Wall clock time and date at job start Tue Mar 31 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47264 * 2 1 4 4 C 1.34783 * 119.99908 * 90.00235 * 3 2 1 5 5 O 1.21279 * 119.99975 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.99521 * 359.97438 * 4 3 2 7 7 H 1.08996 * 109.90934 * 41.10469 * 6 4 3 8 8 C 1.53990 * 109.91652 * 279.99835 * 6 4 3 9 9 C 1.54597 * 105.14143 * 239.42717 * 8 6 4 10 10 C 1.54934 * 102.92105 * 338.04435 * 9 8 6 11 11 N 1.47907 * 109.91371 * 162.41263 * 6 4 3 12 12 C 1.46900 * 110.99845 * 265.19809 * 11 6 4 13 13 C 1.46500 * 120.00075 * 269.99992 * 3 2 1 14 14 C 1.53945 * 113.74110 * 36.67788 * 13 3 2 15 15 N 1.47579 * 86.11560 * 222.04379 * 14 13 3 16 16 C 1.36937 * 134.49674 * 204.63784 * 15 14 13 17 17 H 1.07997 * 120.00465 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99560 * 359.97438 * 16 15 14 19 19 N 1.31623 * 120.00057 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47139 * 60.00090 * 20 18 16 22 22 H 1.48494 * 109.47273 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46641 * 300.00434 * 20 18 16 24 24 C 1.47578 * 91.01562 * 24.64194 * 15 14 13 25 25 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47018 * 300.00007 * 1 2 3 27 27 H 1.08999 * 109.47141 * 59.99867 * 1 2 3 28 28 H 1.09001 * 109.47018 * 239.99992 * 2 1 3 29 29 H 1.08999 * 109.47141 * 120.00133 * 2 1 3 30 30 H 1.09005 * 110.30685 * 120.51328 * 8 6 4 31 31 H 1.09005 * 110.31310 * 358.34325 * 8 6 4 32 32 H 1.09000 * 110.72471 * 96.39833 * 9 8 6 33 33 H 1.09001 * 110.72634 * 219.68854 * 9 8 6 34 34 H 1.09002 * 110.66845 * 155.85307 * 10 9 8 35 35 H 1.08999 * 110.67017 * 278.97874 * 10 9 8 36 36 H 1.08996 * 109.47288 * 59.99884 * 12 11 6 37 37 H 1.09002 * 109.47076 * 179.97438 * 12 11 6 38 38 H 1.09003 * 109.47046 * 299.99439 * 12 11 6 39 39 H 1.09001 * 112.94270 * 168.40586 * 13 3 2 40 40 H 1.09003 * 113.76670 * 336.34540 * 14 13 3 41 41 H 1.08998 * 113.77231 * 107.74417 * 14 13 3 42 42 H 0.96998 * 119.99973 * 180.02562 * 19 18 16 43 43 H 1.08998 * 113.76970 * 221.05920 * 24 15 14 44 44 H 1.09001 * 113.77827 * 89.65809 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 1.1673 5 8 2.6469 3.1601 1.1673 6 6 1.9913 1.3062 2.4723 7 1 2.3414 0.2760 2.4077 8 6 0.4870 1.3295 2.8006 9 6 0.3816 2.0583 4.1599 10 6 1.8006 1.8844 4.7572 11 7 2.6863 2.0107 3.5716 12 6 4.0024 1.4122 3.8314 13 6 2.2626 2.0718 -1.2687 14 6 1.2460 1.7218 -2.3706 15 7 2.4043 1.6725 -3.2838 16 6 2.5696 1.8321 -4.6337 17 1 3.5528 1.7437 -5.0716 18 6 1.4730 2.1065 -5.4395 19 7 0.2746 2.2137 -4.9059 20 14 1.6983 2.3235 -7.2812 21 1 2.2668 1.0799 -7.8603 22 1 0.3836 2.6073 -7.9106 23 1 2.6238 3.4566 -7.5364 24 6 3.3130 1.3819 -2.1578 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.1025 0.3131 2.8855 31 1 -0.0592 1.8786 2.0336 32 1 0.1510 3.1137 4.0149 33 1 -0.3653 1.5829 4.7956 34 1 2.0124 2.6713 5.4812 35 1 1.9077 0.9007 5.2143 36 1 4.6150 1.4772 2.9322 37 1 4.4919 1.9495 4.6437 38 1 3.8771 0.3661 4.1109 39 1 2.4271 3.1422 -1.1450 40 1 0.7578 0.7578 -2.2277 41 1 0.5450 2.5262 -2.5932 42 1 -0.4916 2.4051 -5.4690 43 1 4.2623 1.9150 -2.2106 44 1 3.4320 0.3181 -1.9524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949793990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:19 Heat of formation + Delta-G solvation = 43.827365 kcal Electronic energy + Delta-G solvation = -23448.189888 eV Core-core repulsion = 20210.141838 eV Total energy + Delta-G solvation = -3238.048050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39664 -38.58869 -37.03208 -34.97390 -32.37557 -32.02184 -30.12354 -29.60142 -27.36395 -25.80725 -24.81702 -23.67383 -23.16403 -21.73492 -21.31388 -19.37609 -18.23394 -17.34425 -16.77473 -16.26711 -16.02110 -15.10011 -14.75036 -14.43406 -14.15487 -13.84339 -13.76521 -13.69898 -13.33435 -12.66307 -12.53587 -12.49571 -12.19728 -12.17893 -11.66278 -11.58428 -11.50893 -11.45751 -11.20386 -11.04486 -10.87836 -10.83807 -10.71009 -10.57645 -10.19339 -10.06664 -9.52150 -9.33216 -8.78542 -8.44845 -8.06725 -6.88964 -5.77696 -3.10139 2.97941 3.19478 3.40753 3.44595 3.45724 3.96015 4.43623 4.48106 4.48860 4.71522 4.85331 4.97952 5.15115 5.22119 5.23818 5.27468 5.35926 5.39139 5.45915 5.50328 5.59885 5.62904 5.68282 5.72830 5.77848 5.87473 5.90156 5.98928 6.06510 6.12204 6.23613 6.42246 6.50485 6.61459 6.68165 6.84585 6.91449 7.21510 7.41493 7.54014 7.88654 7.97038 8.64635 9.03798 9.69637 10.57573 11.39457 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034997 B = 0.004024 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.876486 B = 6957.405412 C = 7258.547299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.518 3.482 5 O -0.522 6.522 6 C 0.048 3.952 7 H 0.073 0.927 8 C -0.120 4.120 9 C -0.123 4.123 10 C 0.036 3.964 11 N -0.499 5.499 12 C 0.018 3.982 13 C 0.093 3.907 14 C 0.154 3.846 15 N -0.606 5.606 16 C -0.223 4.223 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.107 3.893 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.113 0.887 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.255 0.745 43 H 0.045 0.955 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -6.427 19.248 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.304 3.696 5 O -0.397 6.397 6 C -0.064 4.064 7 H 0.091 0.909 8 C -0.158 4.158 9 C -0.161 4.161 10 C -0.091 4.091 11 N -0.223 5.223 12 C -0.130 4.130 13 C -0.011 4.011 14 C 0.029 3.971 15 N -0.333 5.333 16 C -0.351 4.351 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.020 4.020 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.131 0.869 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.493 -5.184 18.760 19.469 hybrid contribution 0.006 -1.065 -0.933 1.416 sum 0.499 -6.249 17.827 18.897 Atomic orbital electron populations 1.22586 0.95837 1.02234 1.03858 1.21504 0.94769 0.82979 1.02587 1.48190 1.65118 1.13869 1.06050 1.20298 0.77818 0.86910 0.84559 1.90667 1.44554 1.17501 1.86935 1.22429 0.95776 0.96403 0.91798 0.90913 1.22485 0.93488 1.01484 0.98369 1.22506 0.96256 1.01787 0.95570 1.23260 0.92425 1.00331 0.93116 1.64329 1.02331 1.51997 1.03636 1.22523 0.91365 0.96612 1.02509 1.23959 0.99271 0.97855 0.79998 1.22761 0.91407 0.99373 0.83607 1.45650 1.03567 1.82004 1.02042 1.18951 0.94015 1.41859 0.80257 0.90167 1.24785 0.95219 1.02070 0.98188 1.69805 0.98134 1.54571 1.34258 0.86177 0.76738 0.78017 0.84684 1.21184 1.21526 1.21008 1.22974 0.94768 0.96848 0.87379 0.92008 0.92023 0.90569 0.89826 0.91399 0.90380 0.89898 0.90327 0.90728 0.89739 0.93727 0.91185 0.90969 0.95528 0.86872 0.94463 0.90718 0.93547 0.93629 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 9.82 37.16 0.36 -1.95 16 2 C 0.11 1.39 5.00 -4.04 -0.02 1.37 16 3 N -0.60 -9.91 2.69 -167.91 -0.45 -10.37 16 4 C 0.52 8.73 6.72 -10.98 -0.07 8.65 16 5 O -0.52 -11.01 16.04 5.56 0.09 -10.92 16 6 C 0.05 0.60 2.08 -67.79 -0.14 0.46 16 7 H 0.07 0.80 5.99 -51.93 -0.31 0.49 16 8 C -0.12 -1.25 4.68 -25.38 -0.12 -1.37 16 9 C -0.12 -1.14 7.06 -24.87 -0.18 -1.32 16 10 C 0.04 0.34 6.56 -1.90 -0.01 0.33 16 11 N -0.50 -6.31 4.75 -232.17 -1.10 -7.42 16 12 C 0.02 0.20 9.40 60.06 0.56 0.76 16 13 C 0.09 1.90 4.40 -70.15 -0.31 1.59 16 14 C 0.15 3.62 6.33 -2.98 -0.02 3.60 16 15 N -0.61 -15.75 3.70 -178.11 -0.66 -16.41 16 16 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.23 11.38 55.49 0.63 -26.60 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.11 2.29 8.46 -2.98 -0.03 2.27 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.69 4.36 -51.93 -0.23 0.46 16 27 H 0.08 1.16 5.85 -51.93 -0.30 0.86 16 28 H 0.08 1.21 6.36 -51.93 -0.33 0.88 16 29 H 0.07 0.71 5.98 -51.93 -0.31 0.40 16 30 H 0.08 0.64 7.78 -51.93 -0.40 0.24 16 31 H 0.08 1.00 6.48 -51.93 -0.34 0.66 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.36 7.96 -51.93 -0.41 -0.06 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.23 8.01 -51.93 -0.42 -0.18 16 39 H 0.11 2.57 7.24 -51.93 -0.38 2.19 16 40 H 0.04 0.85 5.01 -51.93 -0.26 0.59 16 41 H 0.07 1.98 7.15 -51.93 -0.37 1.61 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.67 6.97 -51.93 -0.36 0.30 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -33.26 334.44 -8.63 -41.89 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.93 Total: -0.06 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.22 Total: 7.65 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.58 Total: -60.79 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.26 -8.63 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949793990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.714 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds