Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.87276 * 2 1 4 4 C 1.54316 * 110.01256 * 238.90366 * 2 1 3 5 5 H 1.09004 * 110.72209 * 144.33936 * 4 2 1 6 6 N 1.46498 * 110.72283 * 21.06481 * 4 2 1 7 7 C 1.36937 * 120.00201 * 155.00247 * 6 4 2 8 8 H 1.08003 * 120.00023 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00058 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00065 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99895 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47380 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46834 * 120.00427 * 11 9 7 14 14 H 1.48498 * 109.46827 * 240.00099 * 11 9 7 15 15 C 1.55162 * 102.94002 * 262.70329 * 4 2 1 16 16 C 1.55129 * 101.48331 * 324.32974 * 15 4 2 17 17 N 1.47021 * 109.88080 * 121.01140 * 2 1 3 18 18 C 1.34775 * 125.65155 * 300.60109 * 17 2 1 19 19 O 1.21276 * 119.99950 * 359.97438 * 18 17 2 20 20 C 1.50695 * 119.99755 * 180.02562 * 18 17 2 21 21 N 1.46904 * 109.46864 * 179.97438 * 20 18 17 22 22 C 1.48566 * 110.99843 * 169.99938 * 21 20 18 23 23 C 1.54380 * 104.59262 * 200.95774 * 22 21 20 24 24 C 1.54264 * 105.06204 * 23.85280 * 23 22 21 25 25 C 1.48556 * 111.00162 * 54.57693 * 21 20 18 26 26 H 1.09000 * 109.47311 * 300.44167 * 1 2 3 27 27 H 1.09002 * 109.47013 * 60.43778 * 1 2 3 28 28 H 1.08997 * 109.46762 * 180.43637 * 1 2 3 29 29 H 0.97006 * 119.99862 * 334.99932 * 6 4 2 30 30 H 0.97004 * 120.00289 * 179.97438 * 10 9 7 31 31 H 1.08997 * 111.00425 * 82.57674 * 15 4 2 32 32 H 1.09004 * 111.00140 * 206.38865 * 15 4 2 33 33 H 1.08999 * 110.49744 * 278.45528 * 16 15 4 34 34 H 1.09004 * 110.33812 * 156.06202 * 16 15 4 35 35 H 1.09001 * 109.47736 * 59.99408 * 20 18 17 36 36 H 1.08998 * 109.47027 * 299.99144 * 20 18 17 37 37 H 1.08999 * 110.41049 * 319.73313 * 22 21 20 38 38 H 1.08999 * 110.41330 * 82.18261 * 22 21 20 39 39 H 1.09005 * 110.32530 * 142.74561 * 23 22 21 40 40 H 1.08995 * 110.32857 * 264.95872 * 23 22 21 41 41 H 1.08995 * 110.32483 * 241.10627 * 24 23 22 42 42 H 1.09000 * 110.32872 * 118.89474 * 24 23 22 43 43 H 1.08997 * 110.41166 * 277.81957 * 25 21 20 44 44 H 1.09000 * 110.40826 * 40.26311 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7489 -1.2416 5 1 2.9685 -0.2807 -1.6162 6 7 1.0341 -0.8047 -2.2878 7 6 1.4022 -0.9407 -3.5997 8 1 2.4476 -1.0064 -3.8632 9 6 0.4319 -0.9942 -4.5909 10 7 -0.8420 -0.9137 -4.2698 11 14 0.9341 -1.1790 -6.3806 12 1 2.4146 -1.2463 -6.4749 13 1 0.3462 -2.4255 -6.9335 14 1 0.4408 -0.0126 -7.1561 15 6 2.3575 -2.1680 -0.6902 16 6 2.8644 -1.8432 0.7395 17 7 2.0300 -0.7123 1.1850 18 6 1.7729 -0.3827 2.4662 19 8 1.0743 0.5764 2.7171 20 6 2.3544 -1.2052 3.5870 21 7 1.9302 -0.6445 4.8769 22 6 2.2800 -1.5578 5.9953 23 6 1.3405 -1.1401 7.1469 24 6 0.1370 -0.4647 6.4576 25 6 0.4506 -0.5311 4.9474 26 1 -0.3634 0.5207 0.8860 27 1 -0.3633 0.5070 -0.8939 28 1 -0.3633 -1.0276 0.0078 29 1 0.0953 -0.7454 -2.0511 30 1 -1.5201 -0.9506 -4.9625 31 1 1.4522 -2.7741 -0.6592 32 1 3.1341 -2.6591 -1.2766 33 1 3.9148 -1.5532 0.7154 34 1 2.7219 -2.7015 1.3961 35 1 3.4424 -1.1879 3.5239 36 1 2.0020 -2.2333 3.5039 37 1 2.0961 -2.5940 5.7116 38 1 3.3216 -1.4213 6.2860 39 1 1.0135 -2.0170 7.7058 40 1 1.8429 -0.4343 7.8083 41 1 0.0488 0.5725 6.7806 42 1 -0.7807 -1.0101 6.6780 43 1 0.1149 0.3783 4.4490 44 1 -0.0195 -1.4067 4.4997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987518151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -23.922240 kcal Electronic energy + Delta-G solvation = -22853.648166 eV Core-core repulsion = 19612.662272 eV Total energy + Delta-G solvation = -3240.985894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44766 -39.81390 -38.38253 -35.92714 -33.77600 -33.01980 -32.06407 -30.70506 -29.69468 -27.52277 -26.78549 -25.27762 -23.78447 -22.32765 -21.70947 -20.93173 -19.87361 -19.45565 -18.02312 -17.29365 -17.09732 -16.77297 -16.33260 -16.12599 -15.81656 -15.50037 -14.93621 -14.67716 -14.44989 -14.09578 -13.81419 -13.60857 -13.34975 -13.17705 -13.12408 -12.99780 -12.90020 -12.88083 -12.57139 -12.51970 -12.13842 -12.08657 -12.01387 -11.91990 -11.60981 -11.53406 -11.36918 -10.93312 -10.58770 -9.65273 -9.45346 -9.01711 -7.94189 -5.23269 1.49190 1.49910 1.59694 1.63509 1.87980 2.57420 3.06581 3.35157 3.46696 3.73915 3.77222 3.84944 3.91447 4.03216 4.09777 4.19276 4.27565 4.35386 4.38110 4.39209 4.43913 4.55989 4.64986 4.68242 4.75228 4.78156 4.86344 4.91401 5.02158 5.05055 5.14773 5.19881 5.24077 5.25860 5.27691 5.35714 5.50454 5.54997 5.84829 5.95242 6.27521 6.61046 7.21035 7.34683 8.08260 8.31728 9.29690 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043754 B = 0.003349 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.784776 B = 8357.483107 C = 8699.076342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.135 3.865 3 H 0.060 0.940 4 C 0.165 3.835 5 H 0.070 0.930 6 N -0.732 5.732 7 C -0.237 4.237 8 H 0.082 0.918 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.296 1.296 14 H -0.298 1.298 15 C -0.145 4.145 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.519 3.481 19 O -0.567 6.567 20 C 0.038 3.962 21 N -0.515 5.515 22 C 0.030 3.970 23 C -0.120 4.120 24 C -0.125 4.125 25 C 0.029 3.971 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.380 0.620 30 H 0.250 0.750 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.321 -5.155 21.118 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.078 0.922 4 C 0.055 3.945 5 H 0.088 0.912 6 N -0.374 5.374 7 C -0.369 4.369 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.186 1.186 13 H -0.223 1.223 14 H -0.226 1.226 15 C -0.186 4.186 16 C -0.018 4.018 17 N -0.345 5.345 18 C 0.309 3.691 19 O -0.446 6.446 20 C -0.093 4.093 21 N -0.240 5.240 22 C -0.097 4.097 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.099 4.099 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.215 0.785 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.329 -4.121 21.212 23.537 hybrid contribution -1.113 -0.592 -1.553 2.001 sum 8.215 -4.714 19.659 21.822 Atomic orbital electron populations 1.21785 0.95926 1.01125 1.01102 1.21572 0.94147 0.95682 0.85596 0.92174 1.21395 0.92041 0.94356 0.86692 0.91237 1.42837 1.05049 1.87294 1.02238 1.19709 0.92894 1.40044 0.84254 0.89990 1.25562 0.95317 1.03871 1.02125 1.69830 0.99937 1.59450 1.32993 0.85074 0.77986 0.76405 0.80285 1.18639 1.22299 1.22552 1.23399 1.01373 0.98505 0.95302 1.22587 0.95195 0.88597 0.95376 1.48655 1.50321 1.31236 1.04303 1.20795 0.80384 0.85156 0.82747 1.90626 1.40070 1.30601 1.83289 1.22207 1.03168 0.96367 0.87550 1.65291 1.12346 1.44526 1.01874 1.23290 1.01242 0.94529 0.90653 1.22301 0.95181 1.01115 0.97160 1.22331 0.99052 1.01559 0.93398 1.23217 0.88097 1.01009 0.97533 0.92689 0.92714 0.93515 0.78465 0.94123 0.92655 0.89252 0.88641 0.88255 0.85348 0.90003 0.92652 0.88635 0.89560 0.90559 0.91579 0.90487 0.90706 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 7.93 71.98 0.57 -5.01 16 2 C 0.13 4.81 3.47 45.34 0.16 4.97 16 3 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 4 C 0.17 6.18 3.48 46.18 0.16 6.34 16 5 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 6 N -0.73 -35.66 4.94 -317.33 -1.57 -37.23 16 7 C -0.24 -12.66 9.96 84.03 0.84 -11.82 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 10 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 11 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 13 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 15 C -0.15 -4.31 6.78 32.07 0.22 -4.09 16 16 C 0.10 2.26 6.70 86.93 0.58 2.84 16 17 N -0.61 -17.59 3.08 -787.63 -2.43 -20.01 16 18 C 0.52 15.30 7.34 87.66 0.64 15.95 16 19 O -0.57 -21.23 12.55 -3.02 -0.04 -21.26 16 20 C 0.04 0.77 4.55 85.55 0.39 1.16 16 21 N -0.52 -11.49 5.33 -886.03 -4.73 -16.21 16 22 C 0.03 0.45 6.49 86.45 0.56 1.01 16 23 C -0.12 -1.65 7.00 31.49 0.22 -1.43 16 24 C -0.13 -2.28 7.00 31.49 0.22 -2.06 16 25 C 0.03 0.72 5.31 86.45 0.46 1.18 16 26 H 0.05 2.19 6.74 -2.39 -0.02 2.17 16 27 H 0.05 2.41 6.82 -2.39 -0.02 2.40 16 28 H 0.05 1.87 8.01 -2.39 -0.02 1.85 16 29 H 0.38 20.08 5.07 -92.70 -0.47 19.61 16 30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.58 7.48 -2.38 -0.02 1.56 16 35 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.37 7.59 -2.39 -0.02 1.36 16 37 H 0.06 0.70 7.82 -2.39 -0.02 0.69 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 2.38 6.05 -2.39 -0.01 2.37 16 44 H 0.03 0.75 8.00 -2.39 -0.02 0.73 16 Total: -1.00 -68.73 340.60 -0.46 -69.19 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.50 Total: 31.75 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.49 Total: 5.18 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -8.44 Total: -132.17 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.04 Total: -21.26 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.73 -0.46 -69.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987518151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.267 kcal (2) G-P(sol) polarization free energy of solvation -68.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds