Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.87386 * 2 1 4 4 C 1.54322 * 109.87917 * 121.17956 * 2 1 3 5 5 H 1.08995 * 110.72403 * 23.06704 * 4 2 1 6 6 N 1.46498 * 110.71797 * 259.97118 * 4 2 1 7 7 C 1.36937 * 120.00106 * 155.00133 * 6 4 2 8 8 H 1.07997 * 119.99857 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00161 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99878 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00112 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47357 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47307 * 119.99954 * 11 9 7 14 14 H 1.48502 * 109.47207 * 239.99890 * 11 9 7 15 15 C 1.55154 * 102.94204 * 141.61071 * 4 2 1 16 16 C 1.54910 * 101.58031 * 324.49480 * 15 4 2 17 17 N 1.47019 * 109.87970 * 238.98554 * 2 1 3 18 18 C 1.34775 * 125.65013 * 61.62618 * 17 2 1 19 19 O 1.21276 * 120.00034 * 359.97438 * 18 17 2 20 20 C 1.50705 * 119.99931 * 179.97438 * 18 17 2 21 21 N 1.46896 * 109.46932 * 179.97438 * 20 18 17 22 22 C 1.48538 * 111.00334 * 52.60196 * 21 20 18 23 23 C 1.54932 * 103.22879 * 159.72012 * 22 21 20 24 24 C 1.54596 * 102.92407 * 322.58704 * 23 22 21 25 25 C 1.47901 * 111.00212 * 169.99802 * 21 20 18 26 26 H 1.08999 * 109.47585 * 179.55968 * 1 2 3 27 27 H 1.09003 * 109.47393 * 299.56026 * 1 2 3 28 28 H 1.08999 * 109.47302 * 59.56089 * 1 2 3 29 29 H 0.97007 * 120.00254 * 335.00207 * 6 4 2 30 30 H 0.97000 * 119.99592 * 180.02562 * 10 9 7 31 31 H 1.09002 * 111.00945 * 206.42287 * 15 4 2 32 32 H 1.08999 * 111.00353 * 82.56825 * 15 4 2 33 33 H 1.08998 * 110.36709 * 278.17139 * 16 15 4 34 34 H 1.09005 * 110.36466 * 155.84673 * 16 15 4 35 35 H 1.09002 * 109.46910 * 299.99521 * 20 18 17 36 36 H 1.08995 * 109.47630 * 59.99841 * 20 18 17 37 37 H 1.08998 * 110.66601 * 278.15964 * 22 21 20 38 38 H 1.08999 * 110.66299 * 41.28196 * 22 21 20 39 39 H 1.09004 * 110.72456 * 204.22527 * 23 22 21 40 40 H 1.09004 * 110.88085 * 81.01572 * 23 22 21 41 41 H 1.09005 * 110.30770 * 263.04531 * 24 23 22 42 42 H 1.09002 * 110.31366 * 140.87187 * 24 23 22 43 43 H 1.09004 * 109.91737 * 333.50687 * 25 21 20 44 44 H 1.08995 * 109.91883 * 94.79999 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7514 1.2416 5 1 1.3039 -1.4460 1.6180 6 7 2.4554 0.1927 2.2878 7 6 2.4581 -0.1997 3.5997 8 1 2.1653 -1.2053 3.8631 9 6 2.8372 0.6950 4.5910 10 7 3.1936 1.9207 4.2699 11 14 2.8416 0.1595 6.3805 12 1 2.4026 -1.2560 6.4748 13 1 4.2138 0.2905 6.9331 14 1 1.9114 1.0184 7.1566 15 6 3.2875 -1.5153 0.6902 16 6 2.8144 -1.8784 -0.7394 17 7 2.0299 -0.7124 -1.1849 18 6 1.8076 -0.3583 -2.4662 19 8 1.1434 0.6248 -2.7171 20 6 2.3844 -1.1843 -3.5871 21 7 2.0014 -0.5946 -4.8769 22 6 2.3542 0.8473 -4.9288 23 6 2.3838 1.1506 -6.4478 24 6 2.9924 -0.1385 -7.0460 25 6 2.7389 -1.2304 -5.9902 26 1 -0.3634 -1.0276 -0.0079 27 1 -0.3634 0.5070 0.8939 28 1 -0.3634 0.5206 -0.8860 29 1 2.7188 1.0959 2.0511 30 1 3.4588 2.5458 4.9626 31 1 3.4851 -2.4130 1.2761 32 1 4.1653 -0.8698 0.6592 33 1 2.1885 -2.7705 -0.7168 34 1 3.6716 -2.0318 -1.3951 35 1 3.4711 -1.2017 -3.5035 36 1 1.9988 -2.2018 -3.5244 37 1 1.5927 1.4478 -4.4313 38 1 3.3337 1.0200 -4.4828 39 1 3.0199 2.0107 -6.6572 40 1 1.3766 1.3153 -6.8308 41 1 4.0627 -0.0112 -7.2091 42 1 2.4941 -0.3936 -7.9813 43 1 3.6885 -1.6253 -5.6290 44 1 2.1403 -2.0325 -6.4219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987518149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -8.775491 kcal Electronic energy + Delta-G solvation = -22742.184126 eV Core-core repulsion = 19501.855044 eV Total energy + Delta-G solvation = -3240.329081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24763 -38.74452 -37.09884 -34.14922 -32.60425 -31.49710 -30.87478 -29.23499 -28.93045 -26.48520 -25.21675 -23.07572 -22.47013 -21.35553 -20.98006 -20.09604 -18.73495 -17.28987 -16.93751 -16.28061 -15.94853 -15.72251 -14.89399 -14.68352 -14.35052 -13.77779 -13.54733 -13.44909 -13.31795 -12.93226 -12.72505 -12.55737 -12.21983 -12.06635 -11.86800 -11.70723 -11.57560 -11.45783 -11.27289 -11.09199 -10.89960 -10.86703 -10.74126 -10.60727 -10.24287 -10.02762 -9.78551 -9.36320 -8.97458 -8.55251 -8.36251 -7.05741 -5.84018 -3.14503 2.79642 3.03941 3.39211 3.44981 3.47285 3.92460 4.45766 4.51048 4.52865 4.73312 4.77475 4.98582 5.09713 5.16098 5.21306 5.26388 5.35163 5.38758 5.47967 5.51969 5.57526 5.62123 5.66316 5.69881 5.79341 5.85902 5.93740 6.02553 6.07216 6.11510 6.23167 6.28683 6.45479 6.57226 6.61860 6.69939 6.75391 6.84434 6.90180 7.63915 7.78214 8.32995 8.39536 9.44856 9.99275 10.33911 11.38192 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.003310 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.921664 B = 8456.715671 C = 8598.634604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.156 4.156 16 C 0.098 3.902 17 N -0.610 5.610 18 C 0.526 3.474 19 O -0.529 6.529 20 C 0.032 3.968 21 N -0.502 5.502 22 C 0.031 3.969 23 C -0.126 4.126 24 C -0.131 4.131 25 C 0.034 3.966 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.386 0.614 30 H 0.256 0.744 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -7.906 -19.386 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.314 3.686 19 O -0.406 6.406 20 C -0.099 4.099 21 N -0.227 5.227 22 C -0.096 4.096 23 C -0.164 4.164 24 C -0.169 4.169 25 C -0.094 4.094 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.595 -7.506 -19.447 20.854 hybrid contribution 1.220 -0.055 1.100 1.643 sum 0.625 -7.561 -18.348 19.854 Atomic orbital electron populations 1.22033 0.94878 1.01552 1.02684 1.21947 0.94482 0.96844 0.84392 0.90609 1.21245 0.93496 0.91610 0.87192 0.91431 1.42363 1.79261 1.11873 1.01933 1.19259 1.38361 0.96927 0.82905 0.90924 1.24773 1.01922 0.95862 0.98137 1.69678 1.51164 1.04647 1.32223 0.86109 0.77213 0.77645 0.85127 1.20482 1.21834 1.21797 1.23572 1.01415 1.01762 0.93005 1.22391 0.94506 0.88428 0.97250 1.48588 1.52228 1.28691 1.04963 1.20002 0.80936 0.85384 0.82247 1.90614 1.39742 1.27547 1.82668 1.22194 0.99026 0.99472 0.89215 1.64680 1.53424 1.03718 1.00863 1.23532 1.00663 0.89458 0.95943 1.22528 1.01441 0.96934 0.95517 1.22398 1.00765 0.95243 0.98525 1.22932 0.96623 0.97672 0.92175 0.93169 0.91228 0.91961 0.78001 0.93411 0.90536 0.90729 0.91610 0.91566 0.92028 0.87983 0.86824 0.94492 0.91246 0.90754 0.91645 0.91068 0.93810 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.10 37.16 0.34 -2.27 16 2 C 0.13 2.25 3.21 -66.95 -0.21 2.03 16 3 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 4 C 0.18 3.34 3.14 -66.10 -0.21 3.13 16 5 H 0.07 1.28 7.80 -51.93 -0.40 0.88 16 6 N -0.71 -17.20 5.22 -51.66 -0.27 -17.47 16 7 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 11 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 15 C -0.16 -2.49 6.77 -24.58 -0.17 -2.65 16 16 C 0.10 1.24 6.69 -2.53 -0.02 1.22 16 17 N -0.61 -9.29 3.06 -163.02 -0.50 -9.79 16 18 C 0.53 8.08 7.35 -10.98 -0.08 8.00 16 19 O -0.53 -9.71 12.55 5.56 0.07 -9.64 16 20 C 0.03 0.38 4.52 -4.98 -0.02 0.36 16 21 N -0.50 -6.13 5.26 -231.89 -1.22 -7.35 16 22 C 0.03 0.39 5.30 -1.90 -0.01 0.38 16 23 C -0.13 -1.23 7.06 -24.87 -0.18 -1.41 16 24 C -0.13 -1.09 6.93 -25.37 -0.18 -1.27 16 25 C 0.03 0.31 6.69 -2.75 -0.02 0.30 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.10 6.88 -51.93 -0.36 0.74 16 29 H 0.39 10.06 7.57 -40.82 -0.31 9.75 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 35 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.11 1.74 5.97 -51.93 -0.31 1.43 16 38 H 0.04 0.47 8.02 -51.93 -0.42 0.06 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.37 7.57 -51.93 -0.39 -0.03 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -30.49 344.48 -9.59 -40.08 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.57 Total: 8.15 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.00 Total: 0.81 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -1.26 Total: -61.39 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.49 -9.59 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987518149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.303 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds