Wall clock time and date at job start Tue Mar 31 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.40993 * 2 1 4 4 C 1.55126 * 110.34156 * 122.44334 * 2 1 3 5 5 C 1.55161 * 101.48402 * 156.06169 * 4 2 1 6 6 H 1.08998 * 110.72083 * 82.69376 * 5 4 2 7 7 N 1.46499 * 110.71790 * 205.97168 * 5 4 2 8 8 C 1.36940 * 119.99446 * 199.97340 * 7 5 4 9 9 H 1.07995 * 120.00256 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99821 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00411 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99839 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.47320 * 89.99987 * 12 10 8 14 14 H 1.48503 * 109.47142 * 209.99951 * 12 10 8 15 15 H 1.48503 * 109.47272 * 330.00058 * 12 10 8 16 16 C 1.54330 * 102.94025 * 324.33186 * 5 4 2 17 17 N 1.47022 * 107.27052 * 22.19649 * 16 5 4 18 18 C 1.34773 * 125.64782 * 181.02242 * 17 16 5 19 19 O 1.21276 * 120.00151 * 180.02562 * 18 17 16 20 20 C 1.50706 * 119.99959 * 0.02562 * 18 17 16 21 21 N 1.46905 * 109.47059 * 180.02562 * 20 18 17 22 22 C 1.48560 * 110.99577 * 189.99748 * 21 20 18 23 23 C 1.54378 * 104.69549 * 200.89794 * 22 21 20 24 24 C 1.54571 * 104.91190 * 23.88545 * 23 22 21 25 25 C 1.48555 * 110.99889 * 74.58229 * 21 20 18 26 26 H 1.08998 * 109.46833 * 180.83731 * 1 2 3 27 27 H 1.08996 * 109.47447 * 300.84087 * 1 2 3 28 28 H 1.09003 * 109.46791 * 60.83818 * 1 2 3 29 29 H 1.08994 * 111.19014 * 37.95865 * 4 2 1 30 30 H 1.08993 * 110.94081 * 274.05310 * 4 2 1 31 31 H 0.96998 * 120.00412 * 19.97340 * 7 5 4 32 32 H 0.96997 * 120.00237 * 180.02562 * 11 10 8 33 33 H 1.08995 * 109.88414 * 262.77560 * 16 5 4 34 34 H 1.08998 * 110.00767 * 141.68473 * 16 5 4 35 35 H 1.08998 * 109.47305 * 60.00018 * 20 18 17 36 36 H 1.08997 * 109.46731 * 300.00115 * 20 18 17 37 37 H 1.09002 * 110.41441 * 319.73871 * 22 21 20 38 38 H 1.09002 * 110.41248 * 82.06172 * 22 21 20 39 39 H 1.09006 * 110.32557 * 142.80924 * 23 22 21 40 40 H 1.08996 * 110.32821 * 265.02105 * 23 22 21 41 41 H 1.08995 * 110.29758 * 241.08109 * 24 23 22 42 42 H 1.09004 * 110.40408 * 118.93657 * 24 23 22 43 43 H 1.09005 * 110.41154 * 277.81401 * 25 21 20 44 44 H 1.08998 * 110.41848 * 40.13562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7803 1.2275 5 6 3.4797 -1.1972 0.7333 6 1 4.1930 -0.3849 0.8728 7 7 3.9320 -2.4098 1.4198 8 6 5.2653 -2.7205 1.4534 9 1 5.9833 -2.0716 0.9742 10 6 5.6940 -3.8692 2.1043 11 7 6.9754 -4.1677 2.1371 12 14 4.4521 -4.9913 2.9338 13 1 3.9843 -6.0144 1.9644 14 1 5.0900 -5.6639 4.0940 15 1 3.2945 -4.1878 3.4026 16 6 3.2525 -1.4724 -0.7682 17 7 2.0431 -0.7383 -1.1683 18 6 1.4972 -0.7361 -2.4006 19 8 0.4938 -0.0907 -2.6182 20 6 2.1337 -1.5358 -3.5081 21 7 1.3554 -1.3683 -4.7427 22 6 1.8058 -2.3215 -5.7894 23 6 1.3240 -1.7005 -7.1181 24 6 1.1826 -0.1898 -6.8229 25 6 1.5904 -0.0297 -5.3426 26 1 -0.3633 -1.0276 0.0150 27 1 -0.3634 0.5268 0.8823 28 1 -0.3633 0.5008 -0.8974 29 1 1.4549 -1.6554 1.4390 30 1 2.1372 -0.1327 2.1016 31 1 3.2872 -2.9924 1.8505 32 1 7.2749 -4.9706 2.5917 33 1 3.1090 -2.5404 -0.9318 34 1 4.1076 -1.1207 -1.3454 35 1 2.1530 -2.5897 -3.2305 36 1 3.1525 -1.1842 -3.6707 37 1 2.8923 -2.4085 -5.7822 38 1 1.3461 -3.2980 -5.6374 39 1 2.0616 -1.8671 -7.9033 40 1 0.3613 -2.1225 -7.4062 41 1 0.1503 0.1287 -6.9678 42 1 1.8496 0.3868 -7.4639 43 1 0.9667 0.7200 -4.8555 44 1 2.6427 0.2430 -5.2636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989801075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:09 Heat of formation + Delta-G solvation = -7.014439 kcal Electronic energy + Delta-G solvation = -22771.574867 eV Core-core repulsion = 19531.322151 eV Total energy + Delta-G solvation = -3240.252716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16289 -38.74329 -37.15086 -34.32049 -32.72998 -31.62443 -31.31786 -28.98122 -28.92503 -26.61370 -25.40184 -23.66003 -21.98121 -21.00929 -20.94769 -20.42640 -18.64118 -17.72972 -16.85104 -16.32594 -16.02779 -15.75204 -14.97382 -14.84594 -14.33620 -13.91491 -13.56666 -13.43882 -13.40459 -13.01545 -12.68904 -12.47019 -12.26289 -12.17253 -12.07530 -11.85171 -11.65058 -11.54167 -11.33139 -11.25504 -11.15172 -10.88304 -10.72664 -10.66588 -10.42334 -10.12427 -9.70118 -9.38723 -9.06422 -8.55798 -8.34235 -7.44858 -5.88983 -3.27221 2.85010 3.05759 3.30060 3.33171 3.38935 3.95622 4.47816 4.48575 4.49932 4.70227 4.83073 4.99455 5.05874 5.10206 5.11295 5.21158 5.31797 5.36430 5.39760 5.46749 5.52121 5.56748 5.61046 5.66479 5.72294 5.77088 5.86816 5.91171 5.95698 6.00385 6.01915 6.10259 6.30895 6.35658 6.40773 6.61482 6.70474 6.72707 6.83246 7.78895 7.85994 8.29747 8.44346 9.06355 9.78678 9.96867 11.28604 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.004181 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.844876 B = 6695.263306 C = 7613.836907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.178 3.822 6 H 0.073 0.927 7 N -0.738 5.738 8 C -0.255 4.255 9 H 0.092 0.908 10 C 0.010 3.990 11 N -0.929 5.929 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.074 3.926 17 N -0.614 5.614 18 C 0.532 3.468 19 O -0.531 6.531 20 C 0.028 3.972 21 N -0.492 5.492 22 C 0.029 3.971 23 C -0.123 4.123 24 C -0.124 4.124 25 C 0.033 3.967 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.364 0.636 32 H 0.261 0.739 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 7.184 -13.292 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.066 3.934 6 H 0.091 0.909 7 N -0.380 5.380 8 C -0.384 4.384 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.576 5.576 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.052 4.052 17 N -0.350 5.350 18 C 0.320 3.680 19 O -0.408 6.408 20 C -0.103 4.103 21 N -0.216 5.216 22 C -0.098 4.098 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.095 4.095 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.198 0.802 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.979 7.416 -13.327 19.393 hybrid contribution 0.362 -0.994 0.526 1.182 sum -11.617 6.422 -12.801 18.441 Atomic orbital electron populations 1.22155 0.94245 1.02457 1.03125 1.21863 0.94818 0.95256 0.84509 0.90924 1.23215 0.97520 1.00386 0.96730 1.21125 0.93272 0.90452 0.88524 0.90868 1.42729 1.05876 1.24902 1.64454 1.19070 0.82366 1.06550 1.30424 0.88993 1.24679 0.95629 0.98086 1.00216 1.69695 1.12838 1.27282 1.47744 0.86581 0.81168 0.81353 0.79598 1.20964 1.21590 1.20198 1.23208 0.85375 0.96660 0.99943 1.48648 1.28656 1.48755 1.08907 1.20006 0.84146 0.81832 0.82039 1.90591 1.24803 1.43650 1.81741 1.22136 0.95829 1.01689 0.90672 1.65144 1.50990 1.03506 1.01987 1.23160 0.98457 0.97095 0.91134 1.22319 1.01690 0.95538 0.96531 1.22337 1.02070 0.96176 0.95595 1.23194 0.99472 0.92414 0.94427 0.92889 0.92480 0.89683 0.90729 0.89973 0.80206 0.92870 0.90981 0.92006 0.87885 0.91631 0.93648 0.89938 0.91347 0.90985 0.91005 0.91500 0.89069 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.71 37.16 0.32 -1.89 16 2 C 0.14 1.96 3.77 -66.30 -0.25 1.71 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -2.04 6.12 -24.46 -0.15 -2.19 16 5 C 0.18 3.10 3.59 -66.09 -0.24 2.87 16 6 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 7 N -0.74 -16.10 4.98 -51.65 -0.26 -16.35 16 8 C -0.25 -6.71 10.46 -15.06 -0.16 -6.86 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 12 Si 0.88 21.12 27.74 -169.99 -4.71 16.40 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 16 C 0.07 1.18 6.24 -3.06 -0.02 1.17 16 17 N -0.61 -9.27 3.24 -162.92 -0.53 -9.80 16 18 C 0.53 8.23 7.48 -10.98 -0.08 8.15 16 19 O -0.53 -9.35 12.88 5.56 0.07 -9.28 16 20 C 0.03 0.37 4.51 -4.97 -0.02 0.35 16 21 N -0.49 -6.30 4.98 -231.41 -1.15 -7.45 16 22 C 0.03 0.30 6.45 -2.18 -0.01 0.29 16 23 C -0.12 -1.06 7.02 -25.18 -0.18 -1.24 16 24 C -0.12 -1.15 7.01 -25.18 -0.18 -1.32 16 25 C 0.03 0.38 5.92 -2.19 -0.01 0.37 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.31 5.89 -51.93 -0.31 1.00 16 29 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.36 7.90 5.57 -40.82 -0.23 7.68 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.30 8.08 -51.93 -0.42 0.88 16 36 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 37 H 0.05 0.44 8.00 -51.93 -0.42 0.02 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.23 7.24 -51.93 -0.38 0.85 16 44 H 0.04 0.44 7.75 -51.93 -0.40 0.04 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -30.55 343.45 -9.32 -39.87 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.62 Total: 7.07 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.07 Total: 1.58 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -1.16 Total: -60.81 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.55 -9.32 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989801075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.857 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds