Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.87276 * 2 1 4 4 C 1.54316 * 110.01256 * 238.90366 * 2 1 3 5 5 H 1.09004 * 110.72209 * 144.33936 * 4 2 1 6 6 N 1.46498 * 110.72283 * 21.06481 * 4 2 1 7 7 C 1.36937 * 120.00201 * 155.00247 * 6 4 2 8 8 H 1.08003 * 120.00023 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00058 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00065 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99895 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47380 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46834 * 120.00427 * 11 9 7 14 14 H 1.48498 * 109.46827 * 240.00099 * 11 9 7 15 15 C 1.55162 * 102.94002 * 262.70329 * 4 2 1 16 16 C 1.55129 * 101.48331 * 324.32974 * 15 4 2 17 17 N 1.47021 * 109.88080 * 121.01140 * 2 1 3 18 18 C 1.34775 * 125.65155 * 300.60109 * 17 2 1 19 19 O 1.21276 * 119.99950 * 359.97438 * 18 17 2 20 20 C 1.50695 * 119.99755 * 180.02562 * 18 17 2 21 21 N 1.46904 * 109.46864 * 179.97438 * 20 18 17 22 22 C 1.48566 * 110.99843 * 169.99938 * 21 20 18 23 23 C 1.54380 * 104.59262 * 200.95774 * 22 21 20 24 24 C 1.54264 * 105.06204 * 23.85280 * 23 22 21 25 25 C 1.48556 * 111.00162 * 54.57693 * 21 20 18 26 26 H 1.09000 * 109.47311 * 300.44167 * 1 2 3 27 27 H 1.09002 * 109.47013 * 60.43778 * 1 2 3 28 28 H 1.08997 * 109.46762 * 180.43637 * 1 2 3 29 29 H 0.97006 * 119.99862 * 334.99932 * 6 4 2 30 30 H 0.97004 * 120.00289 * 179.97438 * 10 9 7 31 31 H 1.08997 * 111.00425 * 82.57674 * 15 4 2 32 32 H 1.09004 * 111.00140 * 206.38865 * 15 4 2 33 33 H 1.08999 * 110.49744 * 278.45528 * 16 15 4 34 34 H 1.09004 * 110.33812 * 156.06202 * 16 15 4 35 35 H 1.09001 * 109.47736 * 59.99408 * 20 18 17 36 36 H 1.08998 * 109.47027 * 299.99144 * 20 18 17 37 37 H 1.08999 * 110.41049 * 319.73313 * 22 21 20 38 38 H 1.08999 * 110.41330 * 82.18261 * 22 21 20 39 39 H 1.09005 * 110.32530 * 142.74561 * 23 22 21 40 40 H 1.08995 * 110.32857 * 264.95872 * 23 22 21 41 41 H 1.08995 * 110.32483 * 241.10627 * 24 23 22 42 42 H 1.09000 * 110.32872 * 118.89474 * 24 23 22 43 43 H 1.08997 * 110.41166 * 277.81957 * 25 21 20 44 44 H 1.09000 * 110.40826 * 40.26311 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7489 -1.2416 5 1 2.9685 -0.2807 -1.6162 6 7 1.0341 -0.8047 -2.2878 7 6 1.4022 -0.9407 -3.5997 8 1 2.4476 -1.0064 -3.8632 9 6 0.4319 -0.9942 -4.5909 10 7 -0.8420 -0.9137 -4.2698 11 14 0.9341 -1.1790 -6.3806 12 1 2.4146 -1.2463 -6.4749 13 1 0.3462 -2.4255 -6.9335 14 1 0.4408 -0.0126 -7.1561 15 6 2.3575 -2.1680 -0.6902 16 6 2.8644 -1.8432 0.7395 17 7 2.0300 -0.7123 1.1850 18 6 1.7729 -0.3827 2.4662 19 8 1.0743 0.5764 2.7171 20 6 2.3544 -1.2052 3.5870 21 7 1.9302 -0.6445 4.8769 22 6 2.2800 -1.5578 5.9953 23 6 1.3405 -1.1401 7.1469 24 6 0.1370 -0.4647 6.4576 25 6 0.4506 -0.5311 4.9474 26 1 -0.3634 0.5207 0.8860 27 1 -0.3633 0.5070 -0.8939 28 1 -0.3633 -1.0276 0.0078 29 1 0.0953 -0.7454 -2.0511 30 1 -1.5201 -0.9506 -4.9625 31 1 1.4522 -2.7741 -0.6592 32 1 3.1341 -2.6591 -1.2766 33 1 3.9148 -1.5532 0.7154 34 1 2.7219 -2.7015 1.3961 35 1 3.4424 -1.1879 3.5239 36 1 2.0020 -2.2333 3.5039 37 1 2.0961 -2.5940 5.7116 38 1 3.3216 -1.4213 6.2860 39 1 1.0135 -2.0170 7.7058 40 1 1.8429 -0.4343 7.8083 41 1 0.0488 0.5725 6.7806 42 1 -0.7807 -1.0101 6.6780 43 1 0.1149 0.3783 4.4490 44 1 -0.0195 -1.4067 4.4997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987518151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -2.881112 kcal Electronic energy + Delta-G solvation = -22852.735754 eV Core-core repulsion = 19612.662272 eV Total energy + Delta-G solvation = -3240.073482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24987 -38.76808 -37.14070 -34.20332 -32.59166 -31.53581 -30.68596 -29.07108 -28.91210 -26.47041 -25.21269 -23.45229 -22.55352 -21.38910 -20.98547 -19.57091 -18.57288 -17.54145 -16.81425 -16.35581 -15.97206 -15.57535 -14.99147 -14.77548 -14.43261 -13.86457 -13.73893 -13.44965 -13.19954 -12.75125 -12.50401 -12.41693 -12.37147 -12.01573 -11.81233 -11.72102 -11.56489 -11.41450 -11.29950 -11.02604 -10.98308 -10.83470 -10.65383 -10.47209 -10.20195 -9.99655 -9.72918 -9.35831 -8.97720 -8.60393 -8.36443 -7.04813 -5.83894 -3.13743 2.80588 3.05021 3.39454 3.45289 3.47533 3.92490 4.47122 4.49253 4.53436 4.76204 4.80390 4.99594 5.10216 5.13475 5.20590 5.27677 5.36299 5.39325 5.52458 5.54369 5.57705 5.61426 5.63024 5.68153 5.82005 5.86737 5.99369 6.02987 6.08850 6.18743 6.23420 6.32649 6.54001 6.56106 6.67428 6.71239 6.76007 6.87347 6.97612 7.64672 7.79214 8.34212 8.40492 9.46259 10.01267 10.36225 11.38573 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043754 B = 0.003349 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.784776 B = 8357.483107 C = 8699.076342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.070 0.930 4 C 0.174 3.826 5 H 0.066 0.934 6 N -0.716 5.716 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C -0.154 4.154 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.529 6.529 20 C 0.030 3.970 21 N -0.495 5.495 22 C 0.030 3.970 23 C -0.123 4.123 24 C -0.127 4.127 25 C 0.029 3.971 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.391 0.609 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -3.470 19.489 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.062 3.938 5 H 0.084 0.916 6 N -0.359 5.359 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C -0.195 4.195 16 C -0.027 4.027 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.405 6.405 20 C -0.102 4.102 21 N -0.219 5.219 22 C -0.098 4.098 23 C -0.161 4.161 24 C -0.165 4.165 25 C -0.099 4.099 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.229 0.771 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.654 -2.412 19.542 20.784 hybrid contribution -0.330 -1.163 -1.126 1.652 sum 6.324 -3.575 18.416 19.797 Atomic orbital electron populations 1.21986 0.94620 1.02198 1.02709 1.21869 0.95352 0.95834 0.84484 0.91150 1.21180 0.93249 0.92004 0.87415 0.91617 1.42659 1.04501 1.86978 1.01785 1.19299 0.92586 1.42569 0.83099 0.90986 1.24763 0.95231 1.02610 0.98120 1.69668 0.98922 1.57017 1.32230 0.86104 0.77551 0.77277 0.85140 1.20505 1.21861 1.21806 1.23597 1.01604 1.01377 0.92954 1.22429 0.94501 0.88440 0.97292 1.48615 1.50096 1.30826 1.04971 1.19982 0.81060 0.85280 0.82220 1.90621 1.38435 1.28716 1.82746 1.22180 1.02050 0.96591 0.89341 1.65311 1.12961 1.42813 1.00856 1.23190 1.00340 0.94546 0.91752 1.22277 0.96174 1.00394 0.97304 1.22341 0.97628 1.01353 0.95163 1.23373 0.87368 1.03090 0.96039 0.92193 0.90224 0.92770 0.77138 0.93411 0.90755 0.90594 0.91540 0.91599 0.87931 0.91995 0.93880 0.90047 0.91480 0.91039 0.91007 0.91583 0.87113 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.93 37.16 0.29 -2.68 16 2 C 0.13 2.28 3.47 -66.95 -0.23 2.05 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 4 C 0.17 3.30 3.48 -66.10 -0.23 3.07 16 5 H 0.07 1.25 8.09 -51.93 -0.42 0.82 16 6 N -0.72 -17.19 4.94 -51.65 -0.26 -17.45 16 7 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 11 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C -0.15 -2.45 6.78 -24.46 -0.17 -2.62 16 16 C 0.10 1.23 6.70 -2.41 -0.02 1.21 16 17 N -0.61 -9.31 3.08 -162.88 -0.50 -9.81 16 18 C 0.53 8.11 7.34 -10.99 -0.08 8.03 16 19 O -0.53 -9.75 12.55 5.56 0.07 -9.68 16 20 C 0.03 0.35 4.55 -4.98 -0.02 0.33 16 21 N -0.49 -6.04 5.33 -231.41 -1.23 -7.28 16 22 C 0.03 0.27 6.49 -2.18 -0.01 0.26 16 23 C -0.12 -1.03 7.00 -25.35 -0.18 -1.21 16 24 C -0.13 -1.24 7.00 -25.34 -0.18 -1.41 16 25 C 0.03 0.36 5.31 -2.18 -0.01 0.35 16 26 H 0.06 1.13 6.74 -51.93 -0.35 0.78 16 27 H 0.08 1.65 6.82 -51.93 -0.35 1.29 16 28 H 0.05 1.04 8.01 -51.93 -0.42 0.63 16 29 H 0.39 9.96 5.07 -40.82 -0.21 9.75 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.65 7.59 -51.93 -0.39 0.26 16 37 H 0.04 0.36 7.82 -51.93 -0.41 -0.04 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.11 1.69 6.05 -51.93 -0.31 1.37 16 44 H 0.04 0.46 8.00 -51.93 -0.42 0.04 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -30.64 340.60 -9.61 -40.24 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.44 Total: 8.44 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.08 Total: 0.31 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -1.27 Total: -61.26 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.64 -9.61 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987518151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.362 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds