C 0.023 3.977 14 C 0.500 3.500 15 O -0.539 6.539 16 N -0.709 5.709 17 C 0.223 3.777 18 C -0.543 4.543 19 H 0.079 0.921 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.261 1.261 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.395 0.605 42 H 0.023 0.977 43 H 0.020 0.980 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.441 -6.415 1.144 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.271 5.271 3 C -0.056 4.056 4 C -0.128 4.128 5 C -0.024 4.024 6 H 0.073 0.927 7 C -0.164 4.164 8 C -0.173 4.173 9 C -0.051 4.051 10 H 0.115 0.885 11 C -0.047 4.047 12 N -0.205 5.205 13 C -0.108 4.108 14 C 0.285 3.715 15 O -0.417 6.417 16 N -0.359 5.359 17 C 0.101 3.899 18 C -0.581 4.581 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.531 5.531 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.185 1.185 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.228 0.772 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.435 -5.269 0.938 24.038 hybrid contribution 0.282 0.086 0.107 0.314 sum -23.152 -5.183 1.045 23.748 Atomic orbital electron populations 1.22391 0.87408 1.01811 1.00001 1.59741 1.06359 1.13837 1.47208 1.22158 0.96453 0.87412 0.99615 1.21861 0.95552 0.97050 0.98362 1.21737 0.98207 0.94882 0.87609 0.92683 1.22347 1.02838 0.94466 0.96796 1.22788 1.01212 0.97806 0.95455 1.23080 0.92922 0.91687 0.97459 0.88525 1.21139 0.95246 0.96478 0.91808 1.65693 1.00763 1.29780 1.24243 1.22201 0.89932 0.95997 1.02710 1.20348 0.83164 0.89827 0.78209 1.90626 1.76363 1.24948 1.49749 1.46187 1.05808 1.14554 1.69362 1.19443 0.88866 0.86060 0.95555 1.21108 0.88594 0.98661 1.49701 0.90313 1.24800 0.94727 0.98939 0.94196 1.69883 0.98970 1.36038 1.48192 0.86806 0.78899 0.84890 0.79030 1.19861 1.20930 1.18520 0.96103 0.91607 0.91828 0.92343 0.93762 0.90158 0.92551 0.88298 0.93328 0.92588 0.91123 0.94256 0.91850 0.88303 0.92437 0.77208 0.95882 0.96257 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.24 60.07 0.55 0.81 16 2 N -0.55 -5.60 1.53 -245.72 -0.38 -5.98 16 3 C 0.07 0.84 5.72 -3.59 -0.02 0.82 16 4 C -0.09 -1.26 5.84 -25.53 -0.15 -1.41 16 5 C 0.08 1.21 1.59 -67.60 -0.11 1.10 16 6 H 0.05 0.96 6.10 -51.93 -0.32 0.64 16 7 C -0.13 -1.50 5.81 -26.51 -0.15 -1.65 16 8 C -0.13 -1.36 6.07 -24.97 -0.15 -1.52 16 9 C 0.06 0.61 3.70 -65.85 -0.24 0.37 16 10 H 0.10 0.89 8.07 -51.93 -0.42 0.47 16 11 C 0.08 0.82 4.54 -5.81 -0.03 0.80 16 12 N -0.48 -6.72 4.36 -217.06 -0.95 -7.66 16 13 C 0.02 0.34 5.28 -4.97 -0.03 0.31 16 14 C 0.50 9.58 6.95 -10.98 -0.08 9.51 16 15 O -0.54 -12.09 13.79 5.56 0.08 -12.01 16 16 N -0.71 -14.50 5.55 -61.47 -0.34 -14.84 16 17 C 0.22 5.54 4.50 -5.19 -0.02 5.52 16 18 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 19 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 21 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 22 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 26 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16 28 H 0.06 0.44 8.02 -51.93 -0.42 0.02 16 29 H 0.06 0.60 7.48 -51.93 -0.39 0.21 16 30 H 0.04 0.58 7.42 -51.93 -0.39 0.20 16 31 H 0.08 1.37 7.00 -51.93 -0.36 1.00 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.16 6.18 -51.93 -0.32 0.84 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 36 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 37 H 0.04 0.44 7.47 -51.93 -0.39 0.06 16 38 H 0.06 0.52 7.60 -51.93 -0.39 0.13 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.74 7.67 -51.93 -0.40 0.35 16 41 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16 42 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 43 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -31.53 330.57 -8.76 -40.29 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.40 Total: 2.77 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.86 Total: 1.40 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.89 Total: -54.43 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.53 -8.76 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931728752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.974 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds