Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.87493 * 2 1 4 4 C 1.54324 * 109.87966 * 238.98398 * 2 1 3 5 5 H 1.09003 * 110.72310 * 336.92845 * 4 2 1 6 6 N 1.46499 * 110.71965 * 100.02934 * 4 2 1 7 7 C 1.36939 * 119.99547 * 204.99856 * 6 4 2 8 8 H 1.07993 * 120.00716 * 359.97438 * 7 6 4 9 9 C 1.38817 * 119.99459 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55164 * 102.93900 * 218.38795 * 4 2 1 16 16 C 1.54907 * 101.57918 * 35.50494 * 15 4 2 17 17 N 1.47017 * 109.88212 * 121.17465 * 2 1 3 18 18 C 1.34780 * 125.64902 * 298.39418 * 17 2 1 19 19 O 1.21275 * 119.99960 * 359.97438 * 18 17 2 20 20 C 1.50705 * 119.99880 * 180.02562 * 18 17 2 21 21 N 1.46899 * 109.46790 * 179.97438 * 20 18 17 22 22 C 1.48537 * 111.00058 * 52.60392 * 21 20 18 23 23 C 1.54937 * 103.22600 * 159.71948 * 22 21 20 24 24 C 1.54599 * 102.92222 * 322.58532 * 23 22 21 25 25 C 1.47898 * 110.99606 * 169.99956 * 21 20 18 26 26 H 1.09003 * 109.47137 * 181.01544 * 1 2 3 27 27 H 1.08997 * 109.46924 * 301.01515 * 1 2 3 28 28 H 1.08997 * 109.46916 * 61.01767 * 1 2 3 29 29 H 0.96998 * 120.00185 * 24.99239 * 6 4 2 30 30 H 0.96993 * 120.00007 * 0.02562 * 10 9 7 31 31 H 1.08996 * 110.99888 * 153.57763 * 15 4 2 32 32 H 1.08995 * 111.00506 * 277.42506 * 15 4 2 33 33 H 1.09001 * 110.36339 * 204.14690 * 16 15 4 34 34 H 1.09002 * 110.46442 * 81.87783 * 16 15 4 35 35 H 1.09001 * 109.46680 * 299.99821 * 20 18 17 36 36 H 1.08996 * 109.47035 * 59.99652 * 20 18 17 37 37 H 1.08996 * 110.66519 * 278.15504 * 22 21 20 38 38 H 1.08997 * 110.66406 * 41.28548 * 22 21 20 39 39 H 1.08997 * 110.72662 * 204.23004 * 23 22 21 40 40 H 1.08995 * 110.87926 * 81.01075 * 23 22 21 41 41 H 1.09003 * 110.31023 * 263.04286 * 24 23 22 42 42 H 1.09003 * 110.39283 * 140.91677 * 24 23 22 43 43 H 1.09000 * 109.92299 * 333.50898 * 25 21 20 44 44 H 1.09006 * 109.91617 * 94.60911 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3039 -1.4415 -1.6221 6 7 2.4555 0.1992 -2.2872 7 6 2.4582 -0.1896 -3.6003 8 1 2.1654 -1.1944 -3.8666 9 6 2.8373 0.7080 -4.5890 10 7 3.1937 1.9327 -4.2646 11 14 2.8417 0.1774 -6.3801 12 1 4.1722 -0.3838 -6.7269 13 1 2.5589 1.3512 -7.2448 14 1 1.7976 -0.8569 -6.5926 15 6 3.2877 -1.5133 -0.6945 16 6 2.8145 -1.8804 0.7342 17 7 2.0300 -0.7157 1.1829 18 6 1.8074 -0.3654 2.4652 19 8 1.1437 0.6174 2.7189 20 6 2.3843 -1.1944 3.5838 21 7 2.0020 -0.6079 4.8752 22 6 0.5327 -0.4041 4.9532 23 6 0.2691 -0.3043 6.4767 24 6 1.2548 -1.3389 7.0667 25 6 2.3429 -1.5163 5.9914 26 1 -0.3633 -1.0275 0.0182 27 1 -0.3633 0.5295 0.8807 28 1 -0.3633 0.4979 -0.8990 29 1 2.7187 1.1016 -2.0481 30 1 3.1918 2.2081 -3.3345 31 1 3.4852 -2.4092 -1.2830 32 1 4.1654 -0.8680 -0.6616 33 1 3.6716 -2.0358 1.3894 34 1 2.1891 -2.7729 0.7109 35 1 1.9988 -2.2118 3.5179 36 1 3.4709 -1.2114 3.5002 37 1 0.2454 0.5200 4.4517 38 1 0.0031 -1.2556 4.5261 39 1 -0.7605 -0.5767 6.7087 40 1 0.4942 0.6965 6.8451 41 1 0.7456 -2.2852 7.2494 42 1 1.6936 -0.9616 7.9904 43 1 2.3534 -2.5482 5.6406 44 1 3.3188 -1.2531 6.3996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987518148.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = -8.253345 kcal Electronic energy + Delta-G solvation = -22780.421065 eV Core-core repulsion = 19540.114625 eV Total energy + Delta-G solvation = -3240.306439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31624 -38.80975 -37.18062 -34.43655 -32.68000 -31.55255 -30.95759 -29.06564 -28.97613 -26.51788 -25.06284 -23.10527 -22.54649 -21.41639 -21.03167 -20.22368 -18.82150 -17.49554 -16.94604 -16.48975 -15.88241 -15.72996 -15.05932 -14.83223 -14.30296 -13.96845 -13.74310 -13.50950 -13.37397 -12.92489 -12.81737 -12.51352 -12.35091 -12.23798 -12.10713 -11.69892 -11.68919 -11.48519 -11.27339 -11.03276 -10.96013 -10.78839 -10.68023 -10.54335 -10.24118 -10.05038 -9.47835 -9.22854 -8.97053 -8.60465 -8.43286 -7.12884 -6.16379 -3.18324 2.73262 2.96999 3.48580 3.53113 3.67329 3.87122 4.40365 4.46503 4.61310 4.68206 4.72946 4.92447 5.03705 5.10667 5.15954 5.18436 5.27530 5.33805 5.40931 5.47379 5.51994 5.57881 5.63135 5.64563 5.69306 5.81434 5.84637 5.93940 5.98072 5.98579 6.16469 6.19996 6.35429 6.49393 6.51886 6.60904 6.71079 6.78233 6.81500 7.70379 7.74649 8.32635 8.68661 9.13174 9.99667 10.13410 11.31513 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045786 B = 0.003267 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.397667 B = 8568.556122 C = 8812.164606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.074 0.926 4 C 0.182 3.818 5 H 0.068 0.932 6 N -0.726 5.726 7 C -0.336 4.336 8 H 0.067 0.933 9 C -0.042 4.042 10 N -0.940 5.940 11 Si 1.083 2.917 12 H -0.295 1.295 13 H -0.287 1.287 14 H -0.294 1.294 15 C -0.155 4.155 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.528 6.528 20 C 0.033 3.967 21 N -0.502 5.502 22 C 0.032 3.968 23 C -0.126 4.126 24 C -0.131 4.131 25 C 0.034 3.966 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.369 0.631 30 H 0.256 0.744 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -10.537 19.445 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.092 0.908 4 C 0.070 3.930 5 H 0.086 0.914 6 N -0.367 5.367 7 C -0.467 4.467 8 H 0.085 0.915 9 C -0.240 4.240 10 N -0.585 5.585 11 Si 0.914 3.086 12 H -0.223 1.223 13 H -0.213 1.213 14 H -0.221 1.221 15 C -0.197 4.197 16 C -0.025 4.025 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.405 6.405 20 C -0.099 4.099 21 N -0.227 5.227 22 C -0.095 4.095 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.094 4.094 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.203 0.797 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.784 -9.189 18.022 20.420 hybrid contribution -0.417 -1.302 1.534 2.055 sum -3.200 -10.491 19.557 22.422 Atomic orbital electron populations 1.22031 0.94876 1.01520 1.02672 1.21940 0.94472 0.96776 0.84582 0.90769 1.21179 0.93557 0.91403 0.86852 0.91379 1.42364 1.80347 1.11274 1.02706 1.20039 1.43861 0.98955 0.83826 0.91535 1.25806 0.99284 0.94425 1.04468 1.70846 1.50362 1.17792 1.19502 0.83191 0.75841 0.74787 0.74787 1.22261 1.21344 1.22097 1.23549 1.01286 1.01788 0.93033 1.22387 0.94583 0.88335 0.97238 1.48575 1.52327 1.28663 1.04921 1.20024 0.80724 0.85576 0.82219 1.90615 1.39867 1.27444 1.82576 1.22191 1.02273 0.96191 0.89212 1.64676 1.15523 1.41881 1.00597 1.23524 0.87012 1.03062 0.95945 1.22526 0.98691 0.99747 0.95454 1.22393 0.96579 0.99479 0.98448 1.22933 0.99721 0.94747 0.91991 0.93173 0.91972 0.91251 0.79732 0.93224 0.90474 0.90779 0.91332 0.91730 0.92043 0.87911 0.86871 0.94596 0.91260 0.90704 0.91661 0.91017 0.93840 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.09 37.16 0.34 -2.23 16 2 C 0.13 2.23 3.21 -66.95 -0.22 2.02 16 3 H 0.07 1.49 7.71 -51.93 -0.40 1.09 16 4 C 0.18 3.48 3.14 -66.09 -0.21 3.28 16 5 H 0.07 1.33 7.80 -51.93 -0.40 0.92 16 6 N -0.73 -17.57 5.22 -51.65 -0.27 -17.83 16 7 C -0.34 -9.11 9.96 -15.06 -0.15 -9.26 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 9 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 10 N -0.94 -28.71 13.70 55.49 0.76 -27.95 16 11 Si 1.08 25.43 29.92 -169.99 -5.09 20.34 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 15 C -0.16 -2.51 6.77 -24.58 -0.17 -2.67 16 16 C 0.10 1.25 6.69 -2.53 -0.02 1.23 16 17 N -0.61 -9.29 3.06 -163.02 -0.50 -9.79 16 18 C 0.53 8.06 7.35 -10.98 -0.08 7.98 16 19 O -0.53 -9.67 12.57 5.56 0.07 -9.60 16 20 C 0.03 0.38 4.52 -4.97 -0.02 0.36 16 21 N -0.50 -6.10 5.26 -231.88 -1.22 -7.32 16 22 C 0.03 0.38 5.30 -1.90 -0.01 0.37 16 23 C -0.13 -1.19 7.06 -24.87 -0.18 -1.37 16 24 C -0.13 -1.05 6.93 -25.37 -0.18 -1.23 16 25 C 0.03 0.31 6.69 -2.75 -0.02 0.29 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.07 6.90 -51.93 -0.36 0.71 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.37 9.40 6.39 -40.82 -0.26 9.14 16 30 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.62 7.81 -51.93 -0.41 0.21 16 36 H 0.10 1.08 7.85 -51.93 -0.41 0.67 16 37 H 0.11 1.68 5.97 -51.93 -0.31 1.37 16 38 H 0.04 0.43 8.02 -51.93 -0.42 0.02 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.04 0.35 7.57 -51.93 -0.39 -0.04 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -31.67 342.80 -9.53 -41.20 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.46 Total: 8.29 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.00 Total: -2.50 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -1.23 Total: -62.89 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.34 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.67 -9.53 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987518148.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.945 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds