Wall clock time and date at job start Tue Mar 31 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46849 * 110.99676 * 2 1 4 4 C 1.53038 * 109.52316 * 174.15547 * 3 2 1 5 5 C 1.53122 * 109.27814 * 59.18058 * 4 3 2 6 6 C 1.53123 * 109.15747 * 302.34537 * 5 4 3 7 7 C 1.46844 * 111.00696 * 235.78849 * 2 1 3 8 8 H 1.09001 * 109.45825 * 65.83066 * 7 2 1 9 9 C 1.50705 * 109.46002 * 305.85581 * 7 2 1 10 10 O 1.21277 * 119.99719 * 339.99695 * 9 7 2 11 11 N 1.34773 * 119.99622 * 159.99416 * 9 7 2 12 12 C 1.47425 * 125.65369 * 359.97438 * 11 9 7 13 13 C 1.54907 * 104.83360 * 155.91553 * 12 11 9 14 14 C 1.55154 * 101.58470 * 37.00605 * 13 12 11 15 15 H 1.09004 * 110.71599 * 83.04023 * 14 13 12 16 16 N 1.46498 * 110.71996 * 206.13736 * 14 13 12 17 17 C 1.36943 * 119.99752 * 273.26929 * 16 14 13 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 C 1.47032 * 125.64478 * 180.02562 * 11 9 7 26 26 H 1.09008 * 109.47161 * 184.21033 * 1 2 3 27 27 H 1.08994 * 109.47567 * 304.21210 * 1 2 3 28 28 H 1.09000 * 109.47337 * 64.21388 * 1 2 3 29 29 H 1.08991 * 109.46230 * 294.17202 * 3 2 1 30 30 H 1.08997 * 109.46307 * 54.15409 * 3 2 1 31 31 H 1.08998 * 109.50835 * 179.11779 * 4 3 2 32 32 H 1.09000 * 109.50808 * 299.19958 * 4 3 2 33 33 H 1.09000 * 109.52557 * 62.24512 * 5 4 3 34 34 H 1.08993 * 109.52564 * 182.37646 * 5 4 3 35 35 H 1.09000 * 109.50148 * 297.71006 * 6 5 4 36 36 H 1.09007 * 109.49878 * 177.59257 * 6 5 4 37 37 H 1.09004 * 110.36498 * 37.07331 * 12 11 9 38 38 H 1.09003 * 110.45527 * 274.79907 * 12 11 9 39 39 H 1.09007 * 111.00196 * 278.93303 * 13 12 11 40 40 H 1.08997 * 111.04057 * 155.10139 * 13 12 11 41 41 H 0.97001 * 120.00384 * 93.55285 * 16 14 13 42 42 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.88003 * 61.59821 * 25 11 9 44 44 H 1.09003 * 109.88091 * 300.43492 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3343 0.1469 5 6 4.1188 0.5371 -1.0142 6 6 3.5182 -0.8714 -1.0206 7 6 1.9954 -0.7708 -1.1336 8 1 1.7327 -0.2707 -2.0659 9 6 1.3983 -2.1544 -1.1205 10 8 0.9166 -2.5972 -0.0994 11 7 1.3998 -2.8996 -2.2434 12 6 1.9489 -2.4870 -3.5479 13 6 2.2765 -3.8134 -4.2778 14 6 1.1008 -4.7179 -3.8230 15 1 0.2196 -4.5446 -4.4408 16 7 1.4886 -6.1301 -3.8609 17 6 1.3546 -6.8461 -5.0206 18 1 0.9672 -6.3684 -5.9084 19 6 1.7166 -8.1857 -5.0550 20 7 2.1882 -8.7679 -3.9728 21 14 1.5345 -9.1621 -6.6370 22 1 2.7867 -9.0599 -7.4288 23 1 1.2694 -10.5866 -6.3118 24 1 0.4026 -8.6161 -7.4281 25 6 0.8529 -4.2585 -2.3707 26 1 -0.3634 -1.0250 0.0755 27 1 -0.3634 0.5778 0.8498 28 1 -0.3634 0.4470 -0.9253 29 1 1.7324 1.8608 -0.9375 30 1 1.5634 1.9257 0.8330 31 1 3.9098 2.3513 0.1311 32 1 3.7812 0.8576 1.0911 33 1 3.8887 1.0355 -1.9559 34 1 5.1998 0.4726 -0.8909 35 1 3.7814 -1.3835 -0.0951 36 1 3.9100 -1.4302 -1.8706 37 1 2.8548 -1.8968 -3.4086 38 1 1.2087 -1.9175 -4.1099 39 1 3.2322 -4.2175 -3.9437 40 1 2.2690 -3.6772 -5.3592 41 1 1.8364 -6.5592 -3.0635 42 1 2.4416 -9.7039 -3.9969 43 1 -0.2169 -4.2486 -2.1625 44 1 1.3614 -4.9291 -1.6779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969098874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:15 Heat of formation + Delta-G solvation = -14.034407 kcal Electronic energy + Delta-G solvation = -22946.938710 eV Core-core repulsion = 19706.381585 eV Total energy + Delta-G solvation = -3240.557125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47622 -38.50765 -37.01171 -34.21892 -33.60943 -31.91524 -30.98930 -29.53275 -27.87988 -26.85739 -24.51587 -23.43366 -22.97459 -22.50341 -20.33582 -19.89304 -18.99143 -17.41748 -17.08866 -16.19349 -15.71803 -15.27969 -14.93674 -14.65050 -14.54612 -14.25632 -13.83091 -13.50472 -13.34150 -13.20136 -12.96357 -12.78006 -12.50694 -12.19752 -11.88906 -11.75861 -11.59624 -11.49800 -11.19364 -11.05908 -10.92258 -10.86936 -10.70563 -10.60262 -10.36192 -10.10082 -9.77898 -9.43641 -8.98404 -8.48666 -8.35218 -7.06168 -5.83582 -3.14467 2.74626 3.01469 3.39660 3.44928 3.46908 3.79163 4.42372 4.52982 4.54986 4.69105 4.84301 4.91647 4.99671 5.02127 5.22733 5.24654 5.31836 5.35843 5.36854 5.45343 5.51750 5.53910 5.55297 5.68520 5.71270 5.74903 5.87036 5.90869 5.96689 6.01003 6.12212 6.14989 6.24466 6.35631 6.54663 6.57513 6.82628 6.88577 6.92211 7.63413 7.73112 8.33324 8.36741 9.45184 9.99477 10.34161 11.38590 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036730 B = 0.003443 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.145676 B = 8129.657192 C = 8393.888746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.057 3.943 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.109 4.109 7 C 0.076 3.924 8 H 0.059 0.941 9 C 0.529 3.471 10 O -0.526 6.526 11 N -0.612 5.612 12 C 0.095 3.905 13 C -0.154 4.154 14 C 0.172 3.828 15 H 0.063 0.937 16 N -0.716 5.716 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.102 3.898 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.019 0.981 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.064 0.936 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 21.958 4.300 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.071 4.071 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.147 4.147 7 C -0.035 4.035 8 H 0.077 0.923 9 C 0.316 3.684 10 O -0.402 6.402 11 N -0.347 5.347 12 C -0.028 4.028 13 C -0.195 4.195 14 C 0.060 3.940 15 H 0.081 0.919 16 N -0.357 5.357 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.021 4.021 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.376 21.423 5.194 22.086 hybrid contribution -0.209 -0.301 -1.451 1.496 sum 1.167 21.122 3.743 21.483 Atomic orbital electron populations 1.22589 0.86576 1.04370 0.99762 1.61621 1.08300 1.12816 1.41868 1.22134 0.95737 0.88729 1.00509 1.21621 0.94361 1.00117 0.99598 1.21575 1.00250 0.95178 0.98625 1.21579 0.91579 0.97949 1.03639 1.21536 0.96485 0.92113 0.93409 0.92350 1.20020 0.79592 0.86601 0.82199 1.90670 1.45939 1.72544 1.31069 1.48510 1.59291 1.16992 1.09911 1.22458 0.97863 0.98639 0.83835 1.23558 1.02100 0.93877 0.99956 1.21180 0.94950 0.86201 0.91662 0.91865 1.42369 1.76336 1.04417 1.12538 1.19207 1.36629 0.92146 0.89661 0.90970 1.24780 1.01582 0.96919 0.97370 1.69669 1.48977 1.11931 1.27116 0.86169 0.77705 0.79521 0.82626 1.21639 1.21721 1.20684 1.22280 0.98439 0.82038 0.99338 0.89165 0.91338 0.96285 0.95001 0.90402 0.91414 0.90811 0.92060 0.91179 0.90248 0.90658 0.91266 0.91813 0.90550 0.90555 0.77918 0.93330 0.91717 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.10 60.06 0.55 0.72 16 2 N -0.52 -6.40 4.51 -236.33 -1.07 -7.47 16 3 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 4 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 5 C -0.12 -0.99 6.00 -26.60 -0.16 -1.15 16 6 C -0.11 -1.19 5.26 -26.65 -0.14 -1.33 16 7 C 0.08 0.95 1.52 -68.88 -0.10 0.84 16 8 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 9 C 0.53 8.43 6.29 -10.98 -0.07 8.36 16 10 O -0.53 -10.25 14.85 5.56 0.08 -10.17 16 11 N -0.61 -9.51 3.33 -170.51 -0.57 -10.08 16 12 C 0.10 1.23 6.39 -2.53 -0.02 1.21 16 13 C -0.15 -2.45 6.77 -24.58 -0.17 -2.61 16 14 C 0.17 3.26 3.59 -66.10 -0.24 3.02 16 15 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 16 N -0.72 -17.37 5.25 -51.65 -0.27 -17.64 16 17 C -0.25 -6.57 9.98 -15.06 -0.15 -6.72 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 21 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.10 1.83 6.62 -3.06 -0.02 1.81 16 26 H 0.09 1.33 5.62 -51.92 -0.29 1.04 16 27 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.79 6.48 -51.93 -0.34 0.45 16 37 H 0.07 0.75 5.99 -51.93 -0.31 0.44 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.34 8.14 -51.92 -0.42 0.91 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.39 10.13 7.51 -40.82 -0.31 9.82 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 1.41 7.69 -51.93 -0.40 1.01 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -31.16 341.40 -9.27 -40.44 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.50 Total: 6.72 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.80 Total: 3.14 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -1.18 Total: -62.10 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.16 -9.27 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969098874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.402 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds