Wall clock time and date at job start Tue Mar 31 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.90974 * 2 1 4 4 C 1.54000 * 109.91767 * 238.89688 * 2 1 3 5 5 H 1.08997 * 110.31013 * 120.41086 * 4 2 1 6 6 C 1.50695 * 110.30804 * 358.33663 * 4 2 1 7 7 O 1.21285 * 120.00113 * 273.69206 * 6 4 2 8 8 N 1.34773 * 120.00409 * 93.68754 * 6 4 2 9 9 C 1.47435 * 125.64253 * 359.94629 * 8 6 4 10 10 C 1.54912 * 104.82675 * 155.91501 * 9 8 6 11 11 C 1.55155 * 101.58184 * 37.01342 * 10 9 8 12 12 H 1.08997 * 110.87654 * 82.93498 * 11 10 9 13 13 N 1.46507 * 110.71758 * 206.13229 * 11 10 9 14 14 C 1.36933 * 120.00025 * 268.51996 * 13 11 10 15 15 H 1.08001 * 119.99883 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00281 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99835 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00212 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47283 * 89.99625 * 18 16 14 20 20 H 1.48505 * 109.47073 * 209.99625 * 18 16 14 21 21 H 1.48500 * 109.47218 * 329.99818 * 18 16 14 22 22 C 1.47021 * 125.65581 * 179.97438 * 8 6 4 23 23 C 1.54596 * 105.13910 * 239.42176 * 4 2 1 24 24 C 1.54940 * 102.92178 * 338.04027 * 23 4 2 25 25 N 1.47899 * 109.92018 * 121.30536 * 2 1 3 26 26 C 1.46900 * 111.00153 * 265.19881 * 25 2 1 27 27 H 1.08998 * 109.47111 * 183.06797 * 1 2 3 28 28 H 1.08997 * 109.47116 * 303.06278 * 1 2 3 29 29 H 1.09000 * 109.47449 * 63.06866 * 1 2 3 30 30 H 1.08996 * 110.36213 * 37.08099 * 9 8 6 31 31 H 1.08992 * 110.46014 * 274.80241 * 9 8 6 32 32 H 1.08998 * 111.00624 * 278.93645 * 10 9 8 33 33 H 1.09004 * 111.00201 * 155.08399 * 10 9 8 34 34 H 0.97002 * 120.00131 * 88.51920 * 13 11 10 35 35 H 0.96999 * 119.99906 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.87733 * 61.59743 * 22 8 6 37 37 H 1.09005 * 109.87983 * 300.43596 * 22 8 6 38 38 H 1.09000 * 110.72660 * 96.39816 * 23 4 2 39 39 H 1.08994 * 110.72726 * 219.68279 * 23 4 2 40 40 H 1.08995 * 110.67091 * 278.97982 * 24 23 4 41 41 H 1.09000 * 110.66601 * 155.84740 * 24 23 4 42 42 H 1.09002 * 109.47387 * 59.99644 * 26 25 2 43 43 H 1.09001 * 109.47246 * 179.97438 * 26 25 2 44 44 H 1.08998 * 109.47042 * 299.99948 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0546 -0.7479 -1.2397 5 1 2.6700 -0.0858 -1.8488 6 6 0.9046 -1.2857 -2.0516 7 8 0.4267 -2.3678 -1.7837 8 7 0.4070 -0.5643 -3.0755 9 6 0.8894 0.7602 -3.5076 10 6 0.4724 0.8679 -4.9957 11 6 -0.9063 0.1562 -4.9851 12 1 -1.6939 0.8399 -4.6683 13 7 -1.2097 -0.4056 -6.3037 14 6 -1.9047 0.3367 -7.2208 15 1 -2.2296 1.3361 -6.9718 16 6 -2.1927 -0.1957 -8.4699 17 7 -1.7972 -1.4140 -8.7731 18 14 -3.1402 0.8172 -9.7212 19 1 -2.1870 1.5991 -10.5491 20 1 -3.9287 -0.0878 -10.5956 21 1 -4.0582 1.7455 -9.0135 22 6 -0.7071 -0.9673 -3.9461 23 6 2.9059 -1.9105 -0.6796 24 6 3.2682 -1.4198 0.7447 25 7 2.0339 -0.7225 1.1881 26 6 2.3212 0.2083 2.2876 27 1 -0.3633 -1.0262 0.0550 28 1 -0.3633 0.5606 0.8612 29 1 -0.3634 0.4654 -0.9162 30 1 1.9736 0.8186 -3.4123 31 1 0.4149 1.5480 -2.9227 32 1 1.1785 0.3422 -5.6384 33 1 0.3717 1.9101 -5.2988 34 1 -0.9182 -1.3034 -6.5272 35 1 -1.9981 -1.7859 -9.6461 36 1 -1.6143 -1.0897 -3.3543 37 1 -0.4631 -1.9014 -4.4520 38 1 2.3214 -2.8294 -0.6339 39 1 3.8052 -2.0536 -1.2786 40 1 4.1097 -0.7280 0.7108 41 1 3.4888 -2.2640 1.3979 42 1 1.4095 0.7391 2.5620 43 1 2.6897 -0.3493 3.1487 44 1 3.0771 0.9257 1.9682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968724136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:03 Heat of formation + Delta-G solvation = -10.115446 kcal Electronic energy + Delta-G solvation = -22930.742155 eV Core-core repulsion = 19690.354969 eV Total energy + Delta-G solvation = -3240.387186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62352 -38.62932 -37.04754 -34.15085 -32.60280 -31.70339 -31.23069 -29.51207 -28.06324 -26.48343 -25.10080 -23.88338 -22.89551 -21.56069 -20.91828 -19.99414 -18.44944 -17.42098 -17.21001 -16.30032 -15.73160 -15.63871 -14.92835 -14.61182 -14.53037 -14.12112 -13.56939 -13.35663 -13.31138 -12.98121 -12.73182 -12.56048 -12.22416 -12.14243 -12.00962 -11.75861 -11.67225 -11.50127 -11.33156 -11.18614 -11.01632 -10.89447 -10.80299 -10.71892 -10.33185 -10.10301 -9.78356 -9.54258 -8.98571 -8.69741 -8.37039 -7.06363 -5.83650 -3.14425 2.78544 3.15519 3.39701 3.45111 3.46966 3.70112 4.32423 4.38567 4.53103 4.60805 4.91680 4.97736 5.01977 5.04464 5.13072 5.19487 5.25091 5.28258 5.38197 5.46746 5.53381 5.54873 5.57174 5.64152 5.66042 5.75450 5.78806 5.86587 5.95798 6.09143 6.13680 6.25483 6.27015 6.37429 6.57080 6.60416 6.65457 6.79374 6.88239 7.63367 7.76149 8.33337 8.38352 9.45126 9.99509 10.34113 11.38513 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043233 B = 0.003340 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.493134 B = 8380.636340 C = 8570.356048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 H 0.059 0.941 4 C -0.117 4.117 5 H 0.093 0.907 6 C 0.542 3.458 7 O -0.539 6.539 8 N -0.613 5.613 9 C 0.098 3.902 10 C -0.155 4.155 11 C 0.172 3.828 12 H 0.066 0.934 13 N -0.715 5.715 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.100 3.900 23 C -0.113 4.113 24 C 0.037 3.963 25 N -0.515 5.515 26 C 0.017 3.983 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.953 5.361 19.143 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 H 0.077 0.923 4 C -0.139 4.139 5 H 0.111 0.889 6 C 0.330 3.670 7 O -0.416 6.416 8 N -0.347 5.347 9 C -0.025 4.025 10 C -0.196 4.196 11 C 0.060 3.940 12 H 0.084 0.916 13 N -0.355 5.355 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.023 4.023 23 C -0.151 4.151 24 C -0.091 4.091 25 N -0.240 5.240 26 C -0.132 4.132 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 10.195 4.477 19.425 22.390 hybrid contribution 0.312 1.021 -1.147 1.567 sum 10.507 5.498 18.278 21.788 Atomic orbital electron populations 1.21955 0.93421 1.03734 1.01561 1.22203 0.96928 0.95294 0.88205 0.92342 1.22252 0.96156 0.99023 0.96451 0.88887 1.19758 0.83834 0.84253 0.79167 1.90688 1.61085 1.21402 1.68419 1.48525 1.35127 1.19836 1.31204 1.22396 0.98762 0.84388 0.96974 1.23569 1.01040 1.02241 0.92780 1.21186 0.93979 0.92471 0.86353 0.91556 1.42374 1.66234 1.17420 1.09515 1.19222 1.27742 0.97351 0.93350 0.90955 1.24780 1.01317 0.96604 0.97968 1.69668 1.50988 1.14981 1.22082 0.86170 0.79448 0.78984 0.81423 1.21656 1.21717 1.20666 1.22336 0.88408 0.99662 0.91944 1.22526 0.99202 0.98740 0.94631 1.23241 0.91076 0.98471 0.96305 1.64706 1.26623 1.26295 1.06333 1.22519 1.00603 0.95239 0.94855 0.90691 0.92586 0.91870 0.91522 0.91703 0.90675 0.90575 0.77937 0.93336 0.91722 0.91188 0.88537 0.90652 0.93694 0.89644 0.91290 0.91181 0.95465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.36 37.16 0.31 -1.49 16 2 C 0.08 0.89 3.08 -66.64 -0.21 0.69 16 3 H 0.06 0.55 7.74 -51.93 -0.40 0.15 16 4 C -0.12 -1.37 2.98 -90.41 -0.27 -1.64 16 5 H 0.09 0.93 6.52 -51.93 -0.34 0.59 16 6 C 0.54 8.36 4.77 -10.99 -0.05 8.31 16 7 O -0.54 -10.30 15.30 5.55 0.08 -10.22 16 8 N -0.61 -9.32 2.82 -170.52 -0.48 -9.80 16 9 C 0.10 1.24 6.64 -2.52 -0.02 1.22 16 10 C -0.15 -2.45 6.77 -24.58 -0.17 -2.61 16 11 C 0.17 3.24 3.62 -66.10 -0.24 3.00 16 12 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 13 N -0.72 -17.33 5.22 -51.65 -0.27 -17.60 16 14 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 18 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.10 1.77 6.62 -3.07 -0.02 1.75 16 23 C -0.11 -1.24 6.56 -24.87 -0.16 -1.40 16 24 C 0.04 0.34 6.56 -1.89 -0.01 0.33 16 25 N -0.52 -5.43 5.18 -230.78 -1.20 -6.63 16 26 C 0.02 0.13 9.40 60.06 0.56 0.70 16 27 H 0.07 1.12 7.04 -51.93 -0.37 0.75 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.78 7.05 -51.93 -0.37 0.42 16 30 H 0.07 0.71 6.76 -51.93 -0.35 0.36 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.39 10.11 7.56 -40.82 -0.31 9.80 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 38 H 0.10 1.30 6.89 -51.93 -0.36 0.94 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.35 7.96 -51.93 -0.41 -0.06 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.03 0.19 8.01 -51.93 -0.42 -0.22 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -31.17 344.02 -8.98 -40.16 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.49 Total: 7.23 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.52 Total: 1.76 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -1.22 Total: -60.94 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.17 -8.98 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968724136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.041 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds