Wall clock time and date at job start Tue Mar 31 2020 05:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99530 * 2 1 4 4 C 1.54334 * 109.77769 * 121.15557 * 2 1 3 5 5 H 1.08999 * 110.51874 * 215.81039 * 4 2 1 6 6 N 1.46505 * 110.85228 * 339.03764 * 4 2 1 7 7 C 1.36934 * 119.99947 * 200.14406 * 6 4 2 8 8 H 1.08002 * 119.99963 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00256 * 179.97438 * 7 6 4 10 10 N 1.31619 * 119.99679 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00375 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46901 * 120.00016 * 11 9 7 14 14 H 1.48499 * 109.47195 * 240.00057 * 11 9 7 15 15 C 1.55162 * 103.01995 * 97.50022 * 4 2 1 16 16 C 1.54916 * 101.57747 * 35.30656 * 15 4 2 17 17 N 1.47016 * 109.88616 * 238.90057 * 2 1 3 18 18 C 1.34775 * 125.64909 * 59.55604 * 17 2 1 19 19 O 1.21281 * 119.99922 * 359.72511 * 18 17 2 20 20 C 1.50703 * 119.99901 * 179.71691 * 18 17 2 21 21 N 1.46906 * 109.46769 * 180.02562 * 20 18 17 22 22 C 1.47897 * 110.99555 * 169.99928 * 21 20 18 23 23 C 1.54000 * 107.05672 * 145.84575 * 22 21 20 24 24 C 1.54598 * 105.22213 * 358.72428 * 23 22 21 25 25 C 1.48533 * 111.00245 * 287.39878 * 21 20 18 26 26 H 1.09003 * 109.47248 * 179.64643 * 1 2 3 27 27 H 1.08997 * 109.47359 * 299.64481 * 1 2 3 28 28 H 1.09003 * 109.46936 * 59.65055 * 1 2 3 29 29 H 0.97001 * 119.99907 * 20.13921 * 6 4 2 30 30 H 0.97003 * 119.99947 * 179.97438 * 10 9 7 31 31 H 1.09001 * 111.00461 * 277.24052 * 15 4 2 32 32 H 1.08994 * 111.00659 * 153.38136 * 15 4 2 33 33 H 1.09005 * 110.36518 * 204.15279 * 16 15 4 34 34 H 1.09001 * 110.36763 * 81.83374 * 16 15 4 35 35 H 1.08995 * 109.47118 * 60.00687 * 20 18 17 36 36 H 1.09001 * 109.47125 * 299.99978 * 20 18 17 37 37 H 1.09000 * 109.91881 * 26.49521 * 22 21 20 38 38 H 1.09002 * 110.08496 * 265.28456 * 22 21 20 39 39 H 1.09002 * 110.31026 * 117.69182 * 23 22 21 40 40 H 1.09000 * 110.30915 * 239.76211 * 23 22 21 41 41 H 1.09003 * 110.72246 * 96.45403 * 24 23 22 42 42 H 1.09003 * 110.72391 * 219.72762 * 24 23 22 43 43 H 1.09003 * 110.66452 * 318.71648 * 25 21 20 44 44 H 1.08995 * 110.66642 * 81.67547 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7514 1.2428 5 1 2.9605 -0.2813 1.6198 6 7 1.0256 -0.8099 2.2864 7 6 1.3836 -1.0484 3.5864 8 1 2.4228 -1.1938 3.8424 9 6 0.4111 -1.1034 4.5753 10 7 -0.8552 -0.9257 4.2634 11 14 0.8994 -1.4294 6.3486 12 1 2.3730 -1.5923 6.4343 13 1 0.4781 -0.2852 7.1964 14 1 0.2353 -2.6693 6.8249 15 6 2.3562 -2.1696 0.6918 16 6 2.8614 -1.8465 -0.7366 17 7 2.0301 -0.7141 -1.1838 18 6 1.7754 -0.3846 -2.4656 19 8 1.0748 0.5726 -2.7180 20 6 2.3615 -1.2056 -3.5853 21 7 1.9392 -0.6454 -4.8760 22 6 2.6797 -1.2711 -5.9929 23 6 1.7126 -1.3484 -7.1889 24 6 0.3792 -0.7618 -6.6713 25 6 0.5037 -0.9262 -5.1342 26 1 -0.3634 -1.0277 -0.0063 27 1 -0.3634 0.5083 0.8931 28 1 -0.3633 0.5193 -0.8869 29 1 0.0923 -0.6797 2.0564 30 1 -1.5350 -0.9645 4.9544 31 1 1.4522 -2.7777 0.6581 32 1 3.1328 -2.6590 1.2795 33 1 2.7179 -2.7049 -1.3930 34 1 3.9124 -1.5588 -0.7112 35 1 2.0111 -2.2345 -3.5033 36 1 3.4493 -1.1859 -3.5194 37 1 3.0012 -2.2735 -5.7100 38 1 3.5460 -0.6635 -6.2547 39 1 2.0906 -0.7531 -8.0202 40 1 1.5753 -2.3846 -7.4981 41 1 0.2906 0.2908 -6.9405 42 1 -0.4674 -1.3315 -7.0545 43 1 0.2510 -1.9436 -4.8357 44 1 -0.1285 -0.2060 -4.6148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987518150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:28 Heat of formation + Delta-G solvation = -4.565259 kcal Electronic energy + Delta-G solvation = -22780.518417 eV Core-core repulsion = 19540.371905 eV Total energy + Delta-G solvation = -3240.146512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14569 -38.79590 -37.15047 -34.16971 -32.58931 -31.51928 -30.67683 -29.05000 -29.01023 -26.48028 -25.19944 -23.43718 -22.53066 -21.38336 -21.03044 -19.58528 -18.56575 -17.52945 -16.94525 -16.17700 -15.95124 -15.58266 -14.94246 -14.76463 -14.42626 -13.84373 -13.79349 -13.44417 -13.23454 -12.80336 -12.56118 -12.48922 -12.28751 -11.96740 -11.80658 -11.69605 -11.52468 -11.40522 -11.26542 -11.14076 -10.98071 -10.83586 -10.77924 -10.45828 -10.19473 -9.96735 -9.72043 -9.41472 -8.96301 -8.54585 -8.33659 -7.02982 -5.82543 -3.12281 2.87052 3.06207 3.40162 3.45902 3.48205 3.90650 4.44114 4.45960 4.54468 4.68345 4.77169 5.01419 5.07644 5.09424 5.16663 5.28603 5.32316 5.39483 5.45158 5.54812 5.57312 5.59122 5.62993 5.65168 5.80540 5.83522 5.97146 6.00561 6.07001 6.11851 6.23690 6.33154 6.55720 6.57988 6.67077 6.70742 6.77184 6.88927 7.00299 7.65964 7.82986 8.35924 8.46615 9.47724 10.03119 10.38086 11.40031 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044187 B = 0.003302 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.515147 B = 8478.214406 C = 8788.225446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 H 0.071 0.929 4 C 0.173 3.827 5 H 0.062 0.938 6 N -0.718 5.718 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.153 4.153 16 C 0.097 3.903 17 N -0.612 5.612 18 C 0.528 3.472 19 O -0.525 6.525 20 C 0.033 3.967 21 N -0.500 5.500 22 C 0.035 3.965 23 C -0.131 4.131 24 C -0.123 4.123 25 C 0.035 3.965 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.391 0.609 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 -3.674 -19.967 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.089 0.911 4 C 0.061 3.939 5 H 0.080 0.920 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.194 4.194 16 C -0.026 4.026 17 N -0.348 5.348 18 C 0.315 3.685 19 O -0.400 6.400 20 C -0.099 4.099 21 N -0.224 5.224 22 C -0.093 4.093 23 C -0.169 4.169 24 C -0.161 4.161 25 C -0.092 4.092 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.047 -2.586 -19.967 21.331 hybrid contribution -0.067 -1.263 1.022 1.627 sum 6.981 -3.849 -18.944 20.553 Atomic orbital electron populations 1.21992 0.94654 1.02289 1.02630 1.21797 0.95334 0.95719 0.84475 0.91141 1.21175 0.93182 0.92023 0.87470 0.91994 1.42681 1.05148 1.85275 1.03021 1.19282 0.93022 1.41084 0.84029 0.91019 1.24760 0.95305 1.02548 0.98158 1.69671 0.99294 1.56419 1.32488 0.86107 0.77507 0.77427 0.85040 1.20519 1.21825 1.21871 1.23541 1.01611 1.01337 0.92946 1.22372 0.94512 0.88446 0.97282 1.48625 1.50453 1.30740 1.04987 1.19978 0.81246 0.85250 0.82005 1.90666 1.37935 1.28473 1.82938 1.22131 1.01604 0.96484 0.89654 1.64485 1.04077 1.53911 0.99921 1.22884 0.97629 0.97715 0.91056 1.22388 0.95629 1.01083 0.97775 1.22504 0.96880 1.01841 0.94901 1.23360 0.89791 0.99990 0.96080 0.92658 0.90319 0.92151 0.77092 0.93429 0.90730 0.90630 0.91650 0.91683 0.91926 0.88186 0.93805 0.90190 0.90973 0.91585 0.90594 0.91093 0.94167 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 7.93 37.16 0.29 -2.72 16 2 C 0.13 2.34 3.49 -66.95 -0.23 2.11 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 4 C 0.17 3.33 3.45 -66.08 -0.23 3.10 16 5 H 0.06 1.19 8.12 -51.93 -0.42 0.76 16 6 N -0.72 -17.34 5.02 -51.64 -0.26 -17.60 16 7 C -0.24 -6.51 9.98 -15.06 -0.15 -6.66 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 10 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 11 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C -0.15 -2.47 6.77 -24.58 -0.17 -2.63 16 16 C 0.10 1.25 6.69 -2.53 -0.02 1.23 16 17 N -0.61 -9.46 3.08 -163.01 -0.50 -9.96 16 18 C 0.53 8.26 7.46 -10.98 -0.08 8.17 16 19 O -0.52 -10.00 13.95 5.56 0.08 -9.92 16 20 C 0.03 0.39 4.20 -4.97 -0.02 0.36 16 21 N -0.50 -6.04 4.91 -231.78 -1.14 -7.18 16 22 C 0.04 0.31 6.66 -2.75 -0.02 0.30 16 23 C -0.13 -1.02 6.92 -25.37 -0.18 -1.19 16 24 C -0.12 -1.12 7.08 -24.79 -0.18 -1.29 16 25 C 0.04 0.41 5.94 -1.81 -0.01 0.40 16 26 H 0.05 1.08 8.05 -51.93 -0.42 0.66 16 27 H 0.08 1.63 6.73 -51.93 -0.35 1.28 16 28 H 0.06 1.16 6.74 -51.93 -0.35 0.81 16 29 H 0.39 10.02 4.94 -40.82 -0.20 9.82 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.66 7.54 -51.93 -0.39 0.26 16 36 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.04 0.35 7.77 -51.93 -0.40 -0.06 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.04 0.45 7.81 -51.93 -0.41 0.04 16 44 H 0.10 1.35 7.10 -51.93 -0.37 0.98 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -31.22 342.75 -9.50 -40.73 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.47 Total: 7.97 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.08 Total: 0.76 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -1.17 Total: -61.58 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.22 -9.50 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987518150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.161 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds