Wall clock time and date at job start Tue Mar 31 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46844 * 111.00112 * 2 1 4 4 C 1.53038 * 109.52438 * 185.83351 * 3 2 1 5 5 C 1.53116 * 109.28092 * 300.82536 * 4 3 2 6 6 C 1.53123 * 109.16195 * 57.65371 * 5 4 3 7 7 C 1.46853 * 110.99893 * 124.21149 * 2 1 3 8 8 H 1.09004 * 109.44915 * 294.17626 * 7 2 1 9 9 C 1.50702 * 109.46254 * 54.14426 * 7 2 1 10 10 O 1.21283 * 120.00095 * 20.05355 * 9 7 2 11 11 N 1.34779 * 120.00279 * 200.05528 * 9 7 2 12 12 C 1.47431 * 125.64435 * 0.02562 * 11 9 7 13 13 C 1.54902 * 104.83107 * 155.83782 * 12 11 9 14 14 C 1.55154 * 101.58296 * 37.00684 * 13 12 11 15 15 H 1.08998 * 110.72231 * 83.03833 * 14 13 12 16 16 N 1.46506 * 110.72213 * 206.13667 * 14 13 12 17 17 C 1.36938 * 119.99589 * 271.15931 * 16 14 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47274 * 89.99913 * 21 19 17 23 23 H 1.48505 * 109.47015 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99904 * 21 19 17 25 25 C 1.47317 * 125.61779 * 180.16506 * 11 9 7 26 26 H 1.08996 * 109.47031 * 295.78569 * 1 2 3 27 27 H 1.09004 * 109.46867 * 55.79295 * 1 2 3 28 28 H 1.09002 * 109.47316 * 175.78745 * 1 2 3 29 29 H 1.09004 * 109.46041 * 65.82169 * 3 2 1 30 30 H 1.08998 * 109.46448 * 305.85669 * 3 2 1 31 31 H 1.08994 * 109.50304 * 180.88217 * 4 3 2 32 32 H 1.09001 * 109.53215 * 60.78417 * 4 3 2 33 33 H 1.08993 * 109.52290 * 297.74821 * 5 4 3 34 34 H 1.09001 * 109.57223 * 177.58974 * 5 4 3 35 35 H 1.09001 * 109.50299 * 182.40673 * 6 5 4 36 36 H 1.08997 * 109.53526 * 62.30140 * 6 5 4 37 37 H 1.08999 * 110.36806 * 36.99732 * 12 11 9 38 38 H 1.09001 * 110.36377 * 274.67571 * 12 11 9 39 39 H 1.08999 * 111.00377 * 278.93266 * 13 12 11 40 40 H 1.09001 * 111.00664 * 155.08402 * 13 12 11 41 41 H 0.96999 * 120.00080 * 91.15421 * 16 14 13 42 42 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.05939 * 61.75124 * 25 11 9 44 44 H 1.08998 * 109.84579 * 300.48963 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1466 5 6 4.1188 0.5369 1.0145 6 6 3.5181 -0.8716 1.0209 7 6 1.9953 -0.7708 1.1338 8 1 1.7324 -0.2707 2.0659 9 6 1.3982 -2.1545 1.1206 10 8 0.9173 -2.5977 0.0992 11 7 1.3985 -2.8994 2.2438 12 6 1.9466 -2.4862 3.5486 13 6 1.1851 -3.3453 4.5885 14 6 1.0499 -4.6962 3.8375 15 1 1.9572 -5.2904 3.9460 16 7 -0.1162 -5.4419 4.3177 17 6 0.0080 -6.2972 5.3798 18 1 0.9656 -6.4225 5.8632 19 6 -1.0968 -7.0041 5.8345 20 7 -2.2648 -6.8480 5.2483 21 14 -0.9273 -8.1715 7.2829 22 1 -1.1897 -7.4352 8.5455 23 1 -1.9066 -9.2792 7.1431 24 1 0.4491 -8.7283 7.3115 25 6 0.8538 -4.2623 2.3695 26 1 -0.3633 0.4470 0.9253 27 1 -0.3633 0.5778 -0.8499 28 1 -0.3634 -1.0249 -0.0755 29 1 1.7325 1.8608 0.9376 30 1 1.5635 1.9257 -0.8329 31 1 3.9099 2.3511 -0.1308 32 1 3.7820 0.8571 -1.0905 33 1 3.8887 1.0353 1.9561 34 1 5.1999 0.4713 0.8918 35 1 3.9099 -1.4304 1.8708 36 1 3.7813 -1.3843 0.0957 37 1 1.7580 -1.4265 3.7209 38 1 3.0155 -2.6945 3.5942 39 1 0.2056 -2.9191 4.8054 40 1 1.7692 -3.4626 5.5014 41 1 -0.9763 -5.3296 3.8833 42 1 -3.0369 -7.3417 5.5662 43 1 1.3901 -4.9419 1.7073 44 1 -0.2077 -4.2608 2.1220 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969098876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:17 Heat of formation + Delta-G solvation = -14.488233 kcal Electronic energy + Delta-G solvation = -22934.003003 eV Core-core repulsion = 19693.426198 eV Total energy + Delta-G solvation = -3240.576804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45820 -38.49937 -37.00068 -34.21354 -33.61153 -31.91614 -30.98290 -29.52583 -27.89535 -26.83847 -24.51908 -23.42509 -22.97118 -22.50450 -20.29573 -19.97025 -18.97900 -17.41316 -17.10076 -16.10294 -15.74746 -15.36132 -14.84341 -14.71351 -14.49647 -14.35369 -13.62508 -13.47013 -13.36671 -13.24224 -13.18439 -12.60502 -12.37043 -12.30253 -11.93773 -11.72711 -11.67496 -11.43122 -11.19653 -11.08132 -10.94138 -10.87489 -10.72188 -10.62262 -10.35660 -10.10850 -9.78479 -9.43093 -8.99140 -8.45244 -8.36808 -7.06962 -5.84213 -3.15057 2.75579 3.01698 3.39341 3.44691 3.46619 3.80007 4.42250 4.52595 4.54455 4.67640 4.82271 4.90425 4.98174 5.03496 5.22456 5.28917 5.33649 5.33932 5.38428 5.46626 5.53326 5.53880 5.56197 5.67625 5.69888 5.74969 5.85283 5.88553 5.93795 6.05510 6.11265 6.13297 6.24068 6.35193 6.54325 6.57323 6.83244 6.87703 6.93531 7.62960 7.73370 8.32726 8.37149 9.44542 9.98761 10.33417 11.37973 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037764 B = 0.003443 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.276373 B = 8130.664014 C = 8493.889205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.521 5.521 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.075 3.925 8 H 0.060 0.940 9 C 0.528 3.472 10 O -0.527 6.527 11 N -0.613 5.613 12 C 0.098 3.902 13 C -0.154 4.154 14 C 0.172 3.828 15 H 0.065 0.935 16 N -0.716 5.716 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.102 3.898 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.066 0.934 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.012 17.436 -7.246 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.145 4.145 7 C -0.037 4.037 8 H 0.077 0.923 9 C 0.316 3.684 10 O -0.403 6.403 11 N -0.348 5.348 12 C -0.025 4.025 13 C -0.196 4.196 14 C 0.060 3.940 15 H 0.083 0.917 16 N -0.356 5.356 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.021 4.021 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.924 16.863 -8.163 22.208 hybrid contribution -0.609 -0.134 1.552 1.672 sum 11.315 16.730 -6.611 21.251 Atomic orbital electron populations 1.22597 0.86451 1.04465 0.99849 1.61636 1.08395 1.12782 1.41803 1.22137 0.95669 0.88792 1.00569 1.21615 0.94412 1.00106 0.99530 1.21573 1.00148 0.95224 0.98693 1.21532 0.91625 0.97922 1.03415 1.21559 0.96422 0.92207 0.93505 0.92262 1.20016 0.79597 0.86563 0.82258 1.90672 1.45939 1.72503 1.31162 1.48597 1.59270 1.17036 1.09851 1.22423 0.97941 0.99101 0.83081 1.23566 1.00415 0.98154 0.97451 1.21186 0.92733 0.91144 0.88953 0.91662 1.42371 1.06474 1.49500 1.37270 1.19218 0.95235 1.16690 1.06520 0.90937 1.24781 0.95587 1.00518 0.99774 1.69667 0.99629 1.45352 1.43080 0.86166 0.77135 0.80460 0.82246 1.21651 1.21718 1.20654 1.22362 0.99406 0.81513 0.98850 0.96173 0.91316 0.89112 0.94977 0.90385 0.91421 0.90848 0.92035 0.91247 0.90848 0.90361 0.91589 0.91556 0.90697 0.90509 0.77947 0.93333 0.91570 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.10 60.07 0.55 0.72 16 2 N -0.52 -6.50 4.51 -236.32 -1.07 -7.56 16 3 C 0.06 0.53 5.46 -3.83 -0.02 0.50 16 4 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 5 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 6 C -0.11 -1.10 5.34 -26.65 -0.14 -1.24 16 7 C 0.07 0.93 1.66 -68.87 -0.11 0.81 16 8 H 0.06 0.69 6.91 -51.93 -0.36 0.33 16 9 C 0.53 8.42 6.28 -10.98 -0.07 8.35 16 10 O -0.53 -10.27 14.85 5.56 0.08 -10.19 16 11 N -0.61 -9.51 3.33 -170.28 -0.57 -10.07 16 12 C 0.10 1.26 6.24 -2.53 -0.02 1.24 16 13 C -0.15 -2.46 6.77 -24.59 -0.17 -2.63 16 14 C 0.17 3.25 3.59 -66.09 -0.24 3.01 16 15 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 16 N -0.72 -17.35 5.24 -51.65 -0.27 -17.62 16 17 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 21 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.10 1.82 6.64 -2.90 -0.02 1.80 16 26 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 28 H 0.09 1.42 5.63 -51.93 -0.29 1.12 16 29 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.69 7.43 -51.93 -0.39 0.31 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.73 6.92 -51.93 -0.36 0.37 16 38 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.39 10.11 7.53 -40.82 -0.31 9.80 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -31.16 342.37 -9.32 -40.48 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.55 Total: 6.63 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.81 Total: 3.27 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -1.18 Total: -62.16 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.16 -9.32 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969098876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.989 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds