Wall clock time and date at job start Tue Mar 31 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.32265 * 2 1 4 4 C 1.54899 * 110.46031 * 237.69562 * 2 1 3 5 5 C 1.55154 * 101.58344 * 204.10513 * 4 2 1 6 6 H 1.09001 * 110.72287 * 276.96241 * 5 4 2 7 7 N 1.46492 * 110.72304 * 153.86565 * 5 4 2 8 8 C 1.36941 * 120.00069 * 154.99784 * 7 5 4 9 9 H 1.07994 * 120.00210 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99872 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00042 * 180.02562 * 10 8 7 12 12 Si 1.86806 * 120.00380 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47062 * 89.99537 * 12 10 8 14 14 H 1.48495 * 109.47334 * 210.00011 * 12 10 8 15 15 H 1.48503 * 109.46622 * 329.99877 * 12 10 8 16 16 C 1.54338 * 103.02023 * 35.30788 * 5 4 2 17 17 N 1.47029 * 107.26349 * 338.14226 * 16 5 4 18 18 C 1.34768 * 125.64499 * 178.85156 * 17 16 5 19 19 O 1.21286 * 119.99947 * 179.69136 * 18 17 16 20 20 C 1.50698 * 120.00456 * 359.68766 * 18 17 16 21 21 N 1.46904 * 109.47326 * 180.02562 * 20 18 17 22 22 C 1.47845 * 110.99935 * 69.15936 * 21 20 18 23 23 C 1.54908 * 104.79717 * 146.36210 * 22 21 20 24 24 C 1.55147 * 101.65049 * 322.93105 * 23 22 21 25 25 C 1.47439 * 110.99753 * 189.99937 * 21 20 18 26 26 H 1.08995 * 109.47307 * 299.22095 * 1 2 3 27 27 H 1.08999 * 109.47413 * 59.22235 * 1 2 3 28 28 H 1.08998 * 109.47118 * 179.21893 * 1 2 3 29 29 H 1.09001 * 111.00782 * 322.18349 * 4 2 1 30 30 H 1.09005 * 111.00717 * 86.02979 * 4 2 1 31 31 H 0.96999 * 120.00148 * 335.00333 * 7 5 4 32 32 H 0.97000 * 120.00534 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.99231 * 218.66913 * 16 5 4 34 34 H 1.08995 * 109.77810 * 97.49589 * 16 5 4 35 35 H 1.09000 * 109.46871 * 60.00033 * 20 18 17 36 36 H 1.09002 * 109.47086 * 300.00404 * 20 18 17 37 37 H 1.09005 * 110.37246 * 27.53168 * 22 21 20 38 38 H 1.08998 * 110.37354 * 265.19404 * 22 21 20 39 39 H 1.08996 * 110.99351 * 204.83721 * 23 22 21 40 40 H 1.09002 * 110.98650 * 81.01419 * 23 22 21 41 41 H 1.09000 * 110.70281 * 154.03642 * 24 23 22 42 42 H 1.09000 * 110.70143 * 277.26807 * 24 23 22 43 43 H 1.09003 * 109.88723 * 117.34017 * 25 21 20 44 44 H 1.08999 * 109.89041 * 356.15407 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7756 -1.2266 5 6 3.4803 -1.1971 -0.7317 6 1 4.1966 -0.3876 -0.8722 7 7 3.9300 -2.4098 -1.4195 8 6 5.2687 -2.6712 -1.5416 9 1 5.9929 -1.9836 -1.1305 10 6 5.6948 -3.8206 -2.1929 11 7 6.9814 -4.0721 -2.3099 12 14 4.4422 -5.0104 -2.9035 13 1 4.1362 -4.6282 -4.3054 14 1 4.9964 -6.3878 -2.8756 15 1 3.1980 -4.9610 -2.0942 16 6 3.2540 -1.4695 0.7705 17 7 2.0430 -0.7371 1.1692 18 6 1.4960 -0.7353 2.4009 19 8 0.4943 -0.0872 2.6186 20 6 2.1290 -1.5386 3.5077 21 7 1.3493 -1.3716 4.7415 22 6 0.0305 -2.0301 4.6280 23 6 -0.2797 -2.5434 6.0562 24 6 1.1252 -2.9885 6.5412 25 6 2.0619 -1.9443 5.8983 26 1 -0.3634 0.5017 0.8968 27 1 -0.3634 0.5258 -0.8829 28 1 -0.3633 -1.0276 -0.0140 29 1 1.4550 -1.6487 -1.4402 30 1 2.1421 -0.1264 -2.0994 31 1 3.2796 -3.0276 -1.7886 32 1 7.2792 -4.8755 -2.7647 33 1 4.1084 -1.1144 1.3465 34 1 3.1119 -2.5377 0.9343 35 1 3.1487 -1.1903 3.6719 36 1 2.1454 -2.5921 3.2284 37 1 0.0817 -2.8640 3.9278 38 1 -0.7258 -1.3125 4.3100 39 1 -0.9683 -3.3877 6.0268 40 1 -0.6730 -1.7423 6.6821 41 1 1.1889 -2.9460 7.6285 42 1 1.3583 -3.9899 6.1793 43 1 2.2912 -1.1588 6.6184 44 1 2.9816 -2.4257 5.5661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989801074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:06 Heat of formation + Delta-G solvation = -7.198965 kcal Electronic energy + Delta-G solvation = -22854.280445 eV Core-core repulsion = 19614.019727 eV Total energy + Delta-G solvation = -3240.260718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19908 -38.79618 -37.14770 -34.32864 -32.66883 -31.62477 -31.30106 -29.03374 -28.94784 -26.60636 -25.41612 -23.65182 -21.90393 -21.29253 -20.79681 -20.42519 -18.71865 -17.76392 -16.85574 -16.47091 -15.95839 -15.55370 -14.97194 -14.77655 -14.31792 -13.87929 -13.63965 -13.40955 -13.37026 -13.17930 -12.70752 -12.61578 -12.29693 -12.10098 -12.03686 -11.91102 -11.56389 -11.52685 -11.37123 -11.22434 -11.17271 -10.89599 -10.85385 -10.71199 -10.42884 -10.13802 -9.70538 -9.37434 -9.06391 -8.40303 -8.33700 -7.45590 -5.89545 -3.27777 2.84968 3.06032 3.28616 3.31796 3.37732 3.93981 4.45017 4.47632 4.52083 4.64727 4.80062 4.99307 5.04336 5.11609 5.16194 5.20832 5.30579 5.36275 5.37502 5.48029 5.50264 5.56768 5.60356 5.69332 5.71469 5.76157 5.79093 5.90811 5.98175 6.02773 6.06350 6.09392 6.30534 6.35396 6.40385 6.60655 6.72163 6.84347 6.87597 7.78593 7.85715 8.29148 8.44053 9.05625 9.77904 9.96013 11.28055 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017495 B = 0.004385 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.081924 B = 6384.456376 C = 7272.770821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 H 0.073 0.927 4 C -0.141 4.141 5 C 0.178 3.822 6 H 0.077 0.923 7 N -0.737 5.737 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.929 5.929 12 Si 0.883 3.117 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.277 1.277 16 C 0.073 3.927 17 N -0.614 5.614 18 C 0.531 3.469 19 O -0.531 6.531 20 C 0.035 3.965 21 N -0.513 5.513 22 C 0.047 3.953 23 C -0.130 4.130 24 C -0.143 4.143 25 C 0.041 3.959 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.364 0.636 32 H 0.261 0.739 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 4.360 12.860 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.091 0.909 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.095 0.905 7 N -0.378 5.378 8 C -0.384 4.384 9 H 0.111 0.889 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.204 1.204 16 C -0.053 4.053 17 N -0.349 5.349 18 C 0.319 3.681 19 O -0.408 6.408 20 C -0.096 4.096 21 N -0.237 5.237 22 C -0.081 4.081 23 C -0.169 4.169 24 C -0.181 4.181 25 C -0.087 4.087 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.197 0.803 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.127 5.222 13.102 19.268 hybrid contribution -0.380 -2.005 -0.730 2.168 sum -13.507 3.217 12.371 18.597 Atomic orbital electron populations 1.22155 0.94339 1.02285 1.03191 1.21819 0.94742 0.95400 0.84517 0.90875 1.23208 0.97680 1.00357 0.96750 1.21134 0.93393 0.90516 0.88360 0.90492 1.42735 1.05100 1.23093 1.66917 1.19090 0.81755 1.05962 1.31617 0.88929 1.24676 0.95565 0.98011 1.00334 1.69696 1.12526 1.27820 1.47491 0.86586 0.81176 0.81435 0.79500 1.20871 1.21620 1.20354 1.23222 0.85473 0.96499 1.00100 1.48641 1.28591 1.48824 1.08879 1.20049 0.84193 0.82016 0.81890 1.90590 1.25183 1.43505 1.81552 1.22196 0.98539 0.98992 0.89921 1.63304 1.02857 1.55771 1.01776 1.23094 0.91812 0.97082 0.96071 1.22735 0.96733 1.00806 0.96586 1.22788 0.95468 0.98882 1.01008 1.22865 0.96378 0.96478 0.92992 0.89661 0.92431 0.93066 0.90889 0.89894 0.80269 0.92863 0.91811 0.91230 0.87980 0.91849 0.94073 0.89093 0.90980 0.90629 0.90706 0.91491 0.90216 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.71 37.16 0.32 -1.86 16 2 C 0.14 1.95 3.76 -66.42 -0.25 1.70 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.05 6.14 -24.59 -0.15 -2.21 16 5 C 0.18 3.10 3.60 -66.09 -0.24 2.86 16 6 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 7 N -0.74 -16.06 4.96 -51.65 -0.26 -16.32 16 8 C -0.25 -6.71 10.44 -15.06 -0.16 -6.87 16 9 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.97 13.97 55.49 0.78 -27.19 16 12 Si 0.88 21.09 27.74 -169.99 -4.71 16.38 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 16 C 0.07 1.16 6.25 -3.05 -0.02 1.14 16 17 N -0.61 -9.25 3.24 -163.05 -0.53 -9.78 16 18 C 0.53 8.19 7.43 -10.99 -0.08 8.10 16 19 O -0.53 -9.29 12.69 5.55 0.07 -9.22 16 20 C 0.03 0.45 4.25 -4.97 -0.02 0.43 16 21 N -0.51 -6.52 4.86 -232.69 -1.13 -7.65 16 22 C 0.05 0.56 5.74 -2.30 -0.01 0.55 16 23 C -0.13 -1.21 7.08 -24.59 -0.17 -1.38 16 24 C -0.14 -1.23 6.94 -24.91 -0.17 -1.41 16 25 C 0.04 0.41 6.87 -2.84 -0.02 0.39 16 26 H 0.08 1.30 5.89 -51.93 -0.31 0.99 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.36 7.89 5.62 -40.82 -0.23 7.66 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 35 H 0.10 1.23 8.03 -51.93 -0.42 0.82 16 36 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 37 H 0.04 0.51 7.62 -51.93 -0.40 0.11 16 38 H 0.09 1.24 7.38 -51.93 -0.38 0.86 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.55 7.55 -51.93 -0.39 0.15 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -30.44 342.67 -9.29 -39.72 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.60 Total: 7.24 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.07 Total: 1.66 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -1.14 Total: -60.94 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.44 -9.29 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989801074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.526 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds