Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47162 * 2 1 4 4 C 1.34778 * 119.99966 * 90.00464 * 3 2 1 5 5 O 1.21275 * 119.99703 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99837 * 359.97438 * 4 3 2 7 7 H 1.08995 * 110.33722 * 317.74642 * 6 4 3 8 8 C 1.54904 * 110.37238 * 80.00666 * 6 4 3 9 9 C 1.55143 * 101.68431 * 155.87672 * 8 6 4 10 10 C 1.54354 * 102.99982 * 324.39260 * 9 8 6 11 11 N 1.47439 * 107.25080 * 22.23089 * 10 9 8 12 12 C 1.46908 * 110.99901 * 123.29102 * 11 10 9 13 13 C 1.46496 * 119.99841 * 269.99479 * 3 2 1 14 14 C 1.53951 * 113.74046 * 38.74549 * 13 3 2 15 15 N 1.47814 * 86.03590 * 222.07883 * 14 13 3 16 16 C 1.36933 * 134.45642 * 204.63857 * 15 14 13 17 17 H 1.08006 * 119.99690 * 179.86740 * 16 15 14 18 18 C 1.38808 * 120.00235 * 359.87411 * 16 15 14 19 19 N 1.31625 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00135 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46897 * 90.00338 * 20 18 16 22 22 H 1.48505 * 109.46987 * 209.99774 * 20 18 16 23 23 H 1.48491 * 109.47279 * 330.00064 * 20 18 16 24 24 C 1.47587 * 91.05200 * 24.55233 * 15 14 13 25 25 H 1.08995 * 109.47549 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47218 * 299.99914 * 1 2 3 27 27 H 1.09004 * 109.47162 * 60.00000 * 1 2 3 28 28 H 1.09001 * 109.46929 * 239.99176 * 2 1 3 29 29 H 1.09004 * 109.46645 * 119.99919 * 2 1 3 30 30 H 1.09002 * 110.99035 * 273.98853 * 8 6 4 31 31 H 1.08995 * 110.99272 * 37.76742 * 8 6 4 32 32 H 1.09003 * 110.70341 * 82.75307 * 9 8 6 33 33 H 1.09005 * 110.70326 * 205.97631 * 9 8 6 34 34 H 1.09001 * 109.85687 * 262.82973 * 10 9 8 35 35 H 1.09007 * 110.04317 * 141.73224 * 10 9 8 36 36 H 1.08999 * 109.46764 * 299.15210 * 12 11 10 37 37 H 1.08996 * 109.47082 * 59.15947 * 12 11 10 38 38 H 1.08997 * 109.46978 * 179.15792 * 12 11 10 39 39 H 1.08996 * 112.94389 * 170.33395 * 13 3 2 40 40 H 1.08994 * 113.77057 * 336.34962 * 14 13 3 41 41 H 1.09003 * 113.76647 * 107.74701 * 14 13 3 42 42 H 0.96995 * 119.99914 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.76611 * 221.15407 * 24 15 14 44 44 H 1.08991 * 113.77109 * 89.74544 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.6469 3.1600 1.1672 6 6 1.9914 1.3062 2.4723 7 1 1.0618 0.7394 2.4220 8 6 3.1767 0.3691 2.8135 9 6 3.0544 0.2566 4.3560 10 6 2.5752 1.6643 4.7698 11 7 1.9451 2.2773 3.5862 12 6 0.5626 2.6811 3.8755 13 6 2.2626 2.0717 -1.2687 14 6 1.2171 1.7604 -2.3551 15 7 2.3609 1.6801 -3.2879 16 6 2.5094 1.8426 -4.6395 17 1 3.4829 1.7286 -5.0933 18 6 1.4090 2.1539 -5.4262 19 7 0.2227 2.2924 -4.8731 20 14 1.6118 2.3763 -7.2698 21 1 1.4166 1.0709 -7.9502 22 1 0.6039 3.3481 -7.7649 23 1 2.9757 2.8867 -7.5597 24 6 3.2784 1.3567 -2.1781 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.0532 -0.6049 2.3399 31 1 4.1266 0.8216 2.5291 32 1 2.3166 -0.4975 4.6301 33 1 4.0222 0.0310 4.8039 34 1 3.4260 2.2657 5.0903 35 1 1.8489 1.5888 5.5792 36 1 -0.0218 1.8037 4.1522 37 1 0.5575 3.3956 4.6986 38 1 0.1264 3.1437 2.9901 39 1 2.4601 3.1361 -1.1420 40 1 0.7014 0.8113 -2.2094 41 1 0.5380 2.5877 -2.5612 42 1 -0.5462 2.5104 -5.4228 43 1 4.2419 1.8623 -2.2431 44 1 3.3694 0.2887 -1.9803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949793989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = 40.239817 kcal Electronic energy + Delta-G solvation = -23389.139793 eV Core-core repulsion = 20150.936175 eV Total energy + Delta-G solvation = -3238.203618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.35093 -38.63081 -37.06784 -34.94406 -32.27155 -32.03731 -30.12773 -29.66091 -27.34776 -25.81463 -24.83402 -23.63793 -23.32204 -21.64246 -21.25740 -19.36332 -18.33923 -17.50298 -16.73340 -16.18695 -15.76533 -15.05933 -14.94322 -14.59076 -14.14490 -13.88825 -13.67554 -13.50849 -13.15721 -12.92526 -12.71178 -12.46831 -12.31496 -12.10817 -11.63011 -11.58778 -11.52308 -11.46465 -11.27266 -11.14134 -10.96131 -10.87199 -10.71700 -10.55844 -10.21322 -10.04291 -9.52330 -9.29947 -8.78714 -8.35804 -8.06528 -6.88832 -5.77741 -3.10068 2.95158 3.20091 3.39995 3.44863 3.46878 3.96547 4.35584 4.47338 4.49699 4.70307 4.86341 5.00027 5.08550 5.21503 5.22926 5.24934 5.33451 5.38808 5.48076 5.50288 5.52199 5.59103 5.64421 5.72232 5.78580 5.86172 5.89532 5.98753 6.00192 6.11825 6.22602 6.39588 6.50175 6.63195 6.74471 6.90439 6.92689 7.21731 7.41748 7.53997 7.88875 7.96707 8.64734 9.03599 9.69686 10.57442 11.39538 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035917 B = 0.003904 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.389596 B = 7170.611268 C = 7209.749803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 N -0.598 5.598 4 C 0.520 3.480 5 O -0.522 6.522 6 C 0.053 3.947 7 H 0.077 0.923 8 C -0.118 4.118 9 C -0.140 4.140 10 C 0.044 3.956 11 N -0.512 5.512 12 C 0.023 3.977 13 C 0.093 3.907 14 C 0.153 3.847 15 N -0.607 5.607 16 C -0.222 4.222 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.108 3.892 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.046 0.954 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -7.147 19.175 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.021 4.021 3 N -0.332 5.332 4 C 0.305 3.695 5 O -0.397 6.397 6 C -0.059 4.059 7 H 0.095 0.905 8 C -0.156 4.156 9 C -0.179 4.179 10 C -0.084 4.084 11 N -0.236 5.236 12 C -0.125 4.125 13 C -0.011 4.011 14 C 0.028 3.972 15 N -0.333 5.333 16 C -0.350 4.350 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.019 4.019 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.592 -5.970 18.698 19.692 hybrid contribution -0.592 -0.813 -0.857 1.322 sum 1.000 -6.783 17.841 19.113 Atomic orbital electron populations 1.22402 0.95956 1.02054 1.03194 1.21571 0.94595 0.83101 1.02877 1.48158 1.65110 1.13903 1.06037 1.20280 0.77928 0.86709 0.84540 1.90666 1.44543 1.17492 1.86953 1.22609 0.99654 0.92341 0.91294 0.90519 1.22698 0.98278 0.98868 0.95784 1.22795 1.02118 0.97295 0.95659 1.22860 0.99469 0.93924 0.92146 1.63068 1.17910 1.38382 1.04266 1.22545 0.88075 0.99586 1.02320 1.23958 0.99378 0.97807 0.79933 1.22816 0.91344 0.99571 0.83512 1.45711 1.04399 1.81066 1.02145 1.18999 0.94547 1.41119 0.80291 0.90106 1.24785 0.95293 1.02056 0.98194 1.69817 0.98665 1.54057 1.34232 0.86098 0.77226 0.77487 0.84823 1.21623 1.21599 1.20564 1.22972 0.94768 0.96750 0.87424 0.91915 0.93180 0.90395 0.89678 0.91103 0.89905 0.89886 0.91260 0.90287 0.90263 0.92548 0.95632 0.91105 0.91161 0.86848 0.94409 0.90751 0.93611 0.93597 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 9.80 37.16 0.36 -1.88 16 2 C 0.10 1.34 4.91 -4.04 -0.02 1.32 16 3 N -0.60 -9.88 2.70 -167.90 -0.45 -10.33 16 4 C 0.52 8.75 6.98 -10.98 -0.08 8.67 16 5 O -0.52 -11.01 16.04 5.56 0.09 -10.92 16 6 C 0.05 0.67 1.87 -67.34 -0.13 0.54 16 7 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 8 C -0.12 -1.19 6.08 -24.59 -0.15 -1.34 16 9 C -0.14 -1.13 6.95 -24.89 -0.17 -1.30 16 10 C 0.04 0.42 6.90 -2.82 -0.02 0.40 16 11 N -0.51 -6.54 4.67 -232.95 -1.09 -7.63 16 12 C 0.02 0.26 9.13 60.07 0.55 0.80 16 13 C 0.09 1.89 4.40 -70.13 -0.31 1.58 16 14 C 0.15 3.60 6.42 -2.83 -0.02 3.58 16 15 N -0.61 -15.71 3.70 -177.86 -0.66 -16.36 16 16 C -0.22 -6.27 10.70 -15.06 -0.16 -6.44 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.26 11.39 55.49 0.63 -26.63 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.11 2.28 8.46 -2.96 -0.03 2.26 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.59 7.16 -51.93 -0.37 0.22 16 27 H 0.08 1.21 5.74 -51.93 -0.30 0.91 16 28 H 0.08 1.21 6.35 -51.93 -0.33 0.88 16 29 H 0.07 0.73 4.94 -51.93 -0.26 0.47 16 30 H 0.08 0.69 6.65 -51.93 -0.35 0.35 16 31 H 0.08 0.96 8.05 -51.93 -0.42 0.55 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.45 7.58 -51.92 -0.39 0.06 16 36 H 0.03 0.24 8.09 -51.93 -0.42 -0.18 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.11 2.57 7.22 -51.93 -0.37 2.19 16 40 H 0.04 0.86 4.97 -51.93 -0.26 0.60 16 41 H 0.07 1.98 7.17 -51.93 -0.37 1.61 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.67 6.84 -51.93 -0.36 0.31 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -33.26 337.29 -8.69 -41.94 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.01 Total: -0.26 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.26 Total: 7.91 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -1.57 Total: -60.95 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.26 -8.69 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949793989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.183 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds